Showing posts with label abstract. Show all posts
Showing posts with label abstract. Show all posts

Saturday, June 6, 2026

#Bundibugyo virus disease #outbreak in #DRC: current #trajectory and potential #risk for a Pandemic Emergency

 


{Excerpt}

On May 15, 2026, DR Congo declared the 17th orthoebolavirus disease outbreak—the third in the country in two decades caused by the Bundibugyo virus variant (Orthoebolavirus bundibugyoense)—in the conflict affected north-eastern province of Ituri.1 The next day, the WHO Director-General determined this event a Public Health Emergency of International Concern (PHEIC) and on May 18, the Africa Centres for Disease Control and Prevention (CDC) declared a Public Health Emergency of Continental Security.2 10 days earlier, WHO received an alert about a cluster of unexplained deaths, including deaths among health workers, in the Mongbwalu Health Zone. Initial laboratory results were negative for orthoebolavirus and reagents from Ituri were reasonably provisioned for Ebola virus.1

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Source: 


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#Human ACE2‑specific benzothiazole-based allosteric #inhibitor against pan ‑ #sarbecoviruses

 


Abstract

Emerging SARS‑CoV‑2 variants and related zoonotic sarbecoviruses rely on ACE2 for cell entry, motivating host‑directed antivirals that block spike-ACE2 interaction. Here, we characterize MB‑32, a benzothiazole small molecule that binds ACE2, selectively disrupts binding of SARS‑CoV‑2 spike receptor‑binding domain to ACE2, and preserves ACE2 enzymatic activity across species. MB‑32 potently inhibits entry of SARS‑CoV‑2 variants, SARS‑CoV‑1 and diverse bat/pangolin sarbecoviruses in ACE2‑expressing cells, while sparing vesicular stomatitis virus and authentic MERS‑CoV, indicating non‑virucidal, ACE2‑focused activity. Biochemical and biophysical analyses, supported by ACE2 mutagenesis, support a model in which MB‑32 engages a non‑catalytic surface pocket on the ACE2 N‑terminal helix to allosterically disrupt spike attachment. Intranasal MB‑32 achieves high airway concentrations, protects male ACE2‑transgenic mice and hamsters from SARS‑CoV‑2 disease, and prevents contact transmission of Omicron‑lineage viruses without detectable cardiovascular toxicity. These findings establish MB‑32 as a host‑targeted ACE2 entry inhibitor and provide a framework for small‑molecule ACE2‑directed antivirals against current and future sarbecovirus spillovers.

Source: 


Link: https://www.nature.com/articles/s41467-026-73944-x

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Cross-reactive #Bundibugyo #antibody responses after licensed #Ebola #vaccines

 


Abstract

Background 

The ongoing Bundibugyo virus disease (BDBV) outbreak in Central Africa highlights the absence of approved vaccines specifically targeting BDBV. Whether licensed Zaire ebolavirus (EBOV) vaccines induce cross-reactive immunity against BDBV remains largely unknown.

Methods 

We performed an immunogenicity analysis using serum samples from participants enrolled in the PREVAC randomized clinical trial evaluating licensed Ebola vaccine strategies in West Africa. Samples collected at day 28 (D28) and month 3 (M3) following vaccination with rVSVΔG-ZEBOV-GP or Ad26.ZEBOV/MVA-BN-Filo were assessed using a multiplex Luminex assay against glycoproteins from multiple filoviruses, including EBOV Kikwit, EBOV Mayinga, BDBV, Sudan virus, Reston virus, and Marburg virus.

Results 

A total of 179 samples were analysed. Detectable cross-reactive antibody responses against BDBV were observed across vaccine groups, timepoints, and age categories. However, BDBV responses remained substantially lower than homologous EBOV responses. In rVSV recipients, median BDBV responses (net MFI) reached 282 (IQR 164–644) at D28 compared with 1788 (832–3311) against the homologous Kikwit antigen. Similar patterns were observed following rVSV booster vaccination and Ad26.ZEBOV/MVA-BN-Filo vaccination. The heterologous Ad26/MVA regimen demonstrated increasing BDBV responses between D28 and M3.

Conclusions 

Licensed EBOV vaccines induced detectable but quantitatively reduced cross-reactive antibody responses against BDBV. Although no direct assessment of vaccine efficacy against BDBV disease was possible, these findings support the plausibility of partial heterologous immunity following EBOV vaccination. In the absence of approved BDBV-specific vaccines, these data support the urgent evaluation of currently available Ebola vaccines during BDBV outbreaks and reinforce the importance of developing broadly protective pan-filovirus vaccines.


Competing Interest Statement

The authors have declared no competing interest.


Clinical Trial

NCT02876328

Source: 


Link: https://www.medrxiv.org/content/10.64898/2026.05.27.26354223v1

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The #canine respiratory #epithelium is a permissive #ecosystem for #influenza interspecies #transmission and emergence

 


Abstract

The outcome of virus spillover ranges from dead-end infections to pandemics and is underpinned by host-pathogen interactions as well as evolutionary and epidemiological processes. The emergence of novel influenza A viruses (IAVs) has been associated with reassortment events involving multiple species, highlighting the importance of reservoir and intermediate hosts in viral emergence. Highly pathogenic H5N1 IAVs of the 2.3.4.4b genotype have caused a panzootic affecting a broad range of mammals. The role of dogs -arguably the most popular companion animal and a natural host of IAVs- in the ecology of IAVs under this new zooepidemiological scenario is unknown. To address this, we characterised the glycome of the dog respiratory epithelium, infected canine tracheal explants with multiple IAVs (including canine H3N2 and H3N8, equine H3N8, avian H3N8 and H5N1, swine H1N1, human H1N1 and H3N2, and bovine H5N1 viruses), and determined their cellular tropism. We show that the respiratory tract of dogs presents abundant sialylated glycans known to act as IAV receptors. Further, most IAVs (including 2.3.4.4b viruses) infected and replicated in dog tracheas, targeting mainly ciliated cells. Serological testing showed evidence of influenza spillover infections in dogs from the UK. Overall, our results show that the canine respiratory tract can provide a suitable environment for the generation of new IAVs. Given the multi-host contact networks of dogs in nature, they could act as recipients, bridging hosts, and/or mixing vessels for multiple IAV lineages, playing a central role in the ecology of influenza emergence.


Competing Interest Statement

The authors have declared no competing interest.


Funder Information Declared

Medical Research Council, https://ror.org/03x94j517, MR/Y03368X/1, MC_UU_0034/2, MC_UU_0034/3

Biotechnology and Biological Sciences Research Council, BB/Y007093/1, BB/Y007298/1, BBS/E/PI/230001A, BBS/E/PI/230002A, BBS/E/PI/230002B, BBS/E/PI/230001C

Source: 


Link: https://www.biorxiv.org/content/10.64898/2026.06.04.730051v1

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#Coronavirus Disease Research #References (AMEDEO, June 6 '26)

 


    Ann Intern Med

  1. KOUTOURATSAS T, Dammad T, Mylonakis E
    In outpatients with COVID-19 during Omicron variant circulation, some antivirals reduce time to recovery.
    Ann Intern Med. 2026 Jun 2. doi: 10.7326/ANNALS-26-01878.
    PubMed         Abstract available


    Clin Infect Dis

  2. BONTEN M, Essink B, Hanning N, Leroux-Roels I, et al
    Immunogenicity and safety of co-administration of AS01E-adjuvanted respiratory syncytial virus prefusion F protein vaccine and a COVID-19 mRNA vaccine in adults aged >/=50 years: a phase 3, randomized, non-inferiority trial.
    Clin Infect Dis. 2026 Jun 4:ciag344. doi: 10.1093.
    PubMed         Abstract available

  3. BRAMANTE CT, Stewart TG, Boulware DR, McCarthy MW, et al
    Metformin on the Presence of COVID-19 Symptoms 6 Months after Infection: The ACTIV-6 Randomized Clinical Trial.
    Clin Infect Dis. 2026 Jun 4:ciag335. doi: 10.1093.
    PubMed         Abstract available

  4. LIU C, Okoli GN, Chen R, Sullivan SG, et al
    SARS-CoV-2 vaccination and attenuation of breakthrough infection severity: A systematic global review and meta-analysis.
    Clin Infect Dis. 2026 Jun 1:ciag346. doi: 10.1093.
    PubMed         Abstract available


    Infect Control Hosp Epidemiol

  5. JURICA JM, Smith DM, Abeles S, Torriani FJ, et al
    Discontinuing contact precautions for COVID-19: the science says its time.
    Infect Control Hosp Epidemiol. 2026 Jun 5:1-3. doi: 10.1017/ice.2026.10482.
    PubMed         Abstract available

  6. ALSOUBANI M, Andujar G, Campion M
    Socioeconomic and racial review of COVID-19 antiviral prescriptions: a large health system cohort.
    Infect Control Hosp Epidemiol. 2026 Jun 1:1-6. doi: 10.1017/ice.2026.10473.
    PubMed         Abstract available


    Int J Infect Dis

  7. VEIJER C, van Asselt ADI, van Zon SKR, Rosmalen JGM, et al
    Healthcare Resource Use and Costs under Pandemic Circumstances in The Netherlands: Results from the Lifelines COVID-19 Cohort.
    Int J Infect Dis. 2026 Jun 3:108854. doi: 10.1016/j.ijid.2026.108854.
    PubMed         Abstract available

  8. ABU-RADDAD LJ, Ayoub HH, Coyle P, Tang P, et al
    Routine SARS-CoV-2 Testing Frequency and Risk of Severe COVID-19: A Nationwide Population-Based Study.
    Int J Infect Dis. 2026 Jun 2:108851. doi: 10.1016/j.ijid.2026.108851.
    PubMed         Abstract available

  9. LAW AHT, Wong JY, Lin Y, Cowling BJ, et al
    Sex differences in COVID-19 infection and mortality in Hong Kong.
    Int J Infect Dis. 2026 Jun 2:108852. doi: 10.1016/j.ijid.2026.108852.
    PubMed         Abstract available

  10. LIN Y, Wu P, Lau EHY, Blais J, et al
    SARS-CoV-2 viral shedding and vaccination?modified effects of oral antivirals in older COVID-19 patients: a retrospective cohort study in Hong Kong.
    Int J Infect Dis. 2026 Jun 1:108848. doi: 10.1016/j.ijid.2026.108848.
    PubMed         Abstract available


    J Med Virol

  11. CHEN Y, Lan Y, Zhao A, Zhang Y, et al
    Anti-Zika Virus Activity of Azvudine via Inhibition of RNA Replication by Its Active Triphosphate Form.
    J Med Virol. 2026;98:e71000.
    PubMed         Abstract available


    J Thorac Oncol

  12. XU X, Saad MB, Grippin A, Xu H, et al
    Brief Report: SARS-CoV-2 mRNA Vaccination Improved Survival in NSCLC Treated with Radiotherapy.
    J Thorac Oncol. 2026 Jun 1:103956. doi: 10.1016/j.jtho.2026.103956.
    PubMed         Abstract available


    J Virol

  13. FAN L, Gao X, Feng W, Huang Q, et al
    SARS-CoV-2 ORF3a suppresses host antiviral interferon responses by promoting STUB1-mediated PTEN proteasomal degradation.
    J Virol. 2026 Jun 2:e0018626. doi: 10.1128/jvi.00186.
    PubMed         Abstract available


    Lancet

  14. KARIM SA, Mahomed S, Lewis L, Karim SSA, et al
    Urgent need for a reliable rapid diagnostic test for the Ebola epidemic caused by Bundibugyo virus in Africa.
    Lancet. 2026 Jun 2:S0140-6736(26)01093-7. doi: 10.1016/S0140-6736(26)01093.
    PubMed        


    Lancet Infect Dis


  15. Global burden of enteric infectious diseases, diarrhoeal diseases, and corresponding aetiologies, 1990-2023: a systematic analysis for the Global Burden of Disease Study 2023.
    Lancet Infect Dis. 2026 Jun 2:S1473-3099(26)00194.
    PubMed         Abstract available


    Science

  16. EMANUEL N, Harrington E, Pallais A
    Home alone: Remote work, isolation, and mental health.
    Science. 2026;392:eaec7671.
    PubMed         Abstract available

#Influenza and Other Respiratory Viruses Research #References (AMEDEO, June 6 '26)

 


    Arch Virol

  1. PERDANA WY, Tsuneki-Tokunaga A, Rahmi KA, Hinay AA Jr, et al
    In vitro efficacy of anti-influenza active compounds against clinical isolates with high growth capability.
    Arch Virol. 2026;171:200.
    PubMed         Abstract available


    Biochem Biophys Res Commun

  2. SHAO S, Dong ZY, Kang ZY, Zhang H, et al
    Dynamic regulation-based stabilizing mutations are highly effective for designing RSV pre-fusion F mRNA vaccines.
    Biochem Biophys Res Commun. 2026;825:153958.
    PubMed         Abstract available


    Epidemiol Infect

  3. SANE J
    Rebuilding trust in public health: Beyond polarization.
    Epidemiol Infect. 2026;154:e71.
    PubMed         Abstract available

  4. HASSELL K, Andrews N, Dabrera G, Kall M, et al
    Acute COVID-19 mortality in England in the omicron era: a national-level matched cohort study.
    Epidemiol Infect. 2026;154:e70.
    PubMed         Abstract available


    J Infect Dis

  5. PRASERT K, Praphasiri P, Ditsungnoen D, Naosri S, et al
    Risk of hospitalization related to influenza A(H3N2) virus subclade K, Thailand, June-December 2025.
    J Infect Dis. 2026 May 31:jiag283. doi: 10.1093.
    PubMed         Abstract available


    J Neurosurg Pediatr

  6. ANDERSON MG, Pindrik J, Michelow IC, Anuar A, et al
    Pediatric sinogenic and otogenic intracranial infections requiring neurosurgical intervention: a North American multicenter study in the era of COVID-19.
    J Neurosurg Pediatr. 2026;37:621-631.
    PubMed         Abstract available


    J Virol


  7. CEIRR Risk Assessment Pipeline executive reports on H5N1 highly pathogenic avian influenza 2.3.4.4b, swine H1 1B.2, and H9N2 low pathogenicity avian influenza B4.7.2.
    J Virol. 2026 Jun 3:e0054526. doi: 10.1128/jvi.00545.
    PubMed         Abstract available

  8. STEARNS K, Marcink T, Pawlack E, Sobolik EB, et al
    Human parainfluenza virus 3 fusion protein cleavage: a key determinant of infection and spread.
    J Virol. 2026 Jun 3:e0212625. doi: 10.1128/jvi.02126.
    PubMed         Abstract available

  9. TURNER AH, Jaffrani SA, Kubinski HC, Ajayi DP, et al
    Rab11B is required for binding and entry of recent H3N2, but not H1N1, influenza A isolates.
    J Virol. 2026 Jun 2:e0211125. doi: 10.1128/jvi.02111.
    PubMed         Abstract available


    Pediatrics

  10. ROSTAD CA, Healy CM, Nayak JL, Parameswaran L, et al
    Maternal RSV Vaccination, Infant Nirsevimab, or Both: Interim Analysis of a Randomized Trial.
    Pediatrics. 2026 May 4:e2025075223. doi: 10.1542/peds.2025-075223.
    PubMed         Abstract available


    PLoS One

  11. EKWUNIFE O, Mangenah C, Ngwira L, Corbett E, et al
    Economic barriers to diagnostic equity: A multi-country analysis of patient costs for rapid SARS-CoV-2 testing in sub-Saharan Africa.
    PLoS One. 2026;21:e0350288.
    PubMed         Abstract available

  12. HEMBERG M, Hansen AL, Storgaard J, Blay-Cadanet J, et al
    MAVS is important for antiviral defense against influenza A virus in a human respiratory epithelium model.
    PLoS One. 2026;21:e0350839.
    PubMed         Abstract available


    Proc Natl Acad Sci U S A

  13. RIKANI A, Di Domenico L, Sabbatini CE, Navarro V, et al
    Resetting population mobility responses under repeated nonpharmaceutical interventions: Implications for hypothesized pandemic fatigue.
    Proc Natl Acad Sci U S A. 2026;123:e2533284123.
    PubMed         Abstract available

  14. PAPADAKI M, Pavlos E, Dubourdeau M, Bailif V, et al
    Polyunsaturated fatty acid-derived lipid mediator patterns determine viral pneumonia severity and risk for critical COVID-19.
    Proc Natl Acad Sci U S A. 2026;123:e2534726123.
    PubMed         Abstract available

  15. GRUNDY JG, Pujols-Beltran M
    Bilingualism predicts executive function resilience after COVID-19 in aging.
    Proc Natl Acad Sci U S A. 2026;123:e2532470123.
    PubMed         Abstract available


    Vaccine

  16. DE FIGUEIREDO A, Paterson P, Lin L, Mounier-Jack S, et al
    Changing socio-demographic determinants of seasonal influenza acceptance in England during the pandemic and a framework for predicting future acceptance.
    Vaccine. 2026;85:128629.
    PubMed         Abstract available

  17. DAS S, Tenaglia BM, Riley D, Speed S, et al
    BECC-adjuvanted hemagglutinin influenza vaccine promotes enhanced immunogenicity and protective efficacy.
    Vaccine. 2026;87:128774.
    PubMed         Abstract available


    Virus Res

  18. SEDAGHAT M, Najafi F, Khosravi Shademani F, Rezaeian S, et al
    Seasonal influenza vaccine and frequency of adverse events in health workers receiving two doses of AstraZeneca vaccine: a retrospective cohort study.
    Virus Res. 2026;369:199757.
    PubMed         Abstract available

Friday, June 5, 2026

Modeled #Scenario #Projections for the #Ebola Disease #Outbreak Caused by #Bundibugyo Virus, 2026 (MMWR)

 


Summary

    -- What is already known about this topic?

        ° An outbreak of Bundibugyo virus disease (BVD), a type of Ebola disease, is currently ongoing, centered in the Ituri province of the Democratic Republic of the Congo (DRC).

    -- What is added by this report?

        ° CDC used a transmission model to project outbreak growth over 3 months, by using different assumptions about the number of deaths as of May 24, 2026, and by varying the percentages of persons with BVD who are successfully identified and isolated to prevent ongoing transmission. Assuming 50 cumulative deaths as of May 24, 2026, if 70% of patients were to enter isolation, only approximately one in 20 simulations projected an outbreak exceeding 10,000 cases within 3 months.

    -- What are the implications for public health practice?

        ° Large-scale, rapid public health action is needed to control the current outbreak, already the largest known BVD outbreak, from becoming one of the largest Ebola epidemics in history.


Abstract

On May 15, 2026, the Ministries of Health in the Democratic Republic of the Congo and Uganda declared outbreaks of Bundibugyo virus disease (BVD), a type of Ebola disease. In response to reports of high numbers of suspected cases and deaths in these outbreaks, CDC simulated scenario projections to understand possible future morbidity and mortality. A branching process model with the capacity to model transmission-reducing nonpharmaceutical interventions was calibrated to three putative cumulative death counts and projected for four possible intervention scenarios ranging from poor (20%) to extremely high (95%) levels of isolation and treatment of symptomatic persons. The analysis suggested a plausible spillover event (i.e., the transmission of a virus from its natural animal reservoir to humans) in mid to late February 2026. With poor isolation levels of patients with BVD (20%) and no other interventions, the likelihood of an outbreak that exceeds 20,000 cases within 3 months is 65%. If, however a high proportion of patients were to enter isolation (70%), only a one in 20 chance is projected for an outbreak with ≥10,000 cases within 3 months. These results underscore the importance of strong public health interventions, because the current outbreak is already the largest known BVD outbreak and has the potential to quickly become one of the largest Ebola disease outbreaks ever recorded.

Source: 


Link: https://www.cdc.gov/mmwr/volumes/75/wr/mm7522e1.htm?s_cid=mm7522e1_e&ACSTrackingID=USCDC_921-DM155686&ACSTrackingLabel=Early%20Release%20%E2%80%93%20Vol.%2075%2C%20June%205%2C%202026&deliveryName=USCDC_921-DM155686

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#Assessment of #Risk to the #US #Population from the #Ebola Disease #Outbreak Caused by #Bundibugyo Virus, 2026 (MMWR)

 


Summary

    -- What is already known about this topic?

        ° An outbreak of Bundibugyo virus disease (BVD), a type of Ebola disease, is currently occurring, centered in the Ituri province of the Democratic Republic of the Congo (DRC).

    -- What is added by this report?

        ° CDC assessed the risk posed by this ongoing outbreak to the U.S. population during the next 3 months as low.

    -- What are the implications for public health practice?

        ° Ensuring sufficient public health resources to control the outbreak in DRC will be necessary for maintaining a low risk to the U.S. population. If cases arise in the United States, there is public health capacity to contain and control an outbreak, and CDC guidance for U.S. clinicians and public health practitioners can help prevent the potential spread.


Abstract

On May 15, 2026, the ministries of health in the Democratic Republic of the Congo and Uganda declared outbreaks of Bundibugyo virus disease (BVD), a type of Ebola disease. In response to reports of high numbers of suspected cases and deaths in the affected countries, CDC assessed the risk posed by the BVD outbreak to the U.S. population during the next 3 months. This analysis used a standardized risk assessment approach that included epidemiologic data from the ongoing outbreak and historical data from previous Ebola outbreaks; the overall risk was determined by taking into account independent assessments of the likelihood of infection and the impact of infection. The assessment found that the overall risk to the U.S. population posed by the current BVD outbreak during the next 3 months is low, based on the extremely low likelihood of transmission, despite the high impact that potential infection could have and the resources that would be required to respond to the outbreak. Limitations to this assessment included uncertainties around the epidemiology of BVD as well as the current and future scope and geographic spread of the outbreak. CDC continues to monitor factors that could change this risk assessment.

Source: 


Link: https://www.cdc.gov/mmwr/volumes/75/wr/mm7522e2.htm?s_cid=mm7522e2_e&ACSTrackingID=USCDC_921-DM155686&ACSTrackingLabel=Early%20Release%20%E2%80%93%20Vol.%2075%2C%20June%205%2C%202026&deliveryName=USCDC_921-DM155686

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Notes from the Field: #Outbreak of #Ebola Disease Caused by #Bundibugyo Virus — #DRC and #Uganda, May 2026 (MMWR, edited)

 


Summary

    ° What is already known about this topic?

        ° Bundibugyo virus has caused two previous Ebola disease outbreaks in the Democratic Republic of the Congo (DRC) and Uganda.

    ° What is added by this report?

        ° In May 2026, a large outbreak of Bundibugyo virus disease was identified in DRC and Uganda. As of June 2, a total of 378 confirmed cases and 63 confirmed deaths have been reported. No cases have been reported in the United States.

    ° What are the implications for public health practice?

        ° To help reduce the risk for continued spread of Bundibugyo virus, including potential spread beyond DRC and Uganda or importation to the United States, ongoing collaboration between CDC and international partners and coordination among U.S. government agencies are essential.


Abstract

Bundibugyo virus disease (BVD) is a type of Ebola disease, a severe and often fatal viral hemorrhagic fever (1). Bundibugyo virus was first identified in 2007, when it caused an outbreak in Uganda with 149 suspected cases and 37 deaths (2). A 2012 BVD outbreak in DRC resulted in 56 laboratory-confirmed cases and 17 deaths (3). On May 15, 2026, the ministries of health in the Democratic Republic of the Congo (DRC) and Uganda declared outbreaks of BVD. As of June 2, a total of 378 confirmed cases and 63 confirmed deaths have been reported.

Source: 


Link: https://www.cdc.gov/mmwr/volumes/75/wr/mm7522e3.htm?s_cid=mm7522e3_e&ACSTrackingID=USCDC_921-DM155686&ACSTrackingLabel=Early%20Release%20%E2%80%93%20Vol.%2075%2C%20June%205%2C%202026&deliveryName=USCDC_921-DM155686

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#Hantavirus #outbreak on a cruise #ship in the South Atlantic

 


{Excerpt}

On May 2, 2026, a cluster of severe respiratory illness among passengers aboard a cruise ship in the Atlantic was reported to WHO, and a suspected hantavirus outbreak was identified. The vessel departed from Ushuaia, Argentina, on April 1, 2026, carrying 147 individuals (88 passengers and 59 crew members) from 23 countries.1 This event raises concerns about surveillance, outbreak response, containment, and the potential for international spread of hantavirus. As of May 4, 2026, seven cases (two laboratory confirmed and five suspected) have been identified, including three deaths, corresponding to a crude case-fatality rate of more than 40%.1 All patients presented with fever or gastrointestinal symptoms, or both, with rapid progression to pneumonia, acute respiratory distress syndrome, and shock in severe cases.1 The overall attack rate was 4·8% (seven of 147 individuals on board infected).1

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Source: 


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Cruise #ship #hantavirus #outbreak in remote #island communities

 


On April 27, 2026, the Dutch-flagged expedition cruise ship MV Hondius arrived at Ascension Island, a remote mid-Atlantic UK Overseas Territory (UKOT). The vessel had left Ushuaia (Argentina) on April 1, 2026, then visited the Antarctic Peninsula and other UKOT islands in the south Atlantic: the British Antarctic Territory, South Georgia, Tristan da Cunha, and St Helena (figure).1 At Ascension Island, a 69-year-old man (case 3) with a severe respiratory syndrome was admitted into the care of the island's small medical team. This team resuscitated the patient and arranged for a medical evacuation service in South Africa to transfer him to intensive care in Johannesburg. 

(...)

Source: 


Link: https://www.thelancet.com/journals/lancet/article/PIIS0140-6736(26)01014-7/fulltext?rss=yes

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#SARS-CoV-2 #Omicron BA.2.86 and JN.1 expand #tropism in #human proximal #intestinal epithelium

 


Abstract

Omicron SARS-CoV-2 has diversified into multiple sub-lineages, complicating assessment of their intrinsic phenotypes due to background population immunity. We compare replication and biological characteristics of variants from BA.1 to JN.1 using human bronchial and lung explants, airway organoids, colon cells, and proximal intestinal enteroids. XBB.1.5 and EG.5.1 achieve higher replication titres in respiratory tissues than BA.2.86 and JN.1, indicating enhanced respiratory fitness. EG.5.1 displays dual cell-entry pathways and greater replication in alveolar epithelial cells, supporting increased lung tropism and pathogenicity. In contrast, BA.2.86 and JN.1 rely on TMPRSS2-mediated entry in airways. Notably, BA.2.86 and JN.1 replicate more efficiently than EG.5.1 in proximal intestinal enteroids in an ACE2- and TMPRSS2-dependent manner, but not in colon cells. JN.1 exhibits elevated intestinal tropism with limited proinflammatory cytokine induction, suggesting potential for faecal transmission. Here we show XBB.1.5 and EG.5.1 greater transmissibility and severity potential whereas BA.2.86 and JN.1 exhibit enhanced intestinal adaptation.

Source: 


Link: https://www.nature.com/articles/s41467-026-74111-y

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Broad heterologous #protection against #Influenza A viruses by an adjuvant-free modular mucosal T-cell #vaccine #platform

 


Abstract

Rapid antigenic evolution of Influenza A viruses (IAVs) enables their escape from strain-specific vaccine immunity, underscoring the need for broadly protective strategies. Here, we describe a modular, adjuvant-free mucosal vaccine platform that elicits potent and cross-protective T cell immunity. The approach uses overlapping CD4+ and CD8+ epitope-dense regions from the consensus IAV M1 and NP proteins, identified through computational and functional screening. These peptides are delivered using polylactic-co-glycolic acid (PLGA) microparticles, engineered for selective uptake by antigen-presenting cells and enabling sustained, pH-responsive antigen release. This design enhances antigen processing and MHC cross-presentation, functionally substituting for a conventional adjuvant. This formulation drives robust activation of primed human as well as murine CD4+ and CD8+ T cells and confers broad protection against homologous (H1N1, H3N2) as well as heterologous (H5N1) IAV strains in immunized mice. Overall, this adjuvant-free dose-sparing platform establishes an adaptable framework for next-generation broadly-protective vaccines against rapidly evolving viruses.


Competing Interest Statement

R.T.Y. and S.T. are co-inventors on an unpublished patent titled Immunogenic peptide(s), composition(s) and application(s) thereof broadly protective against Influenza, Indian patent application number 202541082426. The other authors declare that they have no competing interests.


Funder Information Declared

DBT-ENDFLU, BT/IN/EU-INF/15/RV/19-20

Source: 


Link: https://www.biorxiv.org/content/10.64898/2026.03.29.715080v2

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Thursday, June 4, 2026

#Scenario #analysis for potential #community spread of #Andes virus (ANDV)

 


Abstract

We simulated the potential community spread of Andes virus (ANDV) following the introduction of a single infectious individual in a generic population, based on epidemiological parameters derived from a human-to-human historical outbreak. Under current available evidence, our analyses suggest that, within 4 months from the index case’s symptom onset, the expected outbreak size is unlikely to exceed 50 cases, with a high probability of epidemic extinction, particularly when > 50% cases are effectively isolated from the start of the outbreak.

Source: 


Link: https://www.eurosurveillance.org/content/10.2807/1560-7917.ES.2026.31.22.2600425#abstract_content

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Why #Andes #hantavirus is not the next #SARS-CoV-2: contrasting viral shedding, #transmissibility and #genomic patterns

 


Abstract

A cruise ship-associated Andes hantavirus outbreak has raised questions usually associated with respiratory viruses, including transmissibility and pandemic risk. Although Andes virus may enter through the respiratory route, cause severe respiratory disease and under close contact spread between humans, it differs fundamentally from SARS-CoV-2. The ecology is rodent-borne, pathogenesis is vascular, diagnosis is centred on blood PCR and serology, and genetic diversity is mainly shaped by reservoir ecology and geography rather than by sustained human-to-human transmission and immune selection.

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Link: https://www.eurosurveillance.org/content/10.2807/1560-7917.ES.2026.31.22.2600428?emailalert=true#abstract_content

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Use of #tocilizumab for severe #hantavirus pulmonary syndrome: a MEURI case series with contextual comparisons

 


Summary

Background

Hantavirus pulmonary syndrome is a rare zoonotic disease associated with high mortality, acute respiratory failure, shock, capillary leak, and systemic inflammation. Currently, no specific antiviral or immunomodulatory therapy has proven effective for routine clinical use. The current cruise-associated hantavirus outbreak motivated this early descriptive report from an ongoing, larger, pre–post study (ISRCTN72088243). We aimed to describe tocilizumab use under the Monitored Emergency Use of Unregistered and Investigational Interventions (MEURI) framework.

Methods

In this descriptive case series at Hospital Zonal de Bariloche Dr Ramón Carrillo, San Carlos de Bariloche, Argentina, patients with laboratory-confirmed severe hantavirus pulmonary syndrome and requiring intensive care unit (ICU) admission or assessment were eligible to receive tocilizumab in addition to standard supportive care, in accordance with the MEURI framework. Tocilizumab was administered to patients within 24 h of ICU admission or ICU-level evaluation as a single intravenous dose of 8 mg/kg, up to a maximum of 800 mg. During this time, five eligible patients could not receive tocilizumab because timely administration was not feasible due to drug unavailability or refractory shock at diagnosis. This case series represents the first report from the larger, ongoing, pre–post study (ISRCTN72088243). The main descriptive outcome was survival to ICU discharge in patients who received tocilizumab and patients who were eligible to receive tocilizumab but did not.

Findings

Between June 1, 2024, and May 5, 2026, 13 patients with laboratory-confirmed hantavirus pulmonary syndrome were evaluated for inclusion after institutional approval of the MEURI protocol. Ten met eligibility criteria for tocilizumab; five received tocilizumab and five did not. In the five eligible non-treated patients, two were diagnosed when they were already in refractory shock, precluding timely administration, and three did not receive tocilizumab because the drug was unavailable when treatment was being considered. Four of five tocilizumab-treated patients survived to ICU discharge. The fifth treated patient died after rapid progression to refractory shock. All five eligible non-treated patients died after ICU admission.

Interpretation

These observations suggest that IL-6 inhibition warrants further evaluation within the MEURI framework or analogous expanded-access frameworks, and, when feasible, collaborative randomised studies with standardised data collection.

Funding

None.

Translations

For the Spanish translations of the abstract see Supplementary Materials section.

Source: 


Link: https://www.thelancet.com/journals/laninf/article/PIIS1473-3099(26)00285-9/abstract

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Breeding #pig #transport drives the dispersal of #swine #influenza A virus across #Europe

 


Abstract

Pigs serve as reservoirs of former human influenza A virus (IAV) H1N1 and H3N2 lineages and act as mixing vessels for diverse strains, facilitating the emergence of novel IAVs. Understanding the spread and evolution of swine IAVs (swIAVs) is therefore crucial to assess the risk of strains with zoonotic potential emerging. This study uses a phylogeographic framework to investigate the predictors of swIAV dispersal across Europe. All publicly available swIAV genomic sequences were retrieved and subsampled for the ten largest European pig-producing countries. Discrete phylogeographic reconstructions were conducted for H1, H3, N1, N2 encoding genes and all internal gene segments. Our analyses indicate that viral dispersal predominantly occurred from north-western to southern and eastern Europe, with frequent long-distance transitions between non-adjacent countries. We also extended the discrete phylogeographical analyses with generalized linear models to test the association between viral movement and potential predictors, such as live pig trade, pork trade, pig densities, farm sizes, or the geographic distance between key pig production zones. We find that breeding pig trade is the only consistently well-supported predictor of between-country transition events, whereas pork trade and geographic distance were not supported. This highlights that farms importing breeding pigs from multiple countries could act as hotspots for reassortment of diverse swIAV strains. Strengthening external biosecurity on farms with emphasis on quarantining breeding pigs, limiting long-distance transport, and implementing a One Health surveillance system for earlier detection of emerging strains, could help curb the rapid spread and evolution of swIAV in Europe.


Competing Interest Statement

The authors have declared no competing interest.

Source: 


Link: https://www.biorxiv.org/content/10.64898/2026.06.01.729471v1

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Wednesday, June 3, 2026

CEIRR #Risk #Assessment Pipeline executive reports on #H5N1 highly pathogenic avian influenza 2.3.4.4b, swine H1 1B.2, and #H9N2 low pathogenicity avian influenza B4.7.2

 


ABSTRACT

The Centers of Excellence for Influenza Research and Response (CEIRR) Risk Assessment Pipeline (RAP) integrates surveillance, phenotypic analysis, and computational modeling across six CEIRR centers to evaluate the pandemic potential of influenza A viruses. By generating coordinated data sets from wild and domestic animals and linking them to viral evolution and functional traits, CEIRR RAP supports the Centers for Disease Control and Prevention’s and the World Health Organization’s risk-assessment efforts. The RAP’s data packages thereby enable evidence-based prioritization of global influenza preparedness and response strategies.

Source: 


Link: https://journals.asm.org/doi/10.1128/jvi.00545-26

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Identification and characterization of a #SARS-CoV-2 #Mpro G23 deletion #ensitrelvir - #resistant mutant

 


ABSTRACT

Ensitrelvir is an antiviral drug that specifically targets the conserved main protease (Mpro) of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). However, mutations in Mpro could confer resistance to antivirals, including ensitrelvir. Thus, identifying SARS-CoV-2 drug-resistant mutants and elucidating their mechanisms of resistance are critical for guiding the selection of effective antiviral therapies. Here, we utilized a recombinant luminescent attenuated SARS-CoV-2 lacking the open reading frames (ORF) 3a and 7b proteins (Δ3a7b-Nluc WT) to safely identify ensitrelvir drug-resistant mutants (DRM-E) without the need of using virulent forms of SARS-CoV-2. We isolated a DRM-E containing a Mpro G23 deletion (G23del) with high resistance (~1,000-fold) to ensitrelvir, but not to the Mpro inhibitor nirmatrelvir or to the RNA-dependent RNA polymerase (RdRp) inhibitor remdesivir. The contribution of G23del in ensitrelvir resistance was confirmed by generating a Δ3a7b-Nluc containing G23del in Mpro (Δ3a7b-Nluc G23del). Δ3a7b-Nluc G23del exhibited resistance to ensitrelvir in both cultured cells and in K18 hACE2 transgenic mice. Binding affinity revealed that the G23del mutation altered ensitrelvir, but not nirmatrelvir, binding to Mpro. Notably, while Δ3a7b-Nluc G23del was affected in viral fitness, serial passage of Δ3a7b-Nluc G23del in the absence of ensitrelvir resulted in the emergence of substitution L50F in Mpro that restored viral fitness loss caused by G23del without altering resistance to ensitrelvir. Our results demonstrate that G23del in Mpro can confer resistance to ensitrelvir. Positively, G23del in Mpro does not render SARS-CoV-2 resistant to nirmatrelvir or remdesivir, suggesting the feasibility of treating SARS-CoV-2 infections containing G23del Mpro with other approved antivirals.

Source: 

Link: https://journals.asm.org/doi/10.1128/mbio.00584-26

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#Human #MERS-CoV #research in the #Gulf Cooperation Council Countries: A mapping scoping review of #epidemiology, #clade, and research priority gaps

 


Abstract

Middle East Respiratory Syndrome Coronavirus (MERS-CoV) continues to pose a substantial public health challenge within Gulf Cooperation Council (GCC) countries. This scoping review systematically examines geographic distribution, methodological characteristics, and thematic priorities of published research, while identifying critical evidence gaps. A total of 171 peer-reviewed studies on human MERS-CoV were included, with a marked predominance from Saudi Arabia (88.3%). Research output peaked in 2016 and 2019, followed by a decline coinciding with the COVID-19 pandemic. Cross-sectional designs were most common (43.3%), with widespread reliance on non-probability sampling (95.3%). Epidemiology and surveillance constituted the primary research focus (∼24%), with case fatality rate being the most frequently reported metric (43.9%). Limited genomic investigations were identified, with Clade B representing 71.4% of characterized strains. Overall, the evidence base reflects geographic concentration, methodological heterogeneity, and thematic limitations, underscoring the need for expanded research scope and enhanced regional collaboration.

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