Showing posts with label seasonal influenza. Show all posts
Showing posts with label seasonal influenza. Show all posts

Friday, August 7, 2026

#Influenza #H3N2 #epidemiology in #England during the 2025 to 2026 season: a mathematical modelling study

 


Abstract

Background

England experienced an unusually early and rapid increase in influenza A/H3N2 subclade K infections in 2025/26. Antigenic change and a fast selective sweep raised concerns over a potentially severe season. Building on analysis conducted as the subclade emerged, we aim to compare epidemic dynamics of the 2025/26 season to previous years and to model plausible epidemiological scenarios.

Methods

We compared peak epidemic growth rates and reproduction numbers across influenza seasons from 2011/12 to 2025/26 using routine surveillance data in England. Weekly epidemic growth rates were estimated using a Gaussian random walk model, and time-varying reproduction numbers using EpiEstim. We also developed an age-stratified transmission model and interactive web tool to explore scenarios varying immune escape, transmissibility, and seed date, using 2022/23 as a baseline season.

Results

Peak A/H3N2 growth rates and time-varying reproduction numbers for the 2025/26 season are of similar magnitude but earlier than previous severe seasons. Scenario analyses suggest early trends are compatible with moderate levels of immune escape, a 10% higher R0, or an earlier seed date, though it is not possible to distinguish the relative importance of these mechanisms from these data alone.

Conclusions

The 2025/26 influenza season is characterised by early but not unusually rapid growth. Earlier growth does not systematically lead to especially large epidemics due to earlier susceptible depletion combined with a dampening effect from school holidays. Laboratory evidence for antibody escape does not directly translate to large reductions in population immunity, supporting the need for complementary real-time epidemiological analyses and modelling.

Source: 


Link: https://www.nature.com/articles/s44528-026-00016-3

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Thursday, August 6, 2026

Detection and characterization of #antiviral #resistant viruses during the #influenza season of 2024–25

 


ABSTRACT

During the high severity season of 2024–25, CDC with public health partners sequenced and analyzed genomes of >10,000 influenza viruses for antiviral resistance markers. Available sequence-flagged and representative viruses were tested with antivirals using in vitro assays. In the US, three oseltamivir-resistant A(H3N2) viruses had treatment-emergent neuraminidase (NA) mutations, either E119V or R292K. Oseltamivir-resistant A(H1N1)pdm09 viruses with NA-H275Y were detected in 15 states, albeit at a low frequency (0.53%). They belonged to several phylogenetic groups, with hemagglutinin (HA) subclade D.3.1 combined with either NA subclade D.1 or D.2 being most common. Based on shared sequence data, nearly all H275Y viruses from Australia, Canada, and Chile also belonged to these HA and NA subclades. Conversely, most H275Y viruses (68/81) from China belonged to HA subclade C.1.9 and NA subclade D and shared the permissive mutation R257K. Influenza polymerase acidic (PA) mutations conferring 4- to 92-fold decreased baloxavir susceptibility were detected in nine influenza A viruses. Viruses with PA-I38T showed mild attenuation of replicative fitness in three cell lines. Based on available data, NA-H275Y and PA-I38T viruses were collected from patients with no exposure to antivirals. Baseline susceptibility to all US-approved influenza antivirals remained largely unchanged compared to previous seasons. All swine-origin viruses detected in the US had adamantane resistance-conferring marker, M2-S31N, but remained susceptible to other approved antivirals. Monitoring antiviral susceptibility has substantially improved with increased sequencing capacities and bioinformatic support at public health laboratories. Information gained through influenza surveillance has been used to guide recommendations on antiviral use.

Source: 


Link: https://journals.asm.org/doi/10.1128/spectrum.01514-26

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Saturday, August 1, 2026

#Influenza and Other Respiratory Viruses Research #References (AMEDEO, August 1 '26)

 


    Arch Virol

  1. LEE K, An SH, Heo GB, Lee YJ, et al
    Genomic characterization of H6N1 avian influenza viruses from wild birds and domestic ducks in the republic of Korea and Mongolia (2022-2024).
    Arch Virol. 2026;171:238.
    PubMed         Abstract available


    Biochem Soc Trans

  2. MADDUMAGE JC, Dow GR, Murdolo LD, Liwei Leong S, et al
    Deciphering influenza B virus-derived peptides and their presentation by HLA class I molecules.
    Biochem Soc Trans. 2026;54:1021-1052.
    PubMed         Abstract available


    BMC Pediatr

  3. IBRAHIM HM, Mansour MGE, Zaitoun R, Rushdy M, et al
    HLA-B class I allele associations with neurological complications in pediatric SARS-CoV-2 infection: a retrospective observational study.
    BMC Pediatr. 2026;26:691.
    PubMed         Abstract available


    Epidemiol Infect

  4. NAQVI OH, Wendelboe AM, Beasley WH, Tyungu DL, et al
    Epidemiological characteristics of paediatric COVID-19 and influenza co-infections in the United States, 2020-2024.
    Epidemiol Infect. 2026;154:e105.
    PubMed         Abstract available


    J Immunol

  5. CHEUNG MW, Choi JD, Stempak JM, Chandran V, et al
    T cell immunity to SARS-CoV-2 vaccination in inflammatory bowel disease patients treated with anti-cytokine biologics.
    J Immunol. 2026;215:vkag173.
    PubMed         Abstract available

  6. NELSON SA, Rattan A, Marathe B, White CL, et al
    Distinct kinetic features of innate and adaptive responses in influenza A versus influenza B-infected mice.
    J Immunol. 2026;215:vkag196.
    PubMed         Abstract available


    J Infect

  7. SANZ-MUNOZ I, Ciria-Gil CJ, Hernandez M, Santiago C, et al
    Pre-existing and Cross-Reactive Immunity to Avian Influenza H5N1 in Humans: Implications for Pandemic Risk and Vaccine Strategies.
    J Infect. 2026 Jul 30:106822. doi: 10.1016/j.jinf.2026.106822.
    PubMed         Abstract available


    J Virol

  8. MCCAFFREY KD, Esfahani BG, Elbehairy MA, McCormick AL, et al
    Molecular basis for protection and cross-protection by human antibodies targeting the parainfluenza virus hemagglutinin-neuraminidase protein.
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    PubMed         Abstract available

  9. CHEN X, Yan J, Li M, Liu H, et al
    c-Fos enhances influenza virus replication by stabilizing the M2 protein and promoting autophagosome accumulation.
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    PubMed         Abstract available


    JAMA

  10. BAUDIN F, Pouyau R, Subtil F, Jarrasse C, et al
    Prone Positioning in Infants With Acute Bronchiolitis: The PROPOSITIS Randomized Clinical Trial.
    JAMA. 2026;336:315-322.
    PubMed         Abstract available


    Pediatrics

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    Child Welfare System Involvement in the United States: 2016-2023.
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  12. MORENO-PEREZ D, Catalan-Fernandez E, Croche-Santander B, Rios-Hurtado JM, et al
    Nirsevimab and Hospitalization for Lower Respiratory Tract Infection During the Second Season.
    Pediatrics. 2026;158:e2025075562.
    PubMed         Abstract available


    PLoS Comput Biol

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    Population-level behavioral and structural drivers of COVID-19 vaccine uptake in the US.
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    PubMed         Abstract available

  14. BEAULIEU M, Hoze N, Vieillefond V, Goetschy T, et al
    Quantitative analysis of massive SARS-CoV-2 testing in the community in France in 2021-2022 reveals the associations of variant, vaccination, and age with viral dynamics in symptomatic individuals.
    PLoS Comput Biol. 2026;22:e1013811.
    PubMed         Abstract available


    PLoS One

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    Trends in the incidence of asthma, atopic dermatitis, and multiple sclerosis before, during, and after the COVID-19 pandemic in a US claims database.
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    PubMed         Abstract available

  16. BRANNON GE, Chatterjee K, Jang CY, Markham Shaw C, et al
    Perceptions of Spanish-language COVID-19 video messaging among the Hispanic community: A qualitative study in the United States of America.
    PLoS One. 2026;21:e0339634.
    PubMed         Abstract available

  17. NELSON AK, Everett M, Smith R, Rogers L, et al
    Death by incarceration: Detention duration, overdose, and COVID-19 in Los Angeles County Jails, 2008-2023.
    PLoS One. 2026;21:e0351332.
    PubMed         Abstract available

  18. CASTRO MONTEIRO F, Luiza C Wuillaume M, Linhares Veloso Filho C, Figueiredo K, et al
    Identifying cluster profiles based on barriers and facilitators to physical activity during COVID-19 confinement: A cross-sectional study using machine learning analysis.
    PLoS One. 2026;21:e0354036.
    PubMed         Abstract available

  19. SUN L, Jiang Z, Chen Y, Han M, et al
    Exploring the mechanism of Shuangyu Granule in regulating immune-inflammatory responses in influenza through UPLC-Orbitrap-MS/MS, GC-MS, and network target analysis.
    PLoS One. 2026;21:e0353259.
    PubMed         Abstract available

  20. ROY SS, Nguyen NT, Zuniga A, Sarhaddi F, et al
    Mission imputable: Effects of missing data processing on infectious disease detection and prognosis.
    PLoS One. 2026;21:e0320105.
    PubMed         Abstract available

  21. ABUSKA D, Dikme O, Dikme O, Yurttas TT, et al
    Age-stratified prognostic performance of hematologic inflammatory indices for 30-day mortality in emergency department patients with PCR-confirmed COVID-19: A cohort study from the pre-vaccination pandemic era.
    PLoS One. 2026;21:e0354809.
    PubMed         Abstract available

  22. CALLAGHAN CW
    Cultural tightness and scientific capacity: A cross-national study of their synergistic and conflicting roles in COVID-19 pandemic outcomes.
    PLoS One. 2026;21:e0330983.
    PubMed         Abstract available

  23. KEBEDE M, Kusheta G, Jemal M, Abdurehman K, et al
    Determinants of parental traditional medicine use for children during COVID-19 in Dire Dawa city administration, Eastern Ethiopia, 2023/24: Mixed community based cross-sectional study design.
    PLoS One. 2026;21:e0354889.
    PubMed         Abstract available

  24. LIM MS, Park C, Lee E, Ko SY, et al
    A multiplex dual-probe RT-LAMP assay for rapid subtype-specific detection of respiratory syncytial virus A and B.
    PLoS One. 2026;21:e0354914.
    PubMed         Abstract available


    Proc Natl Acad Sci U S A

  25. HAN AX, Hulme KD, Russell CA
    The global demand and potential public health impact of oral antiviral treatment stockpile for influenza pandemics.
    Proc Natl Acad Sci U S A. 2026;123:e2524161123.
    PubMed         Abstract available

  26. GERVAIS A, Marchal A, Maillard A, Le Voyer T, et al
    High risk of hypoxemic COVID-19 pneumonia in myasthenia gravis patients with type I IFN autoantibodies.
    Proc Natl Acad Sci U S A. 2026;123:e2518581123.
    PubMed         Abstract available


    Vaccine

  27. LIU B, Li F, Yang Y, Tu H, et al
    In-depth monitoring of host cell proteins in influenza vaccines throughout multi-step purification processes.
    Vaccine. 2026;88:128957.
    PubMed         Abstract available

  28. KOSTANYAN L, Fukase H, Rumyantsev A, Hashizume K, et al
    Immunogenicity, reactogenicity, and safety of an mRNA-based seasonal influenza and SARS-CoV-2 multicomponent vaccine, mRNA-1083, in adults aged >/=50 years in Japan.
    Vaccine. 2026;88:128961.
    PubMed         Abstract available

  29. WEI Z, Feng X, Sun Q, Chen D, et al
    Factors affecting parental practices and attitudes toward influenza vaccination for children in China.
    Vaccine. 2026;88:128988.
    PubMed         Abstract available

Friday, July 31, 2026

Pre-existing and Cross-Reactive #Immunity to Avian #Influenza #H5N1 in #Humans: Implications for #Pandemic #Risk and Vaccine Strategies

 


Highlights

    ° Evidence of cross-reactive antibodies to H5N1 in humans.

    ° Seasonal influenza may induce partial H5N1 cross-protection.

    ° H5N1 clade 2.3.4.4b shows expanded host range and spread.

    ° Role of viral glycoproteins in immune cross-reactivity.

    ° Implications of baseline immunity for H5N1 pandemic risk.


Abstract

Due to the continuous evolution of Influenza A viruses (IAVs), novel strains with efficient human-to-human transmission may emerge and cause future pandemics. Among these, highly pathogenic avian influenza (HPAI) H5N1 remains a major concern because of its impact on wildlife, livestock, and human health. The widespread circulation of H5N1 clade 2.3.4.4b, detected in hundreds of bird species and numerous mammals worldwide, highlights important changes in viral ecology and transmission, increasing its zoonotic and pandemic potential. This review summarizes current evidence on cross-reactive and cross-protective immunity to H5N1 in humans, focusing primarily on humoral immune responses. We examine the presence of pre-existing H5N1-reactive antibodies in individuals without known exposure and discuss how previous seasonal influenza infection or vaccination may contribute to their development. Particular attention is given to antibodies targeting conserved regions of hemagglutinin (HA), especially the stalk domain, as well as neuraminidase (NA), which may provide heterosubtypic protection. We also evaluate the ability of seasonal influenza vaccines and infections to induce cross-reactive responses against H5N1 and their potential role in partial protection or immune priming. Finally, we review current and emerging H5N1 vaccination strategies, including adjuvanted and mRNA-based platforms, and identify priorities for surveillance, population immunity assessment, and the development of broadly protective influenza vaccines.

Source: 


Link: https://www.journalofinfection.com/article/S0163-4453(26)00148-9/fulltext

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Wednesday, July 29, 2026

#Baloxavir, #favipiravir, or #oseltamivir in patients with non-severe symptomatic seasonal #influenza (AD ASTRA): a phase 2, open-label, adaptive, RCT

 


Summary

Background

The oral antiviral therapies baloxavir marboxil (hereafter baloxavir), favipiravir, and oseltamivir have not been simultaneously compared for the treatment of seasonal influenza. We aimed to determine their relative efficacies in accelerating viral clearance in patients with symptomatic influenza virus infection at low risk of progression to severe disease.

Methods

We conducted a phase 2, open-label, randomised, controlled, adaptive platform trial in patients aged 18–60 years in Thailand, Laos, Nepal, and Brazil, recruited in four hospital outpatient or primary care departments with acute influenza (≤ 4 days of symptoms) and a low risk of progression to severe disease. Patients were randomly assigned 1:1:1:1:1 using a centralised online app to receive baloxavir (single oral dose of 40 mg if bodyweight <80 kg or 80 mg if bodyweight ≥80 kg), favipiravir (oral loading dose of 1800 mg, followed by 1800 mg 12 h later, and then 800 mg twice daily for 4 days), oseltamivir (oral dose 75 mg twice daily for 5 days), no study drug, or another ongoing intervention (reported separately). Randomisation was stratified by site and used block sizes of 15. The primary endpoint was the rate of oropharyngeal influenza viral RNA clearance, estimated under a Bayesian hierarchical linear model fitted to the daily log10 oropharyngeal viral densities from day 0 to day 5. Analyses were conducted in the modified intention-to-treat population (mITT), defined as patients with PCR-confirmed influenza with more than 250 viral RNA copies per mL at randomisation. Intervention groups were assessed for superiority over the no study drug group (posterior probability >0·9 that the relative increase in viral clearance was ≥20%); if superiority was met, intervention groups were assessed for non-inferiority relative to baloxavir (posterior probability >0·9 that the relative reduction in viral clearance was ≤10%). Secondary outcomes included time to resolution of fever and time to resolution of all symptoms. The trial is registered with ClinicalTrials.gov (NCT05648448) and is ongoing.

Findings

Between Feb 22, 2023, and Dec 12, 2025, 944 patients with influenza virus infection were randomly assigned to baloxavir (n=199; mITT 163 [82%]), favipiravir (n=223; mITT 196 [88%]), oseltamivir (n=200; mITT 170 [85%]), no study drug (n=228; mITT 200 [88%]) or other interventions (n=94). 120 patients were excluded based on baseline viral density (≤250 copies per mL), and one participant withdrew before collection of quantitative PCR results on day 0. 457 (63%) patients in the mITT population were female and 272 (37%) were male. Compared with no study drug, viral clearance rates were accelerated by 86% (95% credible interval [CrI] 60–117) with baloxavir, 66% (45–94) with favipiravir, and 49% (28–74) with oseltamivir. For all interventions, the posterior probability that the relative increase in viral clearance was 20% or more was 1·0. Compared with baloxavir, oseltamivir was inferior (20% slower clearance, 95% CrI 6 to 32; posterior probability 0·93 that the relative reduction in viral clearance was <10%); non-inferiority could not be shown for favipiravir (10% slower clearance, 95% CrI –4 to 22; posterior probability 0·55 that the relative reduction in viral clearance was <10%). Median time to fever resolution was accelerated with all three antivirals compared with no study drug (absolute differences ranging from 0·5 days to 0·9 days), whereas time to resolution of all symptoms was not significantly different between groups. 31 adverse events of grade 3 or above occurred, five of which were considered severe (one in the favipiravir group, one in the oseltamivir group, and three in the no study drug group).

Interpretation

Oral baloxavir, favipiravir, and oseltamivir accelerated influenza viral clearance rates in adults with early non-severe seasonal influenza at low risk of progression to severe disease. Baloxavir had the greatest in-vivo antiviral efficacy, followed by favipiravir and oseltamivir. These antivirals shortened fever duration but showed no clear effects on time to complete symptom resolution. This pharmacometric approach can inform prioritisation of antiviral agents for further study and potential inclusion in pandemic stockpiles.

Funding

Wellcome Trust.

Source: 


Link: https://www.thelancet.com/journals/laninf/article/PIIS1473-3099(26)00255-0/fulltext

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Saturday, July 25, 2026

#Influenza and Other Respiratory Viruses Research #References (AMEDEO, July 25 '26)

 


    Ann Intern Med

  1. JOHNSON D, Quinn S, Algase LF, Watkins C Jr, et al
    Telemedicine Policy and Practice: A Position Paper From the American College of Physicians.
    Ann Intern Med. 2026 May 12. doi: 10.7326/ANNALS-25-04194.
    PubMed         Abstract available


    BMC Pediatr

  2. KHALILIAN MR, Goudarzi A, Karimi A, Fahimzad A, et al
    Echocardiographic assessment of cardiac involvement in pediatric COVID-19 patients: a cross-sectional study.
    BMC Pediatr. 2026;26:677.
    PubMed         Abstract available


    J Clin Microbiol

  3. LUUKINEN B, Lang M, Peltola M, Soinila A, et al
    From triplex to tetraplex: evaluation of the diagnostic accuracy of the new Roche Cobas Liat SARS-CoV-2, influenza A/B & RSV assay.
    J Clin Microbiol. 2026 Jul 20:e0027426. doi: 10.1128/jcm.00274.
    PubMed         Abstract available


    J Infect Dis

  4. ZHOU W
    Repeated Influenza Vaccination in Children: Effect Scale, Timing, and Causal Interpretation.
    J Infect Dis. 2026 Jul 24:jiag386. doi: 10.1093.
    PubMed        


    J Virol

  5. FAN M, Liu Z, Deng L, Zheng Y, et al
    LncRNA ckATP1A1-AS1 inhibits influenza A virus replication by mediating innate immune responses and suppressing viral nuclear import.
    J Virol. 2026 Jul 24:e0025926. doi: 10.1128/jvi.00259.
    PubMed         Abstract available

  6. ADENUGBA AR, Bohn P, Yu J, Fehrholz M, et al
    Sequence heterogeneity in pneumonia virus of mice reveals G gene-dependent modulation of virulence.
    J Virol. 2026;100:e0010326.
    PubMed         Abstract available

  7. MURRAY A, Nagaraj D, Schultz EM, Aloisio G, et al
    RSV can infect the human nasal epithelium via the basolateral route and shows distinct subgroup infectivity and basal cell tropism.
    J Virol. 2026;100:e0037426.
    PubMed         Abstract available

  8. AO Z, Vendramelli R, Buyu M, Truong T, et al
    A VSV-vector vaccine simultaneously targeting H5N1 hemagglutinin and matrix protein 2 induces robust neutralizing and ADCC antibody responses and provides full protection against lethal H5N1 infection in a mouse model.
    J Virol. 2026 Jun 16:e0009726. doi: 10.1128/jvi.00097.
    PubMed         Abstract available

  9. ZHANG Q, Xin J, Wang C, Zhang X, et al
    Cleavage of TOM1 by the SARS-CoV-2 main protease NSP5 prevents autophagic degradation of viral envelope.
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    PubMed         Abstract available

  10. GIL-REDONDO JC, Riomoros-Barahona V, Valiente L, Valbuena A, et al
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    PubMed         Abstract available

  13. YU H-M, Zhu M-L, Zhao Y-L, Tan J-X, et al
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    J Virol Methods

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    Epidemiological characteristics of respiratory syncytial virus in children during 2021-2024.
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    PubMed         Abstract available


    Pediatrics

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    Influenza, COVID-19, and RSV Vaccinations for Immunocompromised Children and Household Contacts.
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    PubMed         Abstract available


    PLoS Genet

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    Identifying severe COVID-19 risk variants modulating enhancer reporter activity in lung cells.
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    PLoS Med

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    Assessing spatial transmission risk of respiratory infectious diseases across cities of different socioeconomic tiers in China: A modelling study.
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    PubMed         Abstract available

  19. GRAIS RF
    Whose fears count? Legitimacy, trust and viral outbreak responses after COVID-19.
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    PubMed         Abstract available


    PLoS One

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    Partisan differences in healthcare decision-making: Evidence from a vaccine experiment.
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    PubMed         Abstract available

  21. SCHEPISI C, Ventura M, Di Napoli A, Aragona M, et al
    The effect of COVID-19 and socioeconomic inequalities on emergency department accesses for psychiatric conditions.
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  22. SUZUKI T, Kita Y, Yanagida K, Maeda K, et al
    Molecular signature of COVID-19 prior to its exacerbation by multi-omics survey.
    PLoS One. 2026;21:e0352423.
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  23. ELLIS K, Hall P, Robinson L, Ruiz S, et al
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    Spatial and neighborhood data in the collaborative cohort of cohorts for COVID-19 Research (C4R).
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    PLoS One. 2026;21:e0353266.
    PubMed         Abstract available

  26. HAMUNAKWADI DL, Smith SL
    The news media and the agenda for noncommunicable diseases before and during the COVID-19 pandemic: Losing the competition for coverage and framing responsibility for action in Malawi.
    PLoS One. 2026;21:e0341285.
    PubMed         Abstract available

  27. IBRAHIM S, Yakubu Y, Appiagyei K, Sylvester AFD, et al
    Factors associated with severe acute respiratory syndrome coronavirus-2 infection in Hohoe Municipality, Ghana: A case-control study.
    PLoS One. 2026;21:e0332561.
    PubMed         Abstract available


    Proc Natl Acad Sci U S A

  28. MISTRY HB
    Hazard curvature makes within-host variability costly for survival.
    Proc Natl Acad Sci U S A. 2026;123:e2610568123.
    PubMed         Abstract available


    Vaccine

  29. OKOLI GN, Sullivan SG, Harper DM, Tsang TK, et al
    A systematic meta-analytic comparative evaluation of seasonal influenza vaccine effectiveness from test-negative design studies in the Northern Hemisphere pre/post COVID-19 pandemic.
    Vaccine. 2026;88:128956.
    PubMed         Abstract available

  30. WANG WC, Alhashimi M, Gairola V, Murala MST, et al
    Lung-resident T-cell immunity dominates protection induced by an intranasal adenoviral nucleoprotein influenza vaccine.
    Vaccine. 2026;88:128962.
    PubMed         Abstract available


    Virology

  31. YOSHIDA K, Yamamoto S, Ogasawara N, Taniguchi K, et al
    Innate immune-regulated sulfated glycosaminoglycans are associated with progeny respiratory syncytial virus retention at the cell surface in immortalized cell lines.
    Virology. 2026;623:110974.
    PubMed         Abstract available

  32. DICKERSON A, Cruceanu A, Pokharel BR, Majumdar N, et al
    Deciphering the miR-29c-3p / TET3 regulatory axis within the SARS-CoV-2-infected midbrain.
    Virology. 2026;623:110989.
    PubMed         Abstract available

  33. WANG Z, Pan Q, Arduini A, Liang C, et al
    Identification of SARS-CoV-2 proteins suppressing host protein synthesis.
    Virology. 2026;623:111006.
    PubMed         Abstract available

  34. MANDVIWALA AS, Liman K, Huckriede ALW, Mishra AC, et al
    Evaluation of MPLA and chimeric TLR agonist adjuvants in RSV virus-like particle vaccines delivered by the intramuscular route.
    Virology. 2026;623:111007.
    PubMed         Abstract available

  35. ABDEL-MONEIM AS, Al-Balushi MS, Al-Jabri AA
    Post-COVID-19 immune dysregulation and autoimmune sequelae.
    Virology. 2026;623:111017.
    PubMed         Abstract available


    Virus Res

  36. TANG Y, Gao X, Ding H, Kong L, et al
    Biological Aging, Immune Phenotypes, and Susceptibility to COVID-19 and Sepsis: A Mendelian Randomization Study.
    Virus Res. 2026;370:199756.
    PubMed         Abstract available

Friday, July 24, 2026

Identifying the viral and #epidemiological factors behind the apparent global #extinction of #influenza B/Yamagata

 


Abstract

Until 2020, two lineages of the influenza B virus had co-circulated globally. Measures to control the COVID-19 pandemic led to a near-absence of influenza infections. While B/Victoria reemerged in late 2021, there have been no reports of B/Yamagata since the pandemic. To investigate which epidemiological and immunological factors were primarily responsible for the extinction of B/Yamagata, we developed a global model for the two influenza B lineages. To mimic the transmission impacts of the pandemic, we implemented a transient reduction in contacts and identified parameter values that recapitulated viral coexistence dynamic before the pandemic and the qualitative post-pandemic outcomes of B/Victoria (reemergence in late 2021) and B/Yamagata (extinction). Our results suggest that, rather than immunological or evolutionary mechanisms, the extinction of B/Yamagata was mainly driven by its lower basic reproduction number making the virus particularly vulnerable during the early phase of the pandemic. Stochastic simulations of our best-fitting model suggest that B/Victoria was also close to extinction during this period. We investigate the model to assess the feasibility of B/Victoria eradication through vaccination and the potential for a sustained re-emergence of B/Yamagata in the 2026-27 flu season, thus highlighting important considerations for biosafety.


Competing Interest Statement

The authors have declared no competing interest.

Source: 


Link: https://www.medrxiv.org/content/10.64898/2026.07.22.26358639v1

____

Tuesday, July 21, 2026

Loss of #hemagglutination ability by #H3N2 #influenza A virus, subclade K.

 


Abstract

Seasonal human H3N2 influenza viruses, subclade K (J.2.4.1), have been the predominant influenza A viruses in the Northern hemisphere influenza season of 2025/2026. Since 2024, the vaccine virus A/Darwin/6/21 has emerged in different antigenic variants. Antigenic changes are frequently caused by amino acid substitutions near the hemagglutinin (HA) receptor-binding pocket, which can also affect receptor binding properties, such as hemagglutination. Hemagglutination is crucial for assessing antigenicity using the hemagglutination inhibition (HAI) assay, and a loss of binding to turkey erythrocytes could significantly hamper this process. In this study, we explored how substitutions in or around the HA receptor-binding site affect binding to glycans at the molecular level. We employed ELISA, glycan array, flow cytometry, hemagglutination assays, and tissue staining. Substitutions at positions 140, 192, and 223 establish clade J viruses that emerged in 2024. Computational analysis of HA in complex with an elongated glycan reveals that mutation F192 forms a CH-Pi interaction to stabilize the binding. Based on this background, substitutions in antigenic sites A and B within subclade K viruses exhibit a binding preference for elongated glycans, which are not displayed on turkey erythrocytes. Conversely, our previously established glyco-remodeled erythrocytes are efficiently bound by these subclade K H3N2 viruses and could support influenza surveillance and vaccine development.


Competing Interest Statement

The authors have declared no competing interest.


Funder Information Declared

CSC fellowship, (202209120001)

National Institute of Allergy and Infectious Diseases, R01 AI165692

Source: 


Link: https://www.biorxiv.org/content/10.64898/2026.07.20.739523v1

____

Sunday, July 19, 2026

#Influenza and Other Respiratory Viruses Research #References (AMEDEO, July 19 '26)

 


    BMC Pediatr

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    PubMed         Abstract available

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    Trends in pediatric household cleaning product exposures before and during the COVID-19 pandemic: a national poison data system analysis (2016-2023).
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    Epidemiol Infect

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Saturday, July 11, 2026

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    BMC Pediatr

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    PubMed         Abstract available

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    Epidemiol Infect

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    PubMed         Abstract available


    J Clin Microbiol

  5. MCTAGGART LR, Eshaghi A, Cronin K, Patel SN, et al
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    J Infect

  6. LI Y, Zhang T, Gao J
    Home-Based Rapid Testing and Early Antiviral Treatment as a Potential Strategy to Blunt Pediatric Influenza Peak.
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    PubMed        


    J Infect Dis

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    J Virol

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    MMWR Morb Mortal Wkly Rep

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    PLoS One

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    Vaccine

  27. ZHANG L, Lin T, Wang M, Ma X, et al
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Sunday, July 5, 2026

#Influenza and Other Respiratory Viruses Research #References (AMEDEO, July 5 '26)

 


    Ann Intern Med


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    PubMed        

  2. XIE Y, Choi T, Al-Aly Z
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    PubMed         Abstract available


    Antiviral Res

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    Arch Virol

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    PubMed         Abstract available

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    BMC Pediatr

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    PubMed        


    J Gen Virol

  18. KUOK DIT, Ma APY, Ching RHH, Ng KC, et al
    Assessment of influenza virus and coronavirus tropism, replication competence and disease severity in ex vivo and in vitro cultures of the human respiratory tract.
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    PubMed         Abstract available


    J Virol

  19. LI P, Zheng Y-M, Liu S-L
    Altered infectivity, cell-cell fusion, and immune evasion of SARS-CoV-2 BA.3.2 and LP.8.1 variants.
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    Age-dependent expression and antiviral activity of interferon epsilon in respiratory epithelium.
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    PubMed         Abstract available

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    Tonic and early interferons defend against respiratory viruses in primary human lung organoid-derived air-liquid interface cultures.
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  22. FAN L, Gao X, Feng W, Huang Q, et al
    SARS-CoV-2 ORF3a suppresses host antiviral interferon responses by promoting STUB1-mediated PTEN proteasomal degradation.
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  23. SUSMA B, Spronken M, van Nieuwkoop S, Kalverda B, et al
    Increased or decreased numbers of CpG dinucleotide motifs in the genome of influenza A virus do not affect in vitro virus phenotype.
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    PubMed         Abstract available

  24. ZHANG Q, Zhang Y, Sun H, Li H, et al
    Single-cell and spatial transcriptomic profiling reveals distinct immune landscapes in murine lungs infected with H1N1 versus H5N1 influenza viruses.
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  25. KATO K, Okamura K, Nakamura Y, Iwata M, et al
    Influenza A virus infection induces initial proliferation of commensal Streptococcus pneumoniae in the larynx leading to dissemination into the lower respiratory tract.
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    Pediatrics

  26. GERHART J, Leister-Tebbe H, Chan PLS, McComsey GA, et al
    Nirmatrelvir/Ritonavir for the Treatment of COVID-19 in Children Aged 6 Years and Older.
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    PubMed         Abstract available

  27. ZMUDA E, Hannon TS, Valentic J
    The Role of the Pediatrician to Promote Effective Approaches for Child and Adolescent Nutrition in Schools: Policy Statement.
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    Long-Term Outcomes of Multisystem Inflammatory Syndrome in Children up to 4.5 Years After COVID-19.
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    PubMed         Abstract available


    PLoS One

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    Circulating biomarkers of bronchoalveolar injury help predict the need for mechanical ventilation in patients with moderate to severe COVID-19 pneumonia: A prospective cohort study.
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    PubMed         Abstract available

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    Forecasting COVID-19 new cases using NBEATS deep learning and mobility data.
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    PubMed         Abstract available

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