Monday, April 14, 2025

#Surveillance for #human #infections with avian #influenza A(#H5) viruses: objectives, case #definitions, #testing and reporting (#WHO)



Key points 

• The overall objective of continual global surveillance for human infection with avian influenza A(H5) viruses is to detect and characterize any influenza A(H5) viruses infecting humans in order to: 

- (1) promptly trigger public health control and response actions, 

- (2) assess the trends of such infections and the public health risks posed (including the risk of a pandemic); and 

- (3) inform global pandemic preparedness activities. 

• Specific surveillance objectives include rapidly detecting human cases of influenza A(H5) virus infection, monitoring the incidence of new cases over time and geographical distribution, assessing and monitoring changes in transmission patterns to promptly detect any unusual events that may signal human-to-human transmission of the virus, characterizing and monitoring changes in any influenza A(H5) viruses infecting humans relative to those circulating in animals to inform control strategies, describing the clinical presentation of illness and identifying risk factors for infection and severe outcomes. 

• Close collaboration with the animal health and environment sectors is essential to understand the extent of the risk of human exposures, to target enhanced surveillance and case finding activities, and to prevent and control the spread of influenza A viruses in animals. 

• Under the International Health Regulations (IHR) (2005) (1), States Parties are required to notify WHO within 24 hours of any laboratory-confirmed case of human influenza caused by a new subtype according to the WHO case definition (2). Human infection caused by a new subtype has been established as being unusual or unexpected and may have serious public health impact. For this reason, even a single case of human infection with a new influenza subtype that fulfils the WHO case definition must always be notified immediately to WHO, regardless of the context in which it occurs. For events involving suspected cases of human influenza caused by a new subtype (e.g., in the absence of laboratory confirmation), States Parties are required to carry out an assessment of such events according to the decision instrument contained in Annex 2 of the IHR (2005), and then to notify WHO of all qualifying events within 24 hours of such an assessment. Notifications and other event-related communications under the IHR are carried out, by the most efficient means of communication available, between the National IHR Focal Point on behalf of the State Party concerned and the WHO IHR Contact Point at the respective WHO Regional Office.  


Background and rationale 

The avian influenza A(H5N1) epizootic has led to unprecedented numbers of  deaths in wild birds; outbreaks and culling in domestic poultry; and A(H5N1)  infections in mammals, including humans. Such human infections remain rare and  thus far have been associated with exposure to infected animals or to  contaminated environments, without subsequent sustained human-to-human  transmission. However, A(H5N1) viruses pose a significant public health risk, with  human infections often causing severe disease and high mortality. In addition,  such viruses have the potential to adapt to humans and with pandemic potential.  

Other influenza A(H5) virus subtypes, such as A(H5N2), A(H5N6) and (H5N8),  have also been detected in birds and mammals, including in humans. The current  influenza A(H5) situation warrants intense global monitoring and a coordinated  global response (3). 

Due to the potential significant risk to human health, and the far-reaching  implications of the disease for the health of wild birds and other animal  populations, a “One Health” approach is essential in effectively tackling avian  influenza. Close collaboration with the animal health and environment sectors is  vital for understanding the extent of the risk of human exposures, and for  preventing and controlling the spread of A(H5) and other influenza A viruses in  animals. In addition to surveillance approaches at the human-animal-environment  interface, it is recommended that countries, through their National  Influenza Centres (NICs) and other influenza laboratories within the WHO Global  Influenza Surveillance and Response System (GISRS), remain alert to the  possibility of human influenza A virus infections of zoonotic origin. 

Following prompt testing, early and appropriate clinical management should be  initiated, and precautionary measures put in place to assess and prevent potential  further spread among humans and animals. Epidemiological and  virological surveillance, and the follow-up of suspected and confirmed human  cases, should be conducted systematically. (4, 5) The WHO implementation  guidance on surveillance for human infection with influenza A(H5) viruses is  summarized below and will be updated as the situation evolves or as more  information becomes available. 


Surveillance objectives 

Overall objective of continual global surveillance To promptly trigger public health  control and response actions; to detect and characterize any influenza A(H5)  viruses infecting humans to assess the public health risks posed (including the risk  of a pandemic), and to inform global pandemic influenza preparedness. 

Within these overall objectives, the specific objectives of such surveillance are to:  

1. rapidly detect any human cases of A(H5) virus infection; o assess and monitor  changes in virus transmission patterns and promptly detect any unusual events  that may signal human-to-human transmission of the virus; o monitor the  incidence of new cases over time and geographical distribution;  

2. characterize and monitor changes in any A(H5) viruses infecting humans  relative to those in animals to inform control strategies; and 

3. describe the clinical presentation of illness and identify risk factors for infection  and severe outcomes. 


Surveillance and investigation of human infections with A(H5) viruses 

For all countries 

• A collaborative, One Health approach to surveillance is needed to identify when  humans could be at risk of zoonotic influenza A virus infections, detect human  cases when they occur and monitor for human-to-human virus transmission. 

• Use information gathered from animal health surveillance on the circulation of  influenza A viruses in animals to inform the risk assessment and targeted  surveillance of human populations and guide appropriate measures. If timely and  of good quality, such information can inform the investigation of respiratory  events reported from health care or community settings and unexpected or  unexplained changes in trends observed in public health surveillance systems for  acute respiratory illnesses. 

• Vigilance for the emergence of novel influenza viruses of pandemic potential  should be maintained at all times. In the context of the co-circulation of SARS- CoV-2 and influenza viruses, WHO has published practical guidance for integrated  surveillance (6). 

• To detect human cases, event-based and indicator-based surveillance are  important. Approaches to surveillance should include respiratory event-based  surveillance at health facilities, community event-based surveillance where  appropriate, establishment of nationally notifiable diseases and conditions  reporting, the use of laboratory networks. These approaches can be  complemented with the monitoring of acute respiratory disease trends and  influenza detections in indicator-based surveillance, public media campaigns,  social media monitoring and targeted surveillance among at-risk populations. 

o It is essential to have a monitoring system for possible human-to-human virus  transmission in place to enable a rapid transition to more intensive case detection  and to provide a platform for further investigations (7). 

• Raise awareness and be prepared for the possibility of human infections with  any novel influenza virus of zoonotic origin, including influenza A(H5) viruses. 

• In hospital settings, clinicians should be alerted and consider testing patients  with severe unexplained acute respiratory illness for influenza, especially if: 

(1) the patient had, in the 14 days prior to illness onset, lived in or travelled to an  area in which influenza A(H5) infections had recently been detected in humans  and/or animals; 

(2) the patient had been exposed to live or dead wild or domestic animals, or to  environments such as exhibitions, markets or farms where live animals are kept  or sold; or 

(3) the patient had been exposed to other individuals with recent acute  respiratory illness who had such histories or exposures as outlined in (1) or (2). 

o Test any health care worker who develops an acute respiratory illness or  conjunctivitis and has been caring for patients with severe unexplained acute  respiratory illness. 

o In settings where there may be limited access to health care, or areas known to  be at risk of influenza infections and outbreaks in animals, community  representatives should be trained to report clusters1 of respiratory illness, illness  in people exposed to infected or potentially infected animals or outbreaks in  animals, through a standard reporting channel. 

o Increase awareness among laboratories of the importance of molecular  detection of influenza A(H5) viruses in human clinical specimens (respiratory and  conjunctival) and of collaboration with an affiliated NIC and provide guidance on  immediate shipping of positive but un-subtypeable influenza A or A(H5)-positive  specimens to a WHO Collaborating Centre on influenza for detailed virus characterization. 

o Maintain trained rapid response teams and establish protocols in advance for  outbreak investigation, and active and passive case finding, including through  contact tracing, for all clusters of unexplained acute respiratory illness (8, 9). 

For  countries with A(H5) viruses suspected or detected in in birds or mammals, in addition to all of the above 

• Countries should have in place an approach for assessing and monitoring the  health of individuals at risk of potential exposure to influenza A(H5) viruses. This  may include individuals who work in the poultry or other livestock industry or fur  farms or zoos (including farmers and veterinarians), visit animal farms or  premises in the course of their work (such as animal and public health  responders), transport or sell live poultry or other animals or carcasses, slaughter  or are involved in culling/depopulating/disposing of poultry or other animals or in  the decontamination of contaminated premises. Additionally, individuals may have  nonoccupational potential exposure to A(H5) viruses in the course of  interacting with infected or potentially infected animals. 

• Raise awareness among clinicians and other health care workers of the  possibility of human infection with avian influenza A(H5) viruses to facilitate early  clinical suspicion and diagnosis, isolation of patients with suspected A(H5) virus  infection, correct use of recommended personal protective equipment and prompt  initiation of antiviral treatment. 

• In outpatient settings, clinicians should consider  testing for influenza in patients  with acute respiratory infection or influenza-like illness or conjunctivitis if  the patient has been exposed to influenza-infected (or presumed to be infected)  birds or other animals in the 14 days prior to illness onset, as described below. 

• Countries should define, based on their available capacity and infrastructure,  which syndromes that clinicians should test, or refer for testing, to ensure that the  health system can effectively manage the testing process without  overburdening facilities or resources. 


Case definitions 

The case definitions provided below are used for surveillance purposes and to  standardize case classification and are not intended to provide complete  descriptions of disease in patients or to guide clinical management. They are also  not intended to be used for additional, more sensitive case finding during outbreak  investigations, which may include investigating any at risk individual  with signs or symptoms of acute respiratory illness. National authorities may  develop other case definitions for other objectives and testing strategies. The case  definitions may change as new information about the disease, epidemiology,  or the viruses become available. WHO clinical practice guidelines  for influenza have been published separately (10). Clinical decisions concerning  the treatment, care or triaging of people potentially infected with an influenza  A(H5) virus should be based on clinical judgement and epidemiological reasoning. 

While most patients infected with influenza A(H5) viruses present with fever,  cough and lower respiratory tract symptoms, the clinical spectrum is broad and  can include mild symptoms (such as upper respiratory tract symptoms or  conjunctivitis only) without fever.  


Suspected influenza A(H5) case definition 

A person presenting with unexplained acute respiratory illness with fever (> 38  °C) or cough, shortness of breath or difficulty breathing or conjunctivitis. 

AND 

One or more of the following exposures in the 14 days prior to symptom onset: 

• Close contact (within 1 metre) with a person (for example, caring for, speaking  with or touching) who is a suspected or confirmed avian influenza A(H5) case. 

• Exposures in an area where avian influenza A(H5) virus infections in animals or  humans have been suspected or confirmed, such as: 

o close contact (within 1 metre) with live, sick or dead infected animals or animal  products, or consumption or handling of raw uncooked meat, unpasteurized milk  or other raw animal meat or products;  

o direct exposure to surfaces that could be contaminated with infected animal  products or with water contaminated with such products (such as wastewater from  a live bird market or slaughtering facility); or 

o visiting or working at a live animal market, farm, zoo or other setting with  infected animals. 

• Handling samples (animal or human) suspected of containing avian influenza  A(H5) virus in a laboratory or other setting. 


Confirmed case definition 

1. A person with a laboratory-confirmed infection with an avian influenza A(H5)  virus. A laboratory-confirmed infection is considered if it has been confirmed by  positive results from polymerase chain reaction (PCR), virus isolation, or  serological testing of paired acute and convalescent serum.   

Serologic testing of paired acute and convalescent serum specimens: 

• Serological confirmation of an A(H5) case requires paired sera collection (one  acute, one convalescent specimen), with a ≥ 4-fold rise in neutralizing antibody  titres (or equivalent) to an influenza A(H5) virus2 that is antigenically similar to  the virus the person was exposed to, with a convalescent neutralizing titre ≥ 1:40.  Acute serum should be collected within 7 days of symptom onset;  convalescent serum should be collected ≥ 21 days (ideally 21–28 days) after  symptom onset. 

Serologic testing of a single convalescent serum specimen, when the following are met:   

• The criteria for seropositivity of an A(H5) infection using a single convalescent  serum specimen, collected at ≥ 21 days after symptom onset or exposure includes  a neutralizing antibody titre ≥ 1:40 to an influenza A(H5) virus; and 

• A positive result using a different serological assay such as a hemagglutination  inhibition (HI) antibody titre ≥ 1:40, or an influenza A(H5)-specific positive result  from another immunological assay such as an enzyme-linked immunosorbent  assay (ELISA), a multiplex binding antibody assay, or similar binding antibody  assay; and 

• In all assays mentioned above, sera are tested against an influenza A(H5)  virus(es)4 or antigen(s) antigenically similar to the virus the person was exposed to; and  

• The person has an epidemiological link3 to a laboratory-confirmed human case.   

Testing 

All individuals meeting the suspected surveillance case definition or other locally  adapted case definitions for other objectives should be tested according to local  protocols.  

• The types of samples to be collected for the diagnosis of viral infections of the  upper and lower respiratory tract are described in the WHO Manual for the  laboratory diagnosis and virological surveillance of influenza (11). In cases  presenting with conjunctivitis, conjunctival specimens should be collected. 

o WHO information for the molecular detection of influenza viruses can be found  on the WHO website (12). 

o All influenza A positive specimens that are not able to be subtyped should be  sent immediately to a National Influenza Centre (NIC) if originally tested  elsewhere, and from the NIC to a  WHO Collaborating Centre of GISRS (13) for further analysis in line with the relevant WHO operational guidance (14) under their Terms of Reference (15). 

o Virus isolation from specimens suspected or confirmed to contain avian influenza  A(H5) virus is not recommended, unless it is performed at a WHO  influenza CC or a WHO H5 Reference Laboratory of GISRS, due to the biosafety  requirements. 

o Serologic testing is strongly recommended to be performed or directly supported  by, or performed in collaboration with, a WHO CC or H5 Reference  Laboratory of GISRS. 

o Contact WHO Global Influenza Programme (GISRS-WHOhq@WHO.int) for  support of serology testing for A(H5) and other help to confirm a human infection  with an avian influenza A(H5) virus.  

• Testing of asymptomatic exposed individuals could also be considered on a case- by-case basis, depending on available resources and based on an exposure risk  assessment and testing objectives (for example, as part of an outbreak  investigation or special study to assess asymptomatic transmission). In this  context, the testing of respiratory samples for viable and replicating viruses needs  to be paired with serological testing of acute and convalescent serum  samples. 


Investigation of confirmed cases and monitoring of exposed individuals 

• All confirmed human cases of influenza A(H5) infection should be further  investigated and closely monitored, and contacts also monitored to detect and  rapidly interrupt potential humanto-human virus transmission and to better  understand exposure risks. More detailed guidance can be found in the WHO  Protocol to investigate non-seasonal influenza and other emerging acute  respiratory diseases (9). In addition, various protocols under WHO influenza  investigations and studies (Unity Studies) are currently being updated. When  sharing influenza A(H5)-positive specimens, the relevant WHO operational  guidance should be followed (14). 

• Case definitions for additional case finding should be developed locally and may  be shaped by information obtained from the interview with the confirmed case(s).  

• The specific public health actions that should be implemented immediately  include: 

o testing for cases of human infection with animal influenza A viruses using  appropriate investigation and laboratory protocols; 

o assessing exposure to  animals and travel history of confirmed cases; 

o identification and monitoring of household and other close contacts of a  confirmed case (including health care personnel) and active searching for other  cases; and 

o early detection of any unusual respiratory disease events that could signal  person-to-person transmission of the virus. 

• Public health and animal health authorities should conduct joint investigations of  human cases of novel influenza A virus infection (zoonotic influenza). This will  involve assessing the role of local animals as sources of exposure, understanding  patterns of illnesses or death in local animals and determining whether animal  influenza viruses are circulating in local animals so that appropriate control  measures can be implemented to reduce the risk of continued human exposure.  


Reporting under IHR and information sharing 

Under the International Health Regulations (IHR) (2005), States Parties are  required to notify WHO within 24 hours of any laboratory-confirmed case of  human influenza caused by a new subtype according to the WHO criteria for IHR  notification (2). Human influenza caused by a new subtype has been established  as being unusual or unexpected and may have serious public health impact. For  this reason, even a single case of human infection with a new influenza subtype  that fulfils the WHO case definition must always be notified immediately to WHO,  regardless of the context in which it occurs. For events involving suspected cases  of human influenza caused by a new subtype (e.g., in the absence of laboratory  confirmation), States Parties are required to carry out an assessment of such  events according to the decision instrument contained in Annex 2 of the IHR  (2005), and then to notify WHO of all qualifying events within 24 hours of such an  assessment. Notifications and other event-related communications under the  IHR are carried out, by the most efficient means of communication available, between the National IHR Focal Point on behalf of the State Party  concerned and the WHO IHR Contact Point at the respective WHO Regional Office. 

A minimum data set reporting form for human infection with an influenza virus  with pandemic potential is available in the Annex of this document. As specified in  Article 6.2 of the IHR (2005), the notification must always include or be followed  by timely and ongoing communication of accurate and sufficiently detailed public  health information about the event as well as the health measures implemented in  response to the event. As the event unfolds, more information may become  available, and the State Party must continue to share the relevant public health  information to allow WHO to conduct its risk assessment with respect to the  ongoing event in collaboration with the notifying State Party. 

WHO has published the WHO case definition for human infections with avian  influenza A(H5) virus requiring notification under IHR (2005) (16). The results of  ongoing surveillance activities, and of studies or other research activities, should  also be communicated to WHO in a timely manner to inform global risk  assessment and guidance. 

Information on human infections and information not under the IHR reporting  requirements (for example, findings from seroprevalence studies) that might be of  public health importance, should be rapidly shared with GISRS for risk  assessment purposes, via WHO CCs, WHO regional officers or the Global influenza  Programme. For example, if a single serum specimen tests positive in a  serology assay but does not meet the notification requirements under IHR as  mentioned above, it is strongly recommended to communicate this information to  a WHO CC of GISRS for surveillance and risk assessment purposes. This includes  situations where a single convalescent serum specimen tests positive by  microneutralization assay and another assay, such as ELISA, but the individual  from whom the specimen was taken did not have an epidemiological link to a  confirmed A(H5) human case, even though they may have had exposure to  A(H5)-infected animals or contaminated environments.  


Wastewater surveillance 

Although Influenza A viruses can be detected in wastewater (and can be  distinguished from influenza B viruses), most of the laboratory assays used cannot  distinguish between different influenza A virus subtypes. It is also  currently not possible to determine the source of an influenza A virus in  wastewater (human waste, animal waste or other) or to know how many cases  must occur in an area before influenza viruses can be detected through  wastewater surveillance. If used, wastewater and environmental surveillance  should be integrated as part of multimodal influenza surveillance (17).  


Methods 

This guidance is based on guidance previously developed by WHO for other  zoonotic influenza subtypes and considers the information reported on human  infections with influenza A(H5) viruses to WHO and GISRS. The guidance also  incorporates information from other WHO products that have become available  since previous versions of surveillance guidance for other zoonotic influenza subtypes were published.  


Contributors 

This surveillance guidance was developed by the World Health Organization  (WHO) Global Influenza Programme through a process of review and consultation  with internal and external experts. WHO expresses its gratitude to those who  reviewed the document for their efforts, experience and insights.  This  surveillance guidance was adapted from previous guidance by Aspen Hammond of  the WHO Global Influenza Programme. 

WHO staff and consultants who contributed to the development of this guidance in  2024 include: Vanessa Cozza (WHO headquarters, Global Influenza Programme), Helge Hollmeyer (WHO headquarters, IHR Secretariat), Joshua Mott (WHO headquarters, Epidemic & Pandemic Preparedness and Prevention), Sergejs Nikisins (WHO headquarters, Global Influenza Programme), Sarika Patel (WHO Country office Cambodia), Dmitriy Pereyaslov (WHO headquarters, Global Influenza Programme), Angel Rodriguez (WHO Regional Office for the Americas), Melissa Rolfes (WHO headquarters, Global Influenza Programme), Magdi Samaan (WHO headquarters, Global Influenza Programme), Maria Van Kerkhove, Marc-Alain Widdowson (WHO Regional Office for Europe), Reina Yamaji (WHO headquarters, Global Influenza Programme) and Wenqing Zhang (WHO headquarters, Global Influenza Programme). Technical experts from the following WHO Collaborating Centres of the Global Influenza Surveillance and Response System (GISRS) (13, 18) contributed to this document through their review of the draft document in 2024: WHO Collaborating Centre for Reference and Research on Influenza Victorian Infectious Diseases Reference Laboratory, The Peter Doherty Institute for Infection & Immunity, Australia; WHO Collaborating Centre for Reference and Research on Influenza, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (CDCD), China; WHO Collaborating Centre for Reference and Research on Influenza, National Institute of Infectious Diseases (NIID), Japan; WHO Collaborating Centre for Reference and Research on Influenza, The Francis Crick Institute, United Kingdom of Great Britain and Northern Ireland; WHO Collaborating Centre for the Surveillance, Epidemiology and Control of Influenza, Centers for Disease Control and Prevention, USA; WHO Collaborating Center for Studies on the Ecology of Influenza in Animals, St. Jude Children's Research Hospital, USA; and the WHO Collaborating Centre for Studies on Influenza at the Animalhuman Interface, State Research Center of Virology and Biotechnology "VECTOR", Rospotrebnadzor, Russian Federation.  Declaration of interests Technical experts represented institutions designated as WHO Collaborating Centres of the Global Influenza Surveillance and Response System (GISRS) and no declarations of interest were required from them for their review of the draft document. 

___

{1} A “cluster” is defined as two or more persons  with onset of symptoms within the same 14-day period and who are associated  with a specific setting, such as a classroom, workplace, household, extended  family, hospital, other residential institution, military barracks or recreational  camp. 

{2} Wild type virus is preferred.  

{3} This may include close contact such as providing care for the patient, including as a health care worker or family member, or other similarly close physical contact, or staying at the same place (e.g. lived with, visited) as a confirmed case while the case was symptomatic.  


References 

1. International Health Regulations (2005). Third edition. Geneva: World Health Organization; 2016 (https://iris.who.int/handle/10665/246107, accessed 27 August 2024). 

2. Case definitions for the four diseases requiring notification to WHO in all circumstances under the IHR (2005). Geneva: World Health Organization; 2009 (https://www.who.int/publications/m/item/case-definitions-for-the-four-diseases-requiringnotification-to-who-in-all-circumstances-under-the-ihr-(2005), accessed 27 August 2024). 

3. Updated joint FAO/WHO/WOAH public health assessment of recent influenza  A(H5) virus events in animals and people. 20 December 2024  (https://www.who.int/publications/m/item/updatedjoint-fao-who-woah-assessment-of-recent-influenza-a(h5n1)-virus-events-in-animals-andpeople_dec2024, accessed 23 January 2025). 

4. Public health resource pack for countries experiencing outbreaks of influenza in animals: revised guidance. Geneva: World Health Organization; 2023 (https://iris.who.int/handle/10665/372248, accessed 27 August 2024). 

5. Practical interim guidance to reduce the risk of infection in people exposed to avian influenza viruses, 5 June 2024.Geneva: World Health Organization; 2024 (https://doi.org/10.2471/B09116, accessed 27 August 2024). 

6. Implementing the integrated sentinel surveillance of influenza and other respiratory viruses of epidemic and pandemic potential by the Global Influenza Surveillance and Response System: standards and operational guidance. Geneva: World Health Organization; 2024 (https://iris.who.int/handle/10665/379678, accessed 23 January 2025). 

7. “Crafting the mosaic”: a framework for resilient surveillance for respiratory viruses of epidemic and pandemic potential. Geneva: World Health Organization; 2023 (https://iris.who.int/handle/10665/366689, accessed 27 August 2024). 

8. Influenza Investigations & Studies (Unity Studies) [website]. Geneva: World Health Organization (https://www.who.int/teams/global-influenza-programme/surveillance-andmonitoring/influenza-investigations-studies-unity, accessed 27 August 2024). 

9. Protocol to investigate non-seasonal influenza and other emerging acute respiratory diseases. Geneva: World Health Organization; 2018 (https://iris.who.int/handle/10665/275657, accessed 27 August 2024). 

10. Clinical practice guidelines for influenza. Geneva: World Health Organization; 2024 (https://iris.who.int/bitstream/handle/10665/378872/9789240097759-eng.pdf?sequence=1, accessed 1 Oct 2024). 

11. Manual for the laboratory diagnosis and virological surveillance of influenza. Geneva: World Health Organization; 2011  (https://iris.who.int/handle/10665/44518, accessed 27 August 2024). 

12. WHO information for the molecular detection of influenza viruses. Geneva: World Health Organization; 2021 (https://www.who.int/teams/global-influenza-programme/laboratorynetwork/quality-assurance/eqa-project/information-for-molecular-diagnosis-of-influenza-virus, accessed 27 August 2024). 

13. WHO Collaborating Centres within the Global Influenza Surveillance and Response System (GISRS) [website]. Geneva: World Health Organization (https://www.who.int/initiatives/globalinfluenza-surveillance-and-response-system/who-collaboration-centererl?CxitPEOtTWx0xUd5TJdODSXcnyJqzYd7FZeivpn7xcI=, accessed 27 August 2024). 

14. Operational guidance on sharing influenza viruses with human pandemic potential (IVPP) under the Pandemic Influenza Preparedness (PIP) Framework. Geneva: World Health Organization; 2017 (https://iris.who.int/handle/10665/259402, accessed 27 August 2024). 

15. Terms of Reference for National Influenza Centres of the Global Influenza Surveillance and Response System. Geneva: World Health Organization; 2017 (https://cdn.who.int/media/docs/default-source/influenza/national-influenza-centersfiles/nic_tor_en.pdf?sfvrsn=93513e78_30, accessed 27 August 2024). 

16. WHO case definition for human infections with avian influenza A(H5) virus requiring notification under IHR (2005) [website]. Geneva: World Health Organization (https://www.who.int/teams/global-influenza-programme/avian-influenza/case-definitions, accessed 7 November 2024). 

17. Wastewater and Environmental Surveillance Summary for Influenza, Pilot version, 6 December 2024. Geneva: World Health Organization (https://cdn.who.int/media/docs/defaultsource/wash-documents/wash-related-diseases/wes-summary-for-influenza---pilot-version6dec2024.pdf?sfvrsn=cb7b4f94_3, accessed 29 Jan 2024). 

18. WHO Collaborating Centres Global database [website]. Geneva: World Health Organization (https://apps.who.int/whocc/, accessed 7 November 2024. 


Further reading 

• Current information on animal influenza events reported to the World Organisation for Animal Health (WOAH) can be found at: WAHIS: World Animal Health Information System [website]. World Organisation for Animal Health (https://wahis.woah.org/#/home). 

• The results of human A(H5) surveillance and public health risk assessments and related resources can be found at: Human-animal interface [website]. Geneva: World Health Organization (https://www.who.int/teams/global-influenza-programme/avian-influenza). 

(...)

Source: World Health Organization, https://www.who.int/publications/i/item/surveillance-for-human-infections-with-avian-influenza-a(-h5)--viruses

____

Sunday, April 13, 2025

Penitent St. Mary Magdalene, Titian (1560 - c.1565)

 


Public Domain.

Source: WikiArt, https://www.wikiart.org/en/titian/penitent-st-mary-magdalene

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Saturday, April 12, 2025

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A Novel #Nobecovirus in an Epomophorus wahlbergi #Bat from #Nairobi, #Kenya

Abstract

Most human emerging infectious diseases are zoonotic, originating in animal hosts prior to spillover to humans. Prioritizing the surveillance of wildlife that overlaps with humans and human activities can increase the likelihood of detecting viruses with a high potential for human infection. Here, we obtained fecal swabs from two fruit bat species—Eidolon helvum (n = 6) and Epomophorus wahlbergi (n = 43) (family Pteropodidae)—in peridomestic habitats in Nairobi, Kenya, and used metagenome sequencing to detect microorganisms. A near-complete genome of a novel virus assigned taxonomically to the Coronaviridae family Betacoronavirus genus and Nobecovirus subclade was characterized from E. wahlbergi. Phylogenetic analysis indicates this unique Nobecovirus clade shares a common ancestor with Eidolon/Rousettus Nobecovirus subclades isolated from Madagascar, Kenya, and Cameroon. Recombination was detected across open reading frames, except the spike protein, in all BOOTSCAN analyses, indicating intra-host coinfection and genetic exchange between genome regions. Although Nobecoviruses are currently bat-specific and are not known to be zoonotic, the propensity of coronaviruses to undergo frequent recombination events and the location of the virus alongside high human and livestock densities in one of East Africa’s most rapidly developing cities justifies continued surveillance of animal viruses in high-risk urban landscapes.

Source: Viruses, https://www.mdpi.com/1999-4915/17/4/557

____

Friday, April 11, 2025

#Cardiovascular post-acute #sequelae of #SARS-CoV-2 in #children and #adolescents: cohort study using electronic health records

Abstract

The risk of cardiovascular outcomes following SARS-CoV-2 infection has been reported in adults, but evidence in children and adolescents is limited. This paper assessed the risk of a multitude of cardiac signs, symptoms, and conditions 28-179 days after infection, with outcomes stratified by the presence of congenital heart defects (CHDs), using electronic health records (EHR) data from 19 children’s hospitals and health institutions from the United States within the RECOVER consortium between March 2020 and September 2023. The cohort included 297,920 SARS-CoV-2-positive individuals and 915,402 SARS-CoV-2-negative controls. Every individual had at least a six-month follow-up after cohort entry. Here we show that children and adolescents with prior SARS-CoV-2 infection are at a statistically significant increased risk of various cardiovascular outcomes, including hypertension, ventricular arrhythmias, myocarditis, heart failure, cardiomyopathy, cardiac arrest, thromboembolism, chest pain, and palpitations, compared to uninfected controls. These findings were consistent among patients with and without CHDs. Awareness of the heightened risk of cardiovascular disorders after SARS-CoV-2 infection can lead to timely referrals, diagnostic evaluations, and management to mitigate long-term cardiovascular complications in children and adolescents.

Source: Nature Communications, https://www.nature.com/articles/s41467-025-56284-0

____

Invasive #meningococcal #disease - Kingdom of #Saudi Arabia (WHO D.O.N.)

{Excerpts}

Situation at a glance

On 13 March 2025, the International Health Regulations (IHR) National Focal Point (NFP) for the Kingdom of Saudi Arabia (KSA) reported 11 cases of invasive meningococcal disease (IMD) to WHO. Additionally, between 11 February and 18 March 2025, the WHO Eastern Mediterranean Regional IHR contact point received reports of six isolated cases of IMD, either through notification or bilateral communication with IHR NFPs. These cases involve individuals who had recently returned from Umrah. Meningococcal disease remains a global public health concern, particularly in the context of mass gathering events such as Hajj and Umrah. The government of Saudi Arabia regularly issues health requirements for Hajj and Umrah, including vaccination policies. As of 10 March 2025, KSA health authorities estimated that only 54% of international Umrah pilgrims had complied with the meningococcal vaccination requirements. The significant number of pilgrims traveling to KSA from countries with varying levels of meningococcal disease incidence presents a risk of international spread during these gatherings. Given the recent notification of these cases linked to Umrah, WHO strongly advises all individuals planning to attend mass gatherings such as Hajj and Umrah to receive vaccination against meningococcal disease at least 10 days prior to travel.


Description of the situation

On 13 March 2025, the NFP for KSA reported to WHO 11 confirmed cases of IMD. All cases were associated with individuals who had performed Umrah in KSA between 7 January and 12 March 2025.

Among the 11 confirmed cases, four were reported from three countries in the WHO Eastern Mediterranean Region, while the remaining cases are individuals with travel history from countries in the WHO South-East Asia Region. The median age of cases was 36 years (range 6 – 69 years) and 64% were male. The cases were diagnosed between 7 January and 2 March 2025, and none of the affected individuals had a history of vaccination against meningococcal disease. All cases received treatment in hospitals in KSA, fully recovered and were discharged. Serogrouping tests identified the causative strain as Neisseria meningitidis (N. meningitidis) serogroup W135.

In addition, between 11 February and 18 March 2025, the WHO Eastern Mediterranean Regional IHR contact point received reports—either through notifications or bilateral communication with IHR NFPs —of six isolated cases of IMD among individuals who had recently returned from Umrah. Of these, three cases were reported from the WHO Europe Region and three cases were from the WHO Eastern Mediterranean Region. The median age of cases was 19 years (range 6 – 30 years). Serogroup W135 was confirmed in two of the six cases. 


Epidemiology

Invasive meningococcal disease is a life-threatening bacterial infection caused by Neisseria meningitidis, associated with severe long-term complications and a high case fatality rate, despite prompt and appropriate treatment.

Meningococcal disease occurs worldwide, and can present as a sporadic, clustered or epidemic-prone infection with varying degrees of endemicity across regions. Outbreaks are more likely to occur in settings that facilitate transmission of infection, such as areas with low vaccination coverage, overcrowded living conditions, limited or disrupted access to healthcare services, and mass gatherings, including religious pilgrimages like Hajj and Umrah.  In the KSA, public health authorities conduct regular risk assessments and continue to identify meningococcal disease as a significant public health threat during mass gatherings. Thus, the requirement of quadrivalent meningococcal vaccination (MenACWY), which protects against serogroups A, C, W, and Y, prior to traveling to KSA for Hajj and Umrah has been maintained in the previous years.  However, vaccination compliance for Umrah was declined over the past two years.

The significant number of pilgrims arriving in KSA from countries with diverse meningococcal disease prevalence increases the risk of international spread. In 2024, 12 cases of meningococcal disease associated to Umrah and/or pilgrimage to KSA were reported from the United States of America, the United Kingdom, and France. Of these, nine patients were unvaccinated, and the vaccination status of remaining three was unknown. 

Antimicrobial susceptibility data was available for 11 of the 12 cases, and ciprofloxacin-resistant strains were identified in three cases. In 2025, to date, 17 cases associated with travel to KSA for religious pilgrimage have already been reported from multiple countries.


Public health response

-- Leadership and coordination:

- Disseminating guidelines: The government of Saudi Arabia regularly issues the health requirements for Hajj and Umrah, which are published on the Ministry of Health (MoH) website and disseminated to all countries through diplomatic channels. A key requirement is that all travelers must receive the MenACWY vaccine before departing from their home country for Umrah and Hajj.
Surveillance:

- Screening at Points of Entry: Health authorities at Saudi Arabia's points of entry conduct screenings during the Hajj and Umrah seasons by visually checking for signs and symptoms of invasive IMD among incoming travelers. They also review travelers' health documents to ensure compliance with the required health protocols.

- Conducting regular risk assessments: Public health authorities in Saudi Arabia regularly conduct risk assessments. The country has strengthened surveillance for IMD in the Umrah zone, and continuously monitors Neisseria meningitidis carriage in both Makkah and Madinah.

- Electronic surveillance system: Saudi Arabia has established a comprehensive electronic surveillance system to monitor and control IMD across all healthcare facilities. This system mandates the immediate reporting of all suspected and confirmed cases to public health authorities. Standardized case definitions are provided to ensure accurate and timely identification. Laboratory-based diagnostics, including culture, antimicrobial susceptibility testing, and PCR, are prioritized, along with the collection of detailed demographics, clinical, and epidemiological data to support response efforts. Active surveillance is particularly heightened during mass gatherings to quickly detect and respond to potential outbreaks.

-- Clinical operations:

- Case management: Healthcare facilities in Saudi Arabia are well-prepared to effectively manage cases of meningococcal disease and their close contacts. This is ensured through the provision of appropriate medical care, including timely diagnosis and prompt treatment, based on the appropriate use of antibiotics. Infection prevention and control practices are followed to minimize the risk of nosocomial (hospital-acquired) transmission.

- Post-exposure chemoprophylaxis: Chemoprophylaxis is an essential preventive measure against meningococcal disease. Antimicrobial prophylaxis is administered to close contacts of confirmed cases to prevent secondary transmission. The selection of the drug of choice should be guided by known antimicrobial resistance patterns.

- VaccinationTargeted vaccination with a conjugate vaccine is used to prevent disease in the community. Most adults in the Umrah region had received at least one dose of the conjugate vaccine, in addition to routine meningococcal immunization for children.

- Risk communication and community engagement:

- Awareness campaigns: Saudi Arabia places strong emphasis on public education and community engagement to promote early detection, timely treatment, and prevention of meningococcal disease. Awareness campaigns are regularly conducted to inform the public on the nature of the disease, its symptoms, and the importance of early medical intervention. These campaigns also highlights the critical role of vaccination, both as part of the national immunization programme and as a mandatory requirement for Hajj and Umrah pilgrims.


WHO risk assessment

Meningococcal disease remains a public health challenge, especially for mass gathering events like Hajj and Umrah.

Umrah is a year-round pilgrimage to Mecca in KSA. The risk of meningococcal disease at mass gatherings like Hajj and Umrah is increased due to the high population influx, the person-to-person transmission through respiratory droplets, and the presence of pilgrims from diverse geographical regions and prolonged close contact—resulting from shared accommodations and participation in rituals. In 2024, it was estimated that 24 million pilgrims performed Umrah, with 50% of those being international pilgrims. Mass gatherings such as those occurring during the Umrah pilgrimage can facilitate the transmission of infectious diseases, including IMD.

Since 2001, strict preventative measures, including mandatory quadrivalent (MenACWY) meningococcal vaccination has mitigated the risk of pilgrimage-associated meningococcal outbreaks. While MenACWY vaccination is highly effective in reducing the risk of outbreaks during Hajj and preventing transmission to the home countries of pilgrims, there are challenges in ensuring the vaccination of the pilgrims in their countries of origin since the compliance with the public health advisory is voluntary. As of 10 March, it was estimated by KSA health authorities that only 54% of international Umrah pilgrims have complied with the meningococcal vaccination requirements.  As returning travelers may spread the disease to their local communities, this risk is further heightened when there is lower compliance with meningococcal vaccination among pilgrims.  

Preparedness and surveillance efforts must be maintained year-round, with particular emphasis during peak periods like Ramadan and school holidays that often see a sharp increase in pilgrim numbers. In addition, the risk of importation of meningococcal disease is increased during the epidemic season in the countries of the African meningitis belt (i.e. December through June), several of which are home to large Muslim populations. This potentially affects not only the pilgrims but also other travelers (including those traveling for non-religious purposes) and the wider community.

Another risk factor is the emergence of antibiotic resistance for N. meningitidis strains to fluoroquinolones (ciprofloxacin) and potentially third generation cephalosporins, which can complicate post-exposure prophylaxis and treatment options for individuals with IMD. The growing influx of tourists and relatively long incubation period may account for increased risk of international spread.


WHO advice

Meningococcal disease remains a key public health concern at mass gatherings such as Hajj and Umrah. Despite mandatory vaccination policies, declining compliance in recent years has increased transmission risks.

Preventive and control measures should focus on:

- Ensuring high vaccination coverage before travel.
- Enhancing timely detection, investigation and management of cases and their close contacts.
- Enhancing real-time surveillance and monitoring antimicrobial resistance trends.
- Strengthening risk communication and community engagement to improve compliance.
- Strengthening vaccination coverage and compliance for Umrah travelers

WHO strongly advises individuals attending mass gatherings such as Hajj and Umrah to receive vaccination against meningococcal disease at least 10 days prior to travel. This measure is considered the most effective strategy to prevent the disease and potential outbreaks during these events. Specifically, WHO recommends that all pilgrims receive the quadrivalent meningococcal conjugate vaccine, which covers serogroups A, C, W, and Y, prior to traveling.​

The authorities of KSA require incoming pilgrims to hold proof of vaccination with quadrivalent meningococcal conjugate vaccine ACWY. This, and other health related entry requirements, are available on the official web site of the Ministry of Health of Saudi Arabia and other governmental platforms. States Parties shall make aware immigration authorities and conveyance operators of health-related requirements implemented by the Saudi Arabia, so that the validity of heath documents carried by travelers to Saudi Arabia can be duly checked before departure and prior to arrival in Saudi Arabia.

Promotion of coordination among ministries of health, civil aviation, immigration authorities, and Hajj/Umrah tour operators to ensure harmonized implementation of vaccination and entry requirements, including pre-departure checks.

Enhancing timely case detection, investigation, and management:

Timely detection and confirmation as well as prompt, appropriate management of cases are critical control measures against meningococcal disease. Suspected cases should undergo laboratory confirmation, which requires the isolation of N. meningitidis from a normally sterile body fluid, including blood, cerebrospinal fluid, or less commonly, pleural, pericardial or synovial fluid. Confirmatory tests include culture with antimicrobial susceptibility testing as well as molecular investigations (e.g. PCR).

Antibiotic therapy, typically administered for a total duration of 5 to 7 days, is the cornerstone of treatment. Empiric therapy with intravenous ceftriaxone or cefotaxime should be initiated in suspected cases as soon as possible. Once N. meningitidis is isolated, the antibiotic regimen should be reviewed and adjusted according to AST results.

Individuals with prolonged exposure while in close proximity to an index case and as well as those directly exposed to their oral secretions are at increased risk of infection. Post-exposure antibiotic prophylaxis is therefore recommended for close contacts as a measure to prevent secondary transmission and eradicate asymptomatic nasopharyngeal carriage. Considering the rising concerns related to ciprofloxacin-resistance among  N. meningitidis isolates, the drug of choice for post-exposure prophylaxis should be selected based upon prevalent antimicrobial resistance patterns. Pre-exposure antimicrobial prophylaxis is not recommended.  

Review and update contact tracing guidance for meningococcal infections on aircraft to ensure alignment with best practices. The RAGIDA (Risk Assessment Guidelines for Infectious Diseases Transmitted on Aircraft) framework from ECDC provides valuable guidance and can serve as a reference.

Expand the digital health passport system to include comprehensive vaccination records, ensuring all required immunization data for pilgrims is current and verifiable.

Strengthening surveillance:

WHO emphasizes the importance of robust surveillance systems for meningococcal disease to effectively control and prevent outbreaks and to continue sharing information between concerned health authorities. Host countries should conduct ongoing surveillance and rely on a risk-based approach focused on the evaluation, mitigation, and communication of risk to ensure timely and appropriate public health responses.

WHO also highlights the importance of monitoring antibiotic resistance trends by systematically testing N. meningitidis isolates in order to adequately inform post-exposure prophylaxis and treatment strategies. Available information pertaining to serogroups and genomic sequencing should be timely shared with global surveillance platforms in order to track strain variations and identify potential clusters.

Risk communication and community engagement:

Awareness of requirements through policy briefs to Ministers of Health should be undertaken, emphasizing the critical role of vaccination in preventing outbreaks.

Risk communication should be undertaken to raise community awareness and boost coverage by: Engaging religious leaders (e.g., mosque imams) to advocate for vaccination within Muslim communities, including during the Friday Prayer Khutba. Other RCCE measures could include: disseminate vaccination requirements through Hajj/Umrah tour operators, mosques, embassies, and airports; work with religious leaders (e.g., imams) to promote health messaging, especially during sermons and gatherings such as Friday prayers; ensure vaccination messaging is clearly visible on official websites (e.g., Saudi MoH, embassies) and in travel documents; launching public awareness campaigns to emphasize the importance and effectiveness of vaccination in preventing meningococcal disease, utilizing social media, traditional media, and community outreach initiatives.

An information note should be provided to close contacts to raise awareness about the signs and symptoms of disease, along with contact details for reaching health authorities.  

WHO does not recommend any restriction on travel and/or trade to the Kingdom of Saudi Arabia on the basis of the information available for the current event.

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#USA, Monitoring for Avian #Influenza A(#H5) Virus In #Wastewater (as of April 11 '25)



{Excerpt}

Time Period: March 30, 2025 - April 05, 2025

-- H5 Detection4 sites (1.1%)

-- No Detection372 sites (98.9%)

-- No samples in last week256 sites




(...)

Source: US Centers for Disease Control and Prevention, https://www.cdc.gov/bird-flu/h5-monitoring/index.html

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#Japan - Equine #influenza virus (Inf. with) - Immediate notification

 <Outbreaks 1-3> In early April, Livestock Hygiene Service Centres (LHSCs) in Kumamoto Prefecture received notifications from farmers with animals presenting clinical signs and collected samples. On 8 April, the LHSCs confirmed positive for Equine Influenza by RT-PCR. Genotyping is currently underway.

Source: WOAH, https://wahis.woah.org/#/in-review/6420

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Detection of #Measles in #Texas #Wastewater

Abstract

Measles outbreaks continue to pose significant public health challenges globally despite the availability of effective vaccines. In this study, we evaluated wastewater-based surveillance for detection of measles virus during an ongoing outbreak in Texas. Weekly wastewater samples collected from two Texas cities between January 2 and March 17, 2025 were analyzed using multiple RT-PCR assays targeting the nucleoprotein and matrix genes of the measles virus. Viral RNA was detected in multiple days from both cities, with City A showing positives from January 13 and City B from January 6, both predating the first confirmed case in the state on January 23. Sequencing of PCR amplicons confirmed the specificity of detection and phylogenetic analysis using global and U.S. measles genome databases further validated that the viral RNA belonged to the currently circulating genotype D8. Our findings demonstrate that wastewater surveillance can provide early evidence of measles virus circulation in communities before clinical cases are recognized and can support public health responses to these re-emerging infectious diseases.

Source: MedRxIV, https://www.medrxiv.org/content/10.1101/2025.04.08.25325475v1

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Thursday, April 10, 2025

Emergence of #Influenza #H1N1pdm09 6B.1 A.5a.2a and 6B.1 A.5a.2a.1 Subclades Leading to Subtyping #Failure in a Commercial Molecular #Assay

Highlights

• Impact of genetic evolution in influenza A(H1N1)pdm09 on subtyping assay performance.

• Influenza A subtyping assays are susceptible to primer- or probe-binding mismatches.

• Subclades 6B.1 A.5a.2a.1 and 6B.1 A.5a.2a harbour mutations that caused subtyping failures in some specimens.

• Sequencing confirmed all specimens were H1N1pdm09, within recognized subclades.


Abstract

Background

During the 2023–2024 and early 2024–2025 influenza seasons, several influenza A-positive specimens in our laboratory failed subtyping for H1, H1pdm09, and H3 using the Allplex Respiratory Panel 1 (Allplex RP1) (Seegene Inc.). This study aimed to identify the cause of these subtyping failures.

Materials and Methods

Between August 2023 and December 2024, 23 nasopharyngeal specimens tested positive for influenza A but were unsubtypeable for H1, H1pdm09, and H3. Confirmatory testing by the manufacturer included target-specific PCR for the M and HA genes, followed by sequencing to determine subclades.

Results

Among the 23 unsubtypeable specimens, 22 yielded PCR products for sequencing. Of these, 21 belonged to subclade 6B.1 A.5a.2a.1 and one to 6B.1 A.5a.2a. Sequence analysis revealed mismatches in the H1pdm09 primer/probe-binding regions of Allplex RP1, explaining the subtyping failures. Despite testing negative for H1pdm09 in Allplex RP1, sequencing confirmed their classification as H1N1pdm09 subclades with HA gene mutations.

Conclusions

Subclades 6B.1 A.5a.2a.1 and 6B.1 A.5a.2a harbour mutations that contributed to subtyping failures in some specimens tested with a commercial assay. While unsubtypeable influenza A results often raise concerns about emerging strains, sequencing confirmed that all unsubtypeable specimens tested with Allplex RP1 belonged to H1N1pdm09 within recognised subclades. Thus, such subtyping failures in this assay do not necessarily indicate a novel or zoonotic virus, though genomic surveillance remains essential.

Source: Journal of Clinical Virology, https://www.sciencedirect.com/science/article/abs/pii/S1386653225000393?dgcid=rss_sd_all

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Avian #influenza A(#H5N6) virus detected during live-poultry #market #surveillance linked to a #human #infection in #Changsha, #China, from 2020 to 2023

Abstract

In November 2022, we reported a fatal case of human infection caused by a highly pathogenic avian influenza A(H5N6) virus bearing a clade 2.3.4.4b HA gene in Changsha City. We investigated the transmission route and distribution of the H5N6 virus in the largest live-poultry market (LPM), which is linked to the human infection. A total of 1357 samples from the LPM were collected for avian influenza A virus detection from 2020 to 2023. The proportion of LPM samples positive for H5 subtype avian influenza virus was 14.30% (194/1357). Sequences of H5N6 (n = 10) and H5N1 (n = 4) avian influenza viruses were obtained from the LPM samples using next-generation sequencing. The complete genome sequence of the H5N6 virus from the human infection case, A/Changsha/1/2022(EPI_ISL_16466440), was determined and analyzed. The PB1 and PB2 segments shared 99.65% and 99.23% sequence identity with A/duck/Hunan/S40199/2021(H5N6) and A/Whooper swan/Sanmenxia/H615/2020(H5N8), respectively. The other segments showed the highest sequence similarity to strain A/Guangdong/1/2021(H5N6), which was isolated in Guangzhou. L89V and I292V substitutions in the PB2 protein were predicted from the A/Changsha/1/2022 genome sequence. Phylogenetic analysis based on the HA gene showed that A/Changsha/1/2022 and other H5 subtype isolates obtained from the LPM grouped together in the 2.3.4.4b branch. Bayesian evolutionary analysis of the HA gene showed that clade 2.3.4.4b of the H5N6 virus is likely to have been prevalent in Hunan Province around October 2021. In conclusion, we confirmed that the clade 2.3.4.4b HA gene of A/Changsha/1/2022 virus recombined with those of local strains. These results demonstrate the importance of continuous surveillance of H5N6 influenza viruses.

Source: Archives of Virology, https://link.springer.com/article/10.1007/s00705-025-06280-y

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Wednesday, April 9, 2025

#Global #Prevalence and #Distribution of #H9 Subtype of Avian #Influenza Viruses in Wild #Birds: Literature Review with Meta-Analysis

Abstract

Background

As a natural accelerator of highly pathogenic avian influenza in wild birds, the H9 subtype of avian influenza poses a substantial threat to both humans and the poultry industry. A comprehensive meta-analysis is necessary to assess the current status of the global H9 outbreak. In this research, a literature review and meta-analysis are presented on the surveillance studies of the H9 subtype of avian influenza in wild birds worldwide up to 2024.

Methods

A comprehensive search strategy was employed, utilizing the China Science and Technology Journal Database, China National Knowledge Infrastructure, PubMed, Google Scholar, and Scientific Direct databases. The exclusion criteria for this study included duplicate studies, reviews, other host studies, as well as research with inconsistent or insufficient data. An analysis was conducted on data obtained from a total of 31 publications. The rate-conversion analyses were conducted using a random-effects model in the “meta” package of the “R” software, with the PFT method implemented.

Results

In the meta-analysis, the prevalence of wild bird H9 avian influenza virus (AIV) was found to be 0.02% (193 out of 365,972). Statistically significant higher prevalences of wild bird influenza A virus were observed in Norway and South Africa (0.87%, 21/2417 and 0.44%, 10/1155, respectively) in comparison with other regions. Within the Anseriformes family, the prevalence rate was much greater (0.17%, 80 out of 90,014) compared with other species. In addition, we performed subgroup analyses that included geographical variables. These assessments showed a higher prevalence of H9 in wild birds in cold regions (0.08%, 30/100,691).

Conclusion

In summary, our results suggest that the occurrence of H9 AIV in avian populations differs among different geographical areas and species. Therefore, it is necessary to conduct further surveillance on the prevalence of AIV in wild birds to guide the creation of strong and efficient regulatory strategies targeted at eradicating the transmission of AIV across different species.

Source: Vector-Borne and Zoonotic Diseases, https://www.liebertpub.com/doi/abs/10.1089/vbz.2024.0111

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