Tuesday, January 28, 2025

Avian #influenza #risk of #upsurge and regional spread through increased #poultry #trade before and during #Lunar New Year #festivities in #Asia

FAO calls for increased vigilance and preparedness for avian influenza (AI) during the traditional New Year festivities that will take place across Asia on the week of 27 January 2025.

In the past year, outbreaks of AI have continued to be reported in domestic poultry, wild birds and mammals in Asia. Several AI virus subtypes including H5N1, H5N2, H5N3, H5N5, H5N6, H5N8, H7N3, H7N6, H7N8, H7N9, H10N5, and H3N2 are currently well-established in both wild and domestic bird populations in the region. In addition, subtype H5N1 subclade 2.3.4.4b continues to circulate in both wild and domestic birds worldwide.

Highly pathogenic avian influenza (HPAI) can lead to heavy losses for the poultry industry, in particular to the livelihoods of vulnerable small-scale producers. Poultry trade and related activities play a key role in AI spread and amplification in domestic bird populations, including the trade of infected live poultry and their products, handling or slaughtering infected poultry, and limited biosecurity along the poultry value chain. Before and during New Year festivities, the risk is further exacerbated by high demand for poultry meat and products, triggering increased and intensified poultry trade and movements as well as visits to live poultry markets.

In addition, a rise in mammalian species infected with HPAI has been recorded globally including outbreaks in farmed mink in Europe, marine mammals in the Americas, cats in the Republic of Korea, and more recently in red foxes and raccoon dogs in Japan, and in captive wild felids in Viet Nam. Notably in 2024, HPAI H5N1 has been found in raw milk of dairy cows – the animals experienced clinical signs including decreased milk production, thickened colostrum-like milk, reduced food intake, lethargy, fever, loose manure and dehydration.

Importantly, AI virus subtypes have demonstrated their zoonotic potential, i.e. the ability to transmit between birds and humans. During 2024, in the Region of Asia and the Pacific, human cases of influenza A(H5N1) were detected in Australia, Cambodia, and Viet Nam. HPAI A(H5N6) was also reported in China. Other subtypes have also been associated with zoonotic transmission in Asia in the past year, including influenza, A(H3N8), and A(H9N2).

Most of these cases reported exposure through close contact with infected live poultry. While human infections with AI viruses remain sporadic events and do not currently spread easily from person to person, they warrant attention since symptoms observed in humans range from asymptomatic to severe and can be fatal.


INCREASED AVIAN INFLUENZA RISK

There is an increased risk of AI spread in Asia due to intensified in-country travel around Lunar New Year (January-February 2025), specifically considering the following:

-- millions of people are expected to travel for the New Year (starting late January 2025);

-- vast majority of traffic will be within countries of the Asian region, but also to and from Asia;

-- poultry trade is increasing to serve the high demand for poultry meat and other products consumed during these festivities;

-- travel and trade increase the risk of spreading AI, since the virus can be transmitted via contact with infected animals as well as contaminated clothing, vehicles and other equipment.


RECOMMENDED ACTIONS

In light of the elevated risk, FAO is calling on all Chief Veterinary Officers (CVOs) in Asia to increase AI prevention and preparedness activities to reduce the likelihood of poultry outbreaks and subsequent impacts on livelihoods, economies, and human infections.

Specifically, FAO recommends countries to:

-- Enhance controls at national borders and along traffic routes based on risk analyses to minimize the risk of introduction of potentially infected live poultry and poultry products.

-- Promote improved biosecurity measures along the value chain, including at farms, live bird markets, slaughter points, etc. to limit further spread of the disease and mitigate the risk of human exposure.

-- Implement measures for early detection, timely reporting and rapid containment of infection, as delays can lead to rapid spread. In addition, the adoption of policies that encourage disease reporting, such as providing adequate compensation following animal culling, can help mitigate these threats.

-- On infected premises (e.g. farms or live bird markets including associated vehicles), conduct appropriate cleaning and disinfection and take action on carcasses, slurry and faecal waste to ensure they do not pose a risk for further transmission and spread of virus. Where possible, use the period immediately following the Lunar New Year festivities for short closures of live bird markets for decontamination after all birds have been sold and processed.

-- Upon detection of outbreaks, timely alert neighbouring countries as well as international organizations, including the World Organisation for Animal Health (WOAH). This includes rapid sharing of virus sequences with relevant partners to ensure appropriate actions are taken by countries in the region (e.g. ensuring the use of adapted vaccines in countries that implement vaccination programmes against AI). The OFFLU Avian Influenza Vaccine Matching (AIM) for poultry vaccines is available for guidance.

-- Implement surveillance schemes that support the detection of HPAI viruses in both domestic and wild birds. Provide mechanisms for reporting sick or dead birds (hotlines, collection points) and raise awareness about the importance of reporting. Farmers, hunters, or rangers should be encouraged to report to veterinary authorities once they see unusual clinical signs in birds including: sudden increase in mortalities; swelling of the head, eyelids, comb, wattles, and hocks; purple discoloration of the wattles, comb, and legs; gasping for air (difficulty breathing); coughing, sneezing, and/or nasal discharge (runny nose); stumbling or falling; or ruffled feathers or neurological disease in water birds.

-- Expand surveillance to relevant mammals, for better early detection of HPAI viruses, and to understand their role in the epidemiology, spread and transmission of avian influenza, including in dairy cattle. FAO Recommendations for the surveillance of influenza A(H5N1) in cattle and A list of mammalian species affected by H5Nx are available for guidance.

-- Ensure laboratories have adequate capacities to diagnose circulating H5Nx HPAI viruses and deploy point-of-need rapid tests as appropriate.

-- Implement targeted sampling of animals with a higher likelihood of detecting the virus. Targeting sick or freshly dead birds as well as sampling their environment will increase the probability of detecting AI viruses.

-- Shift to active surveillance, differential diagnosis, and increased virological screening. Active surveillance in key hotspots of the poultry value chain such as live bird markets allows for early detection of AI virus incursion/amplification.

-- Collaborate closely with forestry/environment sector and wetland, or bird reserve management authorities in contact with wild bird populations to foster information-sharing and joint AI surveillance and prevention activities well ahead of the potential introduction or spread of the virus.

-- Facilitate early reporting and response by consulting closely with the private sector (i.e. producers, traders and related businesses). Preparing and sharing communication materials prior to AI virus introduction will help minimize misunderstandings and rumours.

-- Reinforce awareness campaigns. High level of awareness should be maintained among poultry keepers, the general population, traders, market workers, hunters, and any other relevant stakeholder about AI, precautionary and personal protection measures as well as reporting and collection mechanisms for sick or dead birds.

-- Action against wild birds, particularly indiscriminate hunting or disturbances of habitat, should not be undertaken. Guidance is available to respond to HPAI in wild birds.


WHAT FAO IS DOING

-- Tracking disease rumours in Asia and the Pacific and sharing relevant information with stakeholders in the region on a bi-weekly basis. Please see FAO ECTAD event-based surveillance in Asia and the Pacific bi-weekly update for more information.

-- Conducting consultations with AI experts in Asia and the Pacific to identify innovative approaches to respond to emerging AI threats. Published consultation reports are available at this link.

-- Conducting public health assessments jointly with Tripartite partners (FAO/WHO/WOAH) of recent influenza A(H5) virus events in animals and people.

-- Monitoring and assessing the evolving disease situation. To share updates on your country's situation, please contact FAO at FAO-GLEWS@fao.org.

-- Liaising with FAO/WOAH Reference Laboratories and partner organizations to assess virus characteristics and provide laboratory protocols for detection.

-- Raising awareness about important epidemiological and virological findings and their implications.

-- Providing recommendations for affected countries and those at risk addressing preparedness, prevention and disease control.

-- Providing support for risk assessment and mapping to identify hot spots for risk mitigation and the implementation of risk-based surveillance.

-- Offering support in the provision of diagnostic reagents and personal protective equipment, provided certain conditions are met (contact: EMPRES-Lab-Unit@fao.org).

-- Offering assistance to national authorities for shipment of samples as well as virus sub-typing and sequencing, provided certain conditions are met (contact: EMPRES-Shipping-Service@fao.org).

Source: Food and Agriculture Organization, https://www.fao.org/animal-health/situation-updates/global-aiv-with-zoonotic-potential#alert

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#India - #Influenza A #H5N1 viruses of high pathogenicity (Inf. with) (non-poultry including wild birds) (2017-) - Immediate notification

 Wild Cranes in Rajasthan State.

Source: WOAH, https://wahis.woah.org/#/in-review/6217

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Monday, January 27, 2025

#UK, #Human case of avian #influenza #H5N1 detected in #England

UKHSA has confirmed a case of influenza A(H5N1) in a person in the West Midlands region. Bird-to-human transmission of avian influenza is rare and has previously occurred a small number of times in the UK.


The person acquired the infection on a farm, where they had close and prolonged contact with a large number of infected birds. The risk to the wider public continues to be very low.

The individual is currently well and was admitted to a High Consequence Infectious Disease (HCID) unit.

The birds were infected with the DI.2 genotype, one of the viruses known to be circulating in birds in the UK this season. This is different to strains circulating among mammals and birds in the US.

Although there has been no demonstrated human-to-human transmission despite extensive recent surveillance of influenza A(H5N1), UKHSA has been tracing all individuals who have been in contact with the confirmed case of avian influenza. Those at highest risk of exposure have been offered antiviral treatment. This is done to reduce the chance that any virus they have been exposed to will be able to cause infection.

The case was detected after the Animal and Plant Health Agency (APHA) identified an outbreak of avian influenza(H5N1) in a flock of birds. UKHSA carried out routine monitoring on people who had been in close contact with the infected birds.

Professor Susan Hopkins, Chief Medical Adviser at UKHSA, said:

''The risk of avian flu to the general public remains very low despite this confirmed case. We have robust systems in place to detect cases early and take necessary action, as we know that spillover infections from birds to humans may occur.  

Currently there is no evidence of onwards transmission from this case.

People are reminded not to touch sick or dead birds and it’s important that they follow Defra advice about reporting any suspected avian influenza cases.

UK Chief Veterinary Officer Christine Middlemiss said:

''While avian influenza is highly contagious in birds, this is a very rare event and is very specific to the circumstances on this premises.

We took swift action to limit the spread of the disease at the site in question, all infected birds are being humanely culled, and cleansing and disinfection of the premises will be undertaken all to strict biosecure standards. This is a reminder that stringent biosecurity is essential when keeping animals.

We are seeing a growing number of avian flu cases in birds on both commercial farms and in backyard flocks across the country. Implementing scrupulous biosecurity measures will help protect the health and welfare of your birds from the threat of avian influenza and other diseases.

Andrew Gwynne, Minister for Public Health and Prevention, said:

''The safety of the public is paramount, and we are monitoring this situation closely.

The risk of wider or onward transmission is very low, however the UK remains prepared and ready to respond to any current and future health threats.

We recently added the H5 vaccine, which protects against avian influenza, to our stockpile as part of our preparedness plans.

UKHSA will publish further details about the confirmed human case in due course.

Source: UK Health Security Agency, https://www.gov.uk/government/news/human-case-of-avian-flu-detected-in-england#:~:text=UKHSA%20confirms%20rare%20case%20of,in%20the%20West%20Midlands%20region.&text=UKHSA%20has%20confirmed%20a%20case,of%20times%20in%20the%20UK.

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#Isolation and Characterization of #H1 Subtype #Swine #Influenza Viruses Recently Circulating in #China

Abstract

Pigs serve as a mixing vessel for influenza viruses and can independently promote the emergence of pandemic strains in humans. During our surveillance of pig populations from 2021 to 2023 in China, 11 H1 subtype swine influenza viruses (SIVs) were isolated. All viruses were reassortants, possessing internal genes of identical origins (PB2, PB1, PA, NP, M: pdm09/H1N1 origin, NS: North American triple reassortant origin). The H1N1 isolates were all the dominant G4 EA H1N1 viruses in China. Two H1N2 isolates carried early human pdm09/H1N1 HA genes, suggesting a possible pig-to-human transmission route. Mutations that dictate host range specificity were identified in all isolates, a phenomenon which may enhance the affinity to human receptors. These H1 subtype viruses effectively replicated both in vivo and in vitro without prior adaptation and exhibited different pathogenicity and growth characteristics. Some of the H1 viruses were even found to cause lethal infections in mice. Taken together, our study indicates that the H1 subtype SIVs recently circulating in China pose a potential threat to human health and emphasizes the importance of continuing to closely monitor their evolution and spread.

Source: Viruses, https://www.mdpi.com/1999-4915/17/2/185

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Improving #clinical #care of patients in #Nipah #outbreaks: moving beyond ‘compassionate use’

Summary

The 2024 Nipah outbreak in Kerala, India—its fifth in six years—and the recurring annual outbreaks in Bangladesh underscore the persistent threat posed by the Nipah virus (NiV) in the region. With a high mortality rate, human-to-human transmission potential, and the widespread presence of Pteropus bats, the natural reservoir, NiV remains a significant epidemic threat. Despite being a WHO priority pathogen, there has been no systematic effort to improve patient care for NiVD, leading to consistently poor outcomes. Current care relies on supportive measures and the ‘compassionate use’ of unapproved drugs like ribavirin and remdesivir. Drugs used ‘off-label’ during outbreaks can become the ‘standard of care’ without robust evidence of their safety or efficacy, complicating the testing of new therapies and perpetuating uncertainty about their true effectiveness. To improve NiVD care, we propose four key strategies: 1) Enhance early case detection, 2) optimize supportive care to improve outcomes and create a standard for future trials, 3) adopt a syndromic approach centered on encephalitis, and 4) explore innovative trial designs tailored to low case numbers as an alternative to ‘compassionate use’. By integrating these strategies, healthcare systems in NiV-endemic regions will be better equipped to manage both current and future outbreaks.

Source: Lancet Regional Health South-East Asia, https://www.thelancet.com/journals/lansea/article/PIIS2772-3682(24)00177-X/fulltext

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New incursions of #H5N1 clade 2.3.4.4b highly pathogenic avian #influenza viruses in wild #birds, South #Korea, October 2024

{Excerpt}

Highly pathogenic avian influenza (HPAI) subtype H5Nx viruses of the A/Goose/Guangdong/1/1996 (Gs/Gd) lineage have led to substantial economic losses within the poultry industry and represent an ongoing public health threat (1). The Gs/Gd lineage H5 viruses not only have evolved into 10 primary clades 0–9 with their subclades but are also reassorted with other influenza A viruses (2–4). Notably, since 2020, clade 2.3.4.4b HPAI H5N1 viruses have caused outbreaks across a broad geographic range, including Asia, Europe, Africa, North America, South America, and Antarctica (5–7). The infections of HPAI H5N1 viruses in mammals including wild, domestic, and humans underscore the potential zoonotic risk and pandemic potential of these evolving H5 viruses (8).

(...)

Source: Frontiers in Veterinary Sciences, https://www.frontiersin.org/journals/veterinary-science/articles/10.3389/fvets.2024.1526118/full

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#USA - High pathogenicity avian #influenza #H5N9 viruses (#poultry) (Inf. with) - Immediate notification

Highly pathogenic avian influenza (HPAI) H5N9, Eurasian lineage goose/Guangdong clade 2.3.4.4b and HPAI H5N1 clade 2.3.4.4b were confirmed in a commercial duck premises in Merced County, CA. This is the first confirmed case of HPAI H5N9 in poultry in the United States. The USDA Animal and Plant Health Inspection Service (APHIS), in conjunction with State Animal Health and Wildlife Officials, are conducting comprehensive epidemiological investigations and enhanced surveillance in response to the HPAI related events.

Source: WOAH, https://wahis.woah.org/#/in-review/6201

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#Bussuquara Virus: A Neglected #Orthoflavivirus with Broad Distribution Across Central and South #America and the #Caribbean

Abstract

Bussuquara virus (BSQV) was first discovered in the Brazilian Amazon in 1956. It is an arthropod-borne virus (arbovirus) in the genus Orthoflavivirus, family Flaviviridae. Since its discovery, BSQV has been sporadically detected across the South (Brazil, Columbia, and Argentina) and Central (Panama and Mexico) America and the Caribbean (Grenada), but there is minimal BSQV surveillance due to limited public health awareness and a lack of specific or sensitive diagnostics. BSQV exposure has been reported in a wide range of host and vector species, including humans. Little information is available in the literature and herein we summarize the published historical findings on BSQV and suggest a pathway for future studies to better understand its potential emergence into human populations.

Source: Viruses, https://www.mdpi.com/1999-4915/17/2/183

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Estimating the #generation time for #influenza #transmission using #household data in the #USA

Abstract

The generation time, representing the interval between infections in primary and secondary cases, is essential for understanding and predicting the transmission dynamics of seasonal influenza, including the real-time effective reproduction number (Rt). However, comprehensive generation time estimates for seasonal influenza, especially since the 2009 influenza pandemic, are lacking. We estimated the generation time utilizing data from a 7-site case-ascertained household study in the United States over two influenza seasons, 2021/2022 and 2022/2023. More than 200 individuals who tested positive for influenza and their household contacts were enrolled within 7 days of the first illness in the household. All participants were prospectively followed for 10 days, completing daily symptom diaries and collecting nasal swabs, which were then tested for influenza via RT-PCR. We analyzed these data by modifying a previously published Bayesian data augmentation approach that imputes infection times of cases to obtain both intrinsic (assuming no susceptible depletion) and realized (observed within household) generation times. We assessed the robustness of the generation time estimate by varying the incubation period, and generated estimates of the proportion of transmission occurring before symptomatic onset, the infectious period, and the latent period. We estimated a mean intrinsic generation time of 3.2 (95 % credible interval, CrI: 2.9–3.6) days, with a realized household generation time of 2.8 (95 % CrI: 2.7–3.0) days. The generation time exhibited limited sensitivity to incubation period variation. Estimates of the proportion of transmission that occurred before symptom onset, the infectious period, and the latent period were sensitive to variations in the incubation period. Our study contributes to the ongoing efforts to refine estimates of the generation time for influenza. Our estimates, derived from recent data following the COVID-19 pandemic, are consistent with previous pre-pandemic estimates, and will be incorporated into real-time Rt estimation efforts.

Source: Epidemics, https://www.sciencedirect.com/science/article/pii/S1755436525000039?via%3Dihub

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Sunday, January 26, 2025

The first reported case of #candidemia caused by the novel #Candida tropicalis diploid sequence type 1515

Abstract

Introduction

Since the dawn of the new millennium, Candida species have been increasingly implicated as a cause of both healthcare-associated as well as opportunistic yeast infections, due to the widespread use of indwelling medical devices, total parenteral nutrition, systemic corticosteroids, cytotoxic chemotherapy, and broad-spectrum antibiotics. Candida tropicalis is a pathogenic Candida species associated with considerable morbidity, mortality, and drug resistance issues on a global scale.

Methodology

We report a case of a 43-year-old man who was admitted to our hospital for further management of severe coronavirus disease 2019 (COVID-19) pneumonia. During his stay in the ward, he received systemic corticosteroids for a total duration of 32 days. A broad-spectrum antibiotic (piperacillin-tazobactam) was also given due to copious amounts of tracheostomy secretions.

Results

The patient’s fever recurred following an afebrile interval of 11 days, and C. tropicalis was cultured from his blood. The yeast was highly resistant to fluconazole and voriconazole but remained susceptible to echinocandins. Unfortunately, the patient was unable to receive any echinocandin and eventually succumbed to candidemia.

Conclusions

Multilocus sequence typing was used to characterize C. tropicalis as a novel diploid sequence type (i.e., 1515) that has not been previously reported.

Source: Journal of Infection in Developing Countries, https://www.jidc.org/index.php/journal/article/view/39863954

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Fire-Swept Hills, Tom Thomson (1915)

 


Public Domain.

Source: WikiArt, https://www.wikiart.org/en/tom-thomson/fire-swept-hills-1915

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#Hemagglutinin with a #polybasic #cleavage site confers high #virulence on #H7N9 avian #influenza viruses

Abstract

H7N9 avian influenza virus (AIV) first emerged in February 2013 in China, and early isolates were all low pathogenic (LP). After circulation for a few years in live poultry markets of China, LP H7N9 AIVs evolved into a highly pathogenic (HP) form in late 2016. Deduced amino acid sequence analysis of hemagglutinin (HA) gene revealed that all HP H7N9 AIVs have obtained four-amino-acid insertion at position 339-342 (H7 numbering), making the cleavage site from a monobasic motif (LP AIVs) to a polybasic form (HP AIVs). Notably, the polybasic cleavage site motifs are diversified, of which PEVPKRKRTAR↓GLF motif is prevalent. To elucidate the reasons accounting for its dominance, recombinant H7N9 virus carrying PEVPKRKRTAR↓GLF (rJT157-2) motif was generated based on LP H7N9 virus A/chicken/Eastern China/JT157/2016 (JT157). Besides, another two viruses containing PEVPKGKRTAR↓GLF (rJT157-1) and PEIPKRKRTAR↓GLF (rJT157-3) cleavage site motifs were also constructed as comparisons. We found that rJT157-2 showed better biological characterizations in vitro including replication kinetics, plaque size, thermal and acid stability. In addition, animal experiments demonstrated that rJT157-2 was more pathogenic to both chickens and mice with higher virus titers and induced more severe changes in the lungs. These results suggested that HP H7N9 viruses carrying PEVPKRKRTAR↓GLF motif in the HA cleavage site were most likely adaptive mutants during the evolution of H7N9 AIVs.

Source: Poultry Science, https://www.sciencedirect.com/science/article/pii/S0032579125000690?via%3Dihub

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Saturday, January 25, 2025

#Coronavirus Disease Research #References (by AMEDEO, January 25 '25)

 


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#Influenza and Other Respiratory Viruses Research #References (by AMEDEO, Jan. 25 '25)

 


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    Antiviral Res

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    Biochemistry

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    PLoS One

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    Respiratory virus detections in children presenting to an Australian paediatric referral hospital pre-COVID-19 pandemic, January 2014 to December 2019.
    PLoS One. 2025;20:e0313504.
    PubMed         Abstract available

  14. VALACHOVIC EL, Shishova E
    Seasonal and periodic patterns in US COVID-19 mortality using the Variable Bandpass Periodic Block Bootstrap.
    PLoS One. 2025;20:e0317897.
    PubMed         Abstract available

  15. MASUMOTO Y, Kawasaki H, Matsuyama R, Tsunematsu M, et al
    Class-specific school closures for seasonal influenza: Optimizing timing and duration to prevent disease spread and minimize educational losses.
    PLoS One. 2025;20:e0317017.
    PubMed         Abstract available

  16. SCACCABAROZZI D, Ponti J, Gioria S, Mehn D, et al
    Atmospheric pressure plasma jet for respiratory face masks decontamination and re-use: Considerations on microbiological efficacy, material impact and product lifecycle.
    PLoS One. 2025;20:e0313041.
    PubMed         Abstract available

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    Characteristics influencing COVID-19 testing and vaccination among Spanish-speaking Latine persons in North Carolina.
    PLoS One. 2025;20:e0317794.
    PubMed         Abstract available

  18. COMAKLI DUVAR N, Kabakus AK, Iyit N, Alkan O, et al
    A study on the determination of the factors affecting the happiness levels of older individuals during the COVID-19 pandemic in Turkish society.
    PLoS One. 2025;20:e0316000.
    PubMed         Abstract available

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    Protect or prevent? A practicable framework for the dilemmas of COVID-19 vaccine prioritization.
    PLoS One. 2025;20:e0316294.
    PubMed         Abstract available


    Proc Natl Acad Sci U S A

  20. DUCH RM, Loewen P, Robinson TS, Zakharov A, et al
    Governing in the face of a global crisis: When do voters punish and reward incumbent governments?
    Proc Natl Acad Sci U S A. 2025;122:e2405021122.
    PubMed         Abstract available

  21. KIRBY MB, Petersen BM, Faris JG, Kells SP, et al
    Retrospective SARS-CoV-2 human antibody development trajectories are largely sparse and permissive.
    Proc Natl Acad Sci U S A. 2025;122:e2412787122.
    PubMed         Abstract available

  22. FERRERI LM, Seibert B, Caceres CJ, Patatanian K, et al
    Dispersal of influenza virus populations within the respiratory tract shapes their evolutionary potential.
    Proc Natl Acad Sci U S A. 2025;122:e2419985122.
    PubMed         Abstract available


    Vaccine

  23. LIAO Z, Deng L, Luo J, Shi M, et al
    Association between adults' vaccine literacy and their intention to recommend older family members for influenza vaccine.
    Vaccine. 2025;48:126757.
    PubMed         Abstract available

  24. TRANTER I, Judd D, Stickley M, Vasant B, et al
    Promoting aged care COVID-19 and influenza vaccination through education of Australian residential aged care staff: A mixed methods project evaluation.
    Vaccine. 2025;48:126742.
    PubMed         Abstract available

  25. ROPER LE, Link-Gelles R, Surie D, DeCuir J, et al
    A framework for monitoring RSV prevention product effectiveness in the United States.
    Vaccine. 2025;45:126633.
    PubMed         Abstract available

  26. GIERSING B, Mo AX, Hwang A, Baqar S, et al
    Meeting summary: Global vaccine and immunization research forum, 2023.
    Vaccine. 2025;46:126686.
    PubMed         Abstract available

  27. DERMENCHYAN A, Choi KR, Bokhoor PR, Cho DJ, et al
    Receipt of respiratory vaccines among patients with heart failure in a multicenter health system registry.
    Vaccine. 2025;46:126682.
    PubMed         Abstract available

  28. NAZARENO AL, Wood JG, Muscatello DJ, Homaira N, et al
    Estimating the cost-effectiveness of maternal respiratory syncytial virus (RSV) vaccination in Australia: A dynamic and economic modelling analysis.
    Vaccine. 2024;46:126651.
    PubMed         Abstract available

  29. GRIMES DR
    Tortured confessions? Potentially erroneous statistical inferences may underpin misleading claims of harms in reanalyses of COVID-19 and HPV vaccines.
    Vaccine. 2024 Dec 25:126657. doi: 10.1016/j.vaccine.2024.126657.
    PubMed         Abstract available

  30. SAVULESCU C, Prats-Uribe A, Brolin K, Uuskula A, et al
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    PubMed         Abstract available

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    Vaccine safety surveillance in South Africa through COVID-19: A journey to systems strengthening.
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    PubMed         Abstract available


    Virology

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    PubMed         Abstract available

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    Immune responses to avian influenza viruses in chickens.
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    PubMed         Abstract available

#Remdesivir and #Obeldesivir Retain Potent #Antiviral Activity Against #SARS-CoV-2 #Omicron Variants

Abstract

As new SARS-CoV-2 variants continue to emerge, it is important to evaluate the potency of antiviral drugs to support their continued use. Remdesivir (RDV; VEKLURY®) an approved antiviral treatment for COVID-19, and obeldesivir (ODV) are inhibitors of the SARS-CoV-2 RNA-dependent RNA polymerase Nsp12. Here we show these two compounds retain antiviral activity against the Omicron variants BA.2.86, BF.7, BQ.1, CH.1.1, EG.1.2, EG.5.1, EG.5.1.4, FL.22, HK.3, HV.1, JN.1, JN.1.7, JN.1.18, KP.2, KP.3, LB.1, XBB.1.5, XBB.1.5.72, XBB.1.16, XBB.2.3.2, XBC.1.6, and XBF when compared with reference strains. Genomic analysis identified 29 Nsp12 polymorphisms in these and previous Omicron variants. Phenotypic analysis of these polymorphisms confirmed no impact on the antiviral activity of RDV or ODV and suggests Omicron variants containing these Nsp12 polymorphisms remain susceptible to both compounds. These data support the continued use of RDV in the context of circulating SARS-CoV-2 variants and the development of ODV as an antiviral therapeutic.

Source: Viruses, https://www.mdpi.com/1999-4915/17/2/168

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#Detection of low pre-existing #humoral #immunity against #influenza virus #H5N1 clade 2.3.4.4b in unexposed individuals

Abstract

The repeated spill-over of Influenza A virus H5N1 clade 2.3.4.4b from cattle to humans highlights the risk of a human H5N1 pandemic. Given the impact of pre-existing immunity on the course and severity of viral infections, we assessed in detail the humoral immunity against the H5N1 A/Texas/37/2024 isolate in H5N1-naive individuals. To this end, we performed complementary binding and neutralization assays on 66 subjects and ranked activities among a panel of 76 influenza A virus isolates. We detected low but distinct cross-neutralizing titers against A/Texas/37/2024 with a 3.9 to 15.6-fold reduction compared to selected H1N1 or H3N2 strains. Moreover, by cloning and evaluating 136 monoclonal antibodies from single memory B cells, we identified potent A/Texas/37/2024-neutralizing monoclonal antibodies in five out of six investigated individuals. These antibodies predominantly utilize VH1-69 gene segments, cross-neutralize H1, and compete with antibodies targeting the HA stem. Our findings demonstrate partial pre-existing humoral immunity to A/Texas/37/2024 in H5N1-naive individuals.

Source: BioRxIV, https://www.biorxiv.org/content/10.1101/2025.01.22.634277v1

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Friday, January 24, 2025

Novel introductions of #human-origin #H3N2 #influenza viruses in #swine, #Chile

Abstract

Influenza A virus (IAV) continuously threatens animal and public health globally, with swine serving as a crucial reservoir for viral reassortment and evolution. In Chile, H1N2 and H3N2 subtypes were introduced in the swine population before the H1N1 2009 pandemic, and the H1N1 was introduced from the H1N1pdm09 by successive reverse zoonotic events. Here, we report two novel introductions of IAV H3N2 human-origin in Chilean swine during 2023. Our study reveals a closer relationship between recent human seasonal H3N2 and novel swine strains. Interestingly, one strain maintains all the genes from the original human virus, but the other strain is already a reassortment of human H3N2 and an H1N2 previously observed on the farm. Observing global IAV sequences, a similar pattern was identified in the USA confirming the reverse zoonotic potential of current seasonal human H3N2 strains. These results highlight the importance of ongoing surveillance and reinforcing biosecurity in swine farms. These findings raise questions about their potential impact on viral dynamics in the swine population and public health, underscoring the need for further investigation into the origin and evolutionary dynamics of this emerging swine H3N2 reassortant virus.

Source: Frontiers in Veterinary Medicine, https://www.frontiersin.org/journals/veterinary-science/articles/10.3389/fvets.2024.1505497/full

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Phylogeography and biological characterization of #H12N2 virus isolated from whooper #swan in Central #China

Abstract

Wild birds and waterfowl serve as the natural reservoirs of avian influenza viruses (AIVs). When AIVs originating from wild birds cross species barriers to infect mammals or humans, they pose a significant threat to public health. The H12 subtype of AIVs primarily circulates in wild birds, with relatively few isolates reported worldwide, and the evolutionary and biological characteristics of H12 subtype AIVs remain largely unknown. In this study, we analyzed the spatiotemporal distribution of H12 subtype AIVs worldwide and conducted a comprehensive investigation into the evolutionary and biological characteristics of an H12N2 virus isolated from a whooper swan in Central China. Phylogenetic analysis revealed that the H12N2 isolate belongs to the Eurasian lineage, with its HA gene likely originating from a duck-derived H12N5 virus and its NA gene potentially derived from an H9N2 virus, indicating that it is a complex reassorted virus. Animal experiments in domestic ducks and chickens demonstrated that the virus replicates at low levels in the respiratory tract of poultry and exhibits moderate horizontal transmission in ducks. However, it is capable of efficient horizontal transmission in chickens. Mouse infection experiments revealed that the virus could be detected in the nasal turbinates and lungs of mice, indicating that the H12N2 virus can infect mice without prior adaptation. In vitro studies revealed that the virus replicates efficiently in MDCK cells, with significantly higher titers than those in DF1 cells. These findings, combined with the mouse infection results, suggest that the H12N2 virus poses a potential risk of mammalian infection. This study provides valuable insights regarding the characteristics of the H12N2 virus and highlights the importance of ongoing surveillance and risk assessment of AIVs originating from wild birds.

Source: Frontiers in Microbiology, https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2024.1536876/full

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#USA, Monitoring for Avian #Influenza A(#H5) Virus In #Wastewater (Jan 12-18 '25)

 {Excerpt}

Time Period: January 12 - January 18, 2025

-- H5 Detection: 35 sites (10.4%)

-- No Detection: 301 sites (89.6%)

-- No samples in last week: 62 sites




(...)

Source: US Centers for Disease Control and Prevention, https://www.cdc.gov/bird-flu/h5-monitoring/index.html

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#Portugal - #Influenza A #H5N1 viruses of high pathogenicity (Inf. with) (non-poultry including wild birds) (2017-) - Immediate notification

 Unspecified domestic birds in Leiria Region.

Source: WOAH, https://wahis.woah.org/#/in-review/6214

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