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Showing posts with the label astrovirus

Foraging #ecology drives viral community structure in #NZ's aquatic #birds

  Abstract Wild migratory birds play a major role in the global spread of viruses, yet the diversity, host range and transmission patterns of viruses harboured by migratory species in Aotearoa/New Zealand remain largely unknown . This knowledge gap is critical given New Zealand's position along major migratory flyways spanning Oceania, Antarctica and east Asia , where understanding viral diversity is key to assessing the risk of viral introductions such as highly pathogenic avian influenza virus and viral dispersal across these regions. To address this, we conducted the first large-scale metatranscriptomic survey of wild birds from New Zealand and its subantarctic islands , collecting 1,348 samples from 31 host species spanning four avian orders . We identified 118 avian viruses from 17 families , including 107 novel species , greatly expanding our knowledge of avian viral diversity. Viral communities differed significantly by host order and foraging behaviour, with scavenger birds...

#Genetic characterization of the #marmot gut #virome in high-altitude #Qinghai Province and identification of novel #viruses with zoonotic potential

ABSTRACT The high-altitude ecosystems of Qinghai Province, China, harbor unique viral communities shaped by extreme environmental conditions and host adaptations. This study presents a comprehensive genetic characterization of the marmot gut virome , revealing novel viral strains with zoonotic potential . Using viral metagenomics, we analyzed intestinal contents from 70 marmots collected from Chengduo and Maqin counties. Sequencing on the Illumina NovaSeq 6000 platform identified 19 viral genomes belonging to four major families : Adenoviridae, Astroviridae, Parvoviridae, and Picornaviridae , along with four novel circular Rep-encoding single-stranded DNA (CRESS DNA) viruses. Phylogenetic analyses demonstrated close relationships between marmot-derived strains and viruses from humans, bats, and other mammals , highlighting potential cross-species transmission risks . Notably, bat-associated adenoviruses showed closer phylogenetic proximity to human strains, while novel parvoviruses for...