Sunday, May 18, 2025

Baptism of St Zenobius and His Appointment as Bishop (Sandro Botticelli, 1500 - 05)


 Public Domain.

Source: WikiArt, https://www.wikiart.org/en/sandro-botticelli/baptism-of-st-zenobius-and-his-appointment-as-bishop-1505

____

#Evolution of #Antiviral Drug #Resistance in #SARS-CoV-2

Abstract

The COVID-19 pandemic has had a significant impact and continues to alarm the entire world due to the rapid emergence of new variants, even after mass vaccinations. There is still an urgent need for new antivirals or strategies to combat the SARS-CoV-2 infections; however, we have success stories with nirmatrelvir. Drug repurposing and drug discovery may lead to a successful SARS-CoV-2 antiviral; however, rapid drug use may cause unexpected mutations and antiviral drug resistance. Conversely, novel variants of the SARS-CoV-2 can diminish the neutralizing efficacy of vaccines, thereby enhancing viral fitness and increasing the likelihood of drug resistance emergence. Additionally, the disposal of antivirals in wastewater also contributes to drug resistance. Overall, the present review summarizes the strategies and mechanisms involved in the development of drug resistance in SARS-CoV-2. Understanding the mechanism of antiviral resistance is crucial to mitigate the significant healthcare threat and to develop effective therapeutics against drug resistance.

Source: Viruses, https://www.mdpi.com/1999-4915/17/5/722

____

#WHO #clinical practice #guidelines for #influenza: an #update

Abstract

Background

Every year, more than one billion people around the world are infected with influenza, an acute infection of the respiratory tract. Influenza spreads from person to person through air, contaminated hands or objects. Antiviral and immunomodulatory drugs are available for treatment of patients and prophylaxis of exposed persons. Reverse transcription polymerase chain reaction (RT-PCR), nucleic acid amplification tests (NAATs) and rapid tests are available for the diagnosis of influenza. 

Objective 

The aim of this World Health Organization (WHO) guideline is to provide recommendations for the diagnosis, drug treatment and prophylaxis of influenza.

Method

This updated guideline has been developed in accordance with standards for trustworthy guidelines. The recommendations are based on systematic reviews on safety and effectiveness. They take into account the magnitude of benefits and harms of treatments, the reliability of the evidence, and the needs of patients and healthcare professionals.

Results

For non-severe influenza, there is a conditional recommendation to use baloxavir if the risk of severe illness is high. Antivirals are not recommended if the risk is low. There is also a strong recommendation against the use of antibiotics if bacterial co-infection is unlikely. Oseltamivir is conditionally recommended for severe influenza. Not recommended are peramivir and zanamivir, as well as macrolide antibiotics (in the absence of co-infection), mTOR inhibitors and plasma therapy, and corticosteroids. Baloxavir and oseltamivir are conditionally recommended for prophylaxis in asymptomatic persons who have been exposed to seasonal influenza viruses and would be at very high risk of becoming hospitalised. For zoonotic influenza, laninamivir and zanamivir are also conditionally recommended in addition to baloxavir and oseltamivir, regardless of individual risk. For diagnosis, the use of NAAT or digital immunoassay (DIA) for suspected non-severe influenza and nucleic acid amplification test (NAAT) for suspected severe influenza is recommended.

Source: Gesundheitswesen, https://www.thieme-connect.de/products/ejournals/abstract/10.1055/a-2571-3357#info

____

Saturday, May 17, 2025

#Coronavirus Disease Research #References (by AMEDEO, May 17 '25)

 


    Am J Respir Crit Care Med

  1. EDDY RL, Sin DD
    Loss of Lung Function Led to Loss of Life During the COVID-19 Pandemic.
    Am J Respir Crit Care Med. 2025.
    PubMed        


    Ann Intern Med

  2. JACOBS JW, Booth GS, Lewis-Newby M, Saifee NH, et al
    Medical, Societal, and Ethical Considerations for Directed Blood Donation in 2025.
    Ann Intern Med. 2025 May 13. doi: 10.7326/ANNALS-25-00815.
    PubMed         Abstract available


    BMJ

  3. WISE J
    Covid-19: Attitudes shifted after politicians broke rules, report says.
    BMJ. 2025;389:r960.
    PubMed        


    Br J Anaesth

  4. COPLEY S, Carty S, Brown M, Mishra S, et al
    Bridging the GAP: a critical analysis of pain management services in the United Kingdom.
    Br J Anaesth. 2025;134:1597-1602.
    PubMed         Abstract available


    Clin Infect Dis

  5. HAWKINS KL, Dandachi D, Verzani Z, Brannock MD, et al
    HIV Infection and Long COVID: A RECOVER Program, Electronic Health Record Based Cohort Study.
    Clin Infect Dis. 2025 May 12:ciaf242. doi: 10.1093.
    PubMed         Abstract available

  6. KONOPNICKI D, Gilles C, Manigart Y, Barlow P, et al
    Immunogenicity and safety of two versus three doses of 9-valent vaccine against Human papillomavirus (HPV) in women with HIV: the Papillon randomized trial.
    Clin Infect Dis. 2025 May 13:ciaf241. doi: 10.1093.
    PubMed         Abstract available

  7. VALENCIA D, Edwards L, Horter L, Turner H, et al
    "I Didn't Know Him Before the Pandemic... Now He's on My Speed Dial": Strengthening Collaboration Between Infectious Diseases Physicians and State and Local Public Health for Future Public Health Emergencies.
    Clin Infect Dis. 2025 May 13:ciaf179. doi: 10.1093.
    PubMed         Abstract available

  8. AMARIN JZ, Toepfer AP, Spieker AJ, Hayek H, et al
    Respiratory Syncytial Virus Co-Detection With Other Respiratory Viruses Is Not Significantly Associated With Worse Clinical Outcomes Among Children Aged <2 Years: New Vaccine Surveillance Network, 2016-2020.
    Clin Infect Dis. 2025 May 9:ciaf194. doi: 10.1093.
    PubMed         Abstract available


    Emerg Infect Dis

  9. MACCANNELL D, MacInnis B, Santibanez S, Honein MA, et al
    A Decade of Partnerships and Progress in Pathogen Genomics in Public Health Practice.
    Emerg Infect Dis. 2025;31:1-2.
    PubMed        

  10. MOORE J, Sanon R, Khudyakov Y, Barnes N, et al
    Strategies and Opportunities to Improve Community Health through Advanced Molecular Detection and Genomic Surveillance of Infectious Diseases.
    Emerg Infect Dis. 2025;31:9-13.
    PubMed         Abstract available

  11. FLOREK KR, Young EL, Incekara K, Libuit KG, et al
    Advantages of Software Containerization in Public Health Infectious Disease Genomic Surveillance.
    Emerg Infect Dis. 2025;31:18-21.
    PubMed         Abstract available

  12. PORTER WT, Engelthaler DM, Hepp CM
    Genomic Epidemiology for Estimating Pathogen Burden in a Population.
    Emerg Infect Dis. 2025;31:22-24.
    PubMed         Abstract available

  13. JULES E, Decker C, Bixler BJ, Ahmed A, et al
    Respiratory Virus Detection and Sequencing from SARS-CoV-2-Negative Rapid Antigen Tests.
    Emerg Infect Dis. 2025;31:39-44.
    PubMed         Abstract available

  14. FRIEDMAN CR, Morfino RC, Ernst ET
    Leveraging a Strategic Public-Private Partnership to Launch an Airport-Based Pathogen Monitoring Program to Detect Emerging Health Threats.
    Emerg Infect Dis. 2025;31:35-38.
    PubMed         Abstract available

  15. EMMEN IE, Vuyk WC, Lail AJ, Wolf S, et al
    SARS-CoV-2 Genomic Surveillance from Community-Distributed Rapid Antigen Tests, Wisconsin, USA.
    Emerg Infect Dis. 2025;31:61-69.
    PubMed         Abstract available

  16. FEISTEL DJ, Welsh R, Mercante J, Mark-Carew M, et al
    Detection and Tracking of SARS-CoV-2 Lineages through National Wastewater Surveillance System Pathogen Genomics.
    Emerg Infect Dis. 2025;31:57-60.
    PubMed         Abstract available

  17. PHAM K, Chaguza C, Lopes R, Cohen T, et al
    Large-Scale Genomic Analysis of SARS-CoV-2 Omicron BA.5 Emergence, United States.
    Emerg Infect Dis. 2025;31:45-56.
    PubMed         Abstract available


    Infect Control Hosp Epidemiol

  18. BROWN MARUSIAK A, Sickbert-Bennett E, Babcock H, Westreich D, et al
    Characterizing presenteeism among healthcare personnel at an academic medical center across eras of the COVID-19 pandemic.
    Infect Control Hosp Epidemiol. 2025 May 16:1-9. doi: 10.1017/ice.2025.
    PubMed         Abstract available

  19. STERN RA, Bashaw K, Talbot TR
    Isolating the burden of transmission-based precautions for COVID-19: walk-in clinic-based healthcare personnel perspectives.
    Infect Control Hosp Epidemiol. 2025 May 16:1-2. doi: 10.1017/ice.2025.
    PubMed        


    Int J Infect Dis

  20. INZAULE S, Silva R, Thwin SS, Waasila J, et al
    In-hospital Mortality Among Children and Adults Hospitalized with COVID-19 in Africa Across Pre-Delta, Delta, and Omicron SARS-CoV-2 Waves.
    Int J Infect Dis. 2025 May 7:107924. doi: 10.1016/j.ijid.2025.107924.
    PubMed         Abstract available


    J Infect

  21. GAO Y, Zhang J, Liu M, Bu Q, et al
    Superior antiviral efficacy of combined 3CL protease and RdRp inhibition compared to 3CL protease inhibitor monotherapy in hospitalized COVID-19 patients.
    J Infect. 2025;90:106502.
    PubMed        

  22. HOOG M, Westrhenen ESH, Winkel AM, Jong MD, et al
    Impact of co-infection with SARS-CoV-2 and other respiratory viruses on illness: Pooled analyses of 11 COVID-19 cohorts.
    J Infect. 2025 May 9:106501. doi: 10.1016/j.jinf.2025.106501.
    PubMed         Abstract available

  23. PETER RS, Sedelmaier L, Nieters A, Brockmann SO, et al
    Symptom burden and post-COVID-19 syndrome 24 months following SARS-CoV-2 infection: Longitudinal population-based study.
    J Infect. 2025;90:106500.
    PubMed         Abstract available


    J Med Virol

  24. WU Z, Fan S, Xu H, Feng F, et al
    Identifying Neurological Autoantibodies in COVID-19: mGluR2 as a Marker of Immune Dysregulation During the Omicron Outbreak in China.
    J Med Virol. 2025;97:e70381.
    PubMed         Abstract available

  25. HABEEBUR-RAHMAN SP, Khan FAA, Mohd-Azlan J, Gumal M, et al
    Comparative Analysis of Quan and Watanabe Pan-Coronavirus Assays for Bat Coronavirus Diversity in Sarawak, East Malaysia.
    J Med Virol. 2025;97:e70389.
    PubMed         Abstract available


    J Virol

  26. LV L, Luo H, Yi J, Zhang K, et al
    IFITM proteins are key entry factors for porcine epidemic diarrhea coronavirus.
    J Virol. 2025 May 12:e0202824. doi: 10.1128/jvi.02028.
    PubMed         Abstract available

  27. FRIEDLANDER AM
    Early short-course treatment fails to prevent disease or relapse upon discontinuance of treatment in infections in addition to COVID-19.
    J Virol. 2025 May 12:e0038125. doi: 10.1128/jvi.00381.
    PubMed        

  28. KONDO T, Suzuki R, Yajima H, Kawahara S, et al
    Determinants of susceptibility to SARS-CoV-2 infection in murine ACE2.
    J Virol. 2025 May 12:e0054325. doi: 10.1128/jvi.00543.
    PubMed         Abstract available

  29. FURUSAWA Y, Iwatsuki-Horimoto K, Yamayoshi S, Kawaoka Y, et al
    The NSP6-L260F substitution in SARS-CoV-2 BQ.1.1 and XBB.1.16 lineages compensates for the reduced viral polymerase activity caused by mutations in NSP13 and NSP14.
    J Virol. 2025 May 13:e0065625. doi: 10.1128/jvi.00656.
    PubMed         Abstract available

  30. BROADBENT A
    A veterinary virapalooza: a summary of the 2024 American Society for Virology (ASV) Veterinary/Zoonotic Virology Satellite Symposium and online H5N1 panel discussion.
    J Virol. 2025 May 13:e0049925. doi: 10.1128/jvi.00499.
    PubMed         Abstract available


    Lancet Infect Dis

  31. SAADATIAN-ELAHI M, Rabilloud M, Mohlmann TWR, Langlois-Jacques C, et al
    Effectiveness of integrated vector management on the incidence of dengue in urban Malaysia: a cluster-randomised controlled trial.
    Lancet Infect Dis. 2025 May 12:S1473-3099(25)00086.
    PubMed         Abstract available


    Science

  32. CORNWALL W
    With Trump's cuts escalating, 'fear factor' silences researchers.
    Science. 2025;388:684-685.
    PubMed         Abstract available

#Influenza and Other Respiratory Viruses Research #References (by AMEDEO, May 17 '25)

 


    Biochem Biophys Res Commun

  1. PERFILOVA KV, Matyuta IO, Minyaev ME, Boyko KM, et al
    High-resolution structure reveals enhanced 14-3-3 binding by a mutant SARS-CoV-2 nucleoprotein variant with improved replicative fitness.
    Biochem Biophys Res Commun. 2025;767:151915.
    PubMed         Abstract available


    J Gen Virol

  2. AHMED MN, Abu Habib US, Abdallah AM, Emara MM, et al
    The impact of pre-existing immunity on the emergence of within-host immune-escape mutations in Omicron lineages.
    J Gen Virol. 2025;106:002108.
    PubMed         Abstract available


    J Immunol

  3. NOURI HR, Schaunaman N, Kraft M, Numata M, et al
    Tollip deficiency enhances mitophagy and reduces STING activation in influenza A virus-infected mice.
    J Immunol. 2025 May 16:vkaf058. doi: 10.1093.
    PubMed         Abstract available


    J Infect Dis

  4. ZHU S, Quint J, Leon T, Sun M, et al
    Estimating Influenza Vaccine Effectiveness Against Laboratory-Confirmed Influenza Using Linked Public Health Information Systems, California, 2023-2024 Season.
    J Infect Dis. 2025 May 13:jiaf248. doi: 10.1093.
    PubMed         Abstract available


    J Virol

  5. KOUTSAKOS M, Reynaldi A, Aban M, Barr IG, et al
    Binding antibody titers against the hemagglutinin and neuraminidase correlate with protection against medically attended influenza A and B disease.
    J Virol. 2025 May 13:e0039125. doi: 10.1128/jvi.00391.
    PubMed         Abstract available


    J Virol Methods

  6. WU JS, Kan JY, Chang YS, Phuong Le UN, et al
    Developing Zika virus-transduced hACE2 expression models for severe acute respiratory syndrome coronavirus 2 infection in vitro and in vivo.
    J Virol Methods. 2025 Apr 14:115166. doi: 10.1016/j.jviromet.2025.115166.
    PubMed         Abstract available

  7. PUGLIA I, Caporale M, Di Teodoro G, Spedicato M, et al
    Optimization of an infectious subgenomic amplicons reverse genetics protocol for the rescue of synthetic coronaviruses.
    J Virol Methods. 2025;336:115152.
    PubMed         Abstract available


    PLoS Comput Biol

  8. FERRAZ MVF, Adan WCS, Lima TE, Santos AJC, et al
    Design of nanobody targeting SARS-CoV-2 spike glycoprotein using CDR-grafting assisted by molecular simulation and machine learning.
    PLoS Comput Biol. 2025;21:e1012921.
    PubMed         Abstract available


    PLoS One

  9. STEPHENS CR, Gutierrez JP
    A conceptual and computational framework for modeling the complex, adaptive dynamics of epidemics: The case of the SARS-CoV-2 pandemic in Mexico.
    PLoS One. 2025;20:e0323473.
    PubMed         Abstract available

  10. KIM SH, Jung M
    Disentangling behavioral determinants of seasonal influenza vaccination in post-corona era: An integrated model approach.
    PLoS One. 2025;20:e0323184.
    PubMed         Abstract available

  11. SZNAJDER KK, Legro RS, Teti D, Mackeen AD, et al
    Maternal and infant health during the COVID-19 pandemic - A Pennsylvania Study Protocol.
    PLoS One. 2025;20:e0323891.
    PubMed         Abstract available

  12. GAUFFIN K, Ostergren O, Cederstrom A
    The global response to the pandemic: An empirical cluster analysis of policies targeting COVID-19.
    PLoS One. 2025;20:e0322692.
    PubMed         Abstract available

  13. THAKKAR V, Silverman GM, Kc A, Ingraham NE, et al
    A comparative analysis of large language models versus traditional information extraction methods for real-world evidence of patient symptomatology in acute and post-acute sequelae of SARS-CoV-2.
    PLoS One. 2025;20:e0323535.
    PubMed         Abstract available

  14. LAWRENCE MR, Arnetz JE, Counts SE, Ahmed A, et al
    Self-reported health, neuropsychological tests and biomarkers in fully recovered COVID-19 patients vs patients with post-COVID cognitive symptoms: A pilot study.
    PLoS One. 2025;20:e0315486.
    PubMed         Abstract available

  15. SANCHEZ CODEZ MI, Benavente Fernandez I, Moyer K, Leber AL, et al
    The differential burden of acute rhinovirus infections in children with underlying conditions.
    PLoS One. 2025;20:e0313237.
    PubMed         Abstract available

  16. JACOBS M, Haelermans C, Meeter M
    Effective remediation programs for vulnerable students to overcome learning loss.
    PLoS One. 2025;20:e0323352.
    PubMed         Abstract available

  17. BUSZKIEWICZ JH, Tseng AS, Dai J, Ismach A, et al
    Association between early-pandemic food assistance use and subsequent food security trajectories among households in Washington State during the first three years of the COVID-19 pandemic.
    PLoS One. 2025;20:e0321585.
    PubMed         Abstract available

  18. KAWASE A, Fukushige M
    Expectations regarding the effectiveness of mask-wearing and pandemic fatigue: The experience in Japan.
    PLoS One. 2025;20:e0321402.
    PubMed         Abstract available

  19. FAQIHI F, Perri R, Chien J, Cho JG, et al
    Universal health care delivery mitigates socioeconomic-related risk for adverse outcomes in hospitalised patients: Lessons from the COVID-19 pandemic in Australia.
    PLoS One. 2025;20:e0322780.
    PubMed         Abstract available

  20. XIA Z, Meng J, Wang X, Liu P, et al
    Efficacy of BCG vaccination against COVID-19 in health care workers and non-health care workers: A meta-analysis of randomized controlled trials.
    PLoS One. 2025;20:e0321511.
    PubMed         Abstract available

  21. SINGH-VERDEFLOR KD, Kelly MM, DeMuri GP, Warner G, et al
    Differences in COVID-19 testing perceptions among caregivers of children with medical complexity by rurality.
    PLoS One. 2025;20:e0323651.
    PubMed         Abstract available

  22. KANERVA M, Rautava K, Kurvinen T, Marttila H, et al
    Economic impact and disease burden of COVID-19 in a tertiary care hospital: A three-year analysis.
    PLoS One. 2025;20:e0323200.
    PubMed         Abstract available

  23. ABRAMOVA D, Haase PM, Just AM, Frank S, et al
    Impact of prior SARS-CoV-2 infection on perioperative cardiac, pulmonary and neurocognitive complications in older patients: Study protocol for an observative case control study.
    PLoS One. 2025;20:e0323599.
    PubMed         Abstract available

  24. BEISSAT K, Lattard V, Picard-Meyer E, Fafournoux A, et al
    Infectious potential and circulation of SARS-CoV-2 in wild rats.
    PLoS One. 2025;20:e0316882.
    PubMed         Abstract available

  25. NKHATA A, Shi X, Zhang Y, Chen H, et al
    Construction and application of SARS-CoV-2 protein ontology (CoVPO).
    PLoS One. 2025;20:e0317589.
    PubMed         Abstract available

  26. LIN YE, Chien LY, Hu ML
    The relationships among nurses' spiritual health, sleep quality, and stress and the factors influencing stress during the late global COVID-19 pandemic: A cross- sectional study.
    PLoS One. 2025;20:e0323164.
    PubMed         Abstract available

  27. YANG MJ, Gaulin M, Seegert N, Fan Y, et al
    What drives the effectiveness of social distancing in combating COVID-19 across U.S. states?
    PLoS One. 2025;20:e0308244.
    PubMed         Abstract available

  28. HASAN MB, Hossain MN, Khatun H, Uddin GS, et al
    Using smart transportation assets to hedge fossil energy markets: Evidence from quantile-based VAR approach.
    PLoS One. 2025;20:e0317748.
    PubMed         Abstract available

  29. SOARES P, Gomez V, Gaio V, Santos JA, et al
    A protocol for high-dose quadrivalent influenza vaccine effectiveness in the community and long-term care facilities using electronic health records.
    PLoS One. 2025;20:e0314177.
    PubMed         Abstract available

  30. DELGADO-ALONSO C, Matias-Guiu JA, Alvarado JM, Diez-Cirarda M, et al
    Computerized neuropsychological assessment in post-COVID condition.
    PLoS One. 2025;20:e0322304.
    PubMed         Abstract available

  31. NOVELLI S, Reinkemeyer C, Bulaev D, O'Sullivan MP, et al
    Waning of anti-SARS-CoV-2 antibodies after the first wave of the COVID-19 pandemic in 2020: A 12-month-evaluation in three population-based European studies.
    PLoS One. 2025;20:e0320196.
    PubMed         Abstract available

  32. WANG H, Lu L, Liu Z, Sun Y, et al
    Study on measurement and prediction of agricultural product supply chain resilience based on improved EW-TOPSIS and GM (1,1)-Markov models under public emergencies.
    PLoS One. 2025;20:e0321248.
    PubMed         Abstract available

  33. LUKASCHEK K, Hentschel H, Rottenkolber M, Alberer M, et al
    Association of mental health, quality of life, and SARS-CoV-2 infection in individuals in need of care: Results from a multicentre registry study.
    PLoS One. 2025;20:e0323017.
    PubMed         Abstract available

  34. TURNER MM, Jang Y, Heo R, Ye Q, et al
    Mask wearing as a prosocial behavior: Proposing and testing the moral norms activation model.
    PLoS One. 2025;20:e0322921.
    PubMed         Abstract available

  35. GIERTHMUEHLEN M, Gierthmuehlen PC
    COVIVA: Effect of transcutaneous auricular vagal nerve stimulation on fatigue-syndrome in patients with Long Covid - A placebo-controlled pilot study protocol.
    PLoS One. 2025;20:e0315606.
    PubMed         Abstract available


    Vaccine

  36. FRANCIS MJ
    A rapid human vaccine process development map outlining lessons learnt from ChAdOx1 nCoV-19 vaccine during the COVID-19 pandemic.
    Vaccine. 2025;55:127040.
    PubMed         Abstract available

  37. BLACKWELL CK, Bekelman T, Bakre S, Jacobson LP, et al
    Sociodemographic differences in parental hesitancy to the COVID-19 vaccine.
    Vaccine. 2025;55:127041.
    PubMed         Abstract available

  38. FRIVOLD C, Giersing B, Amorij JP, Mvundura M, et al
    Identification of potential vaccines for use with microarray patches in low- and middle-income countries: An assessment from the Vaccine Innovation Prioritisation Strategy Alliance.
    Vaccine. 2025;55:126996.
    PubMed         Abstract available

  39. GAGNON D, Gubany C, Ouakki M, Malo B, et al
    Factors influencing acceptance of RSV immunization for newborns among pregnant individuals: A mixed-methods study.
    Vaccine. 2025;55:127062.
    PubMed         Abstract available

  40. TIRUNEH YM, Choi J, Cuccaro PM, Martinez J, et al
    Sociodemographic and health-related predictors of COVID-19 booster uptake among fully vaccinated adults.
    Vaccine. 2025;54:127048.
    PubMed         Abstract available

  41. NEWBERN EC, Shoaibi A, Haynes K, Blacketer C, et al
    A rapid cycle analytics framework for vaccine safety surveillance within a real-world data network: Experience with enhanced surveillance of the Janssen COVID-19 vaccine.
    Vaccine. 2025;55:127044.
    PubMed         Abstract available

  42. TILMANNE A, Pirson M, Leclercq P, Van Den Bulcke J, et al
    Evaluation of the costs of care for pediatric patients hospitalized for RSV: A retrospective cohort study in Belgium.
    Vaccine. 2025;55:127065.
    PubMed         Abstract available

  43. CENAT JM, Moshirian Farahi SMM, Dalexis RD, Xu Y, et al
    Vaccine hesitancy among racially diverse parents in Canada: The important role of health literacy, conspiracy beliefs and racial discrimination.
    Vaccine. 2025;55:127049.
    PubMed         Abstract available

  44. JIANG J, Lam KF, Lau EHY, Yin G, et al
    Estimation of trajectory of COVID-19 vaccines effectiveness against infection.
    Vaccine. 2025;55:127067.
    PubMed         Abstract available

  45. PEREZ MARC G, Coria LM, Ceballos A, Rodriguez JM, et al
    Immunogenicity and safety of monovalent and bivalent SARS-CoV-2 variant adapted RBD-based protein booster vaccines in adults previously immunized with different vaccine platforms: A phase II/III, randomized clinical trial.
    Vaccine. 2025;54:127045.
    PubMed         Abstract available

  46. ALVES K, Kouassi A, Plested JS, Kalkeri R, et al
    Immunogenicity and safety of a monovalent Omicron XBB.1.5 SARS-CoV-2 recombinant spike protein vaccine in previously unvaccinated, SARS-CoV-2 seropositive participants: Primary day-28 analysis of a phase 2/3 open-label study.
    Vaccine. 2025;55:127046.
    PubMed         Abstract available

  47. PAYNE AB, Novosad S, Sung HM, Zhang Y, et al
    Effectiveness of 2023-2024 COVID-19 vaccines against COVID-19-associated hospitalizations among adults aged >/=18 years with end stage kidney disease - United States, September 2023-April 2024.
    Vaccine. 2025;55:127010.
    PubMed         Abstract available

  48. PRALL S, Lopes A
    "Better to die trying": Vaccine perceptions and COVID-19 experiences in rural Namibian pastoralists.
    Vaccine. 2025;55:127061.
    PubMed         Abstract available

  49. LA EM, Sweeney C, Davenport E, Bunniran S, et al
    Pharmacy and healthcare provider offices as convenient adult vaccination settings in the US: Patient experiences from a survey of recently-vaccinated adults.
    Vaccine. 2025;54:127057.
    PubMed         Abstract available

  50. LEYNS C, McClenaghan E, Rodriguez P, Nguipdop-Djomo P, et al
    Hybrid, vaccine-induced and natural immunity against SARS-CoV-2 in traditional food markets in Bolivia (2020-2022): A cross-sectional analysis of a serological survey.
    Vaccine. 2025;54:127104.
    PubMed         Abstract available

  51. ENTRICAN G, Bredell H, Charlier J, Cunningham AF, et al
    Opportunities and challenges for the adoption of novel platform technologies to develop veterinary bacterial vaccines.
    Vaccine. 2025;54:127117.
    PubMed         Abstract available

  52. WEETS CM, Wilson R, Swadley H, Katz R, et al
    Strengthening health security through routine vaccination policy: A comprehensive analysis of childhood vaccination laws across 194 countries.
    Vaccine. 2025;54:127121.
    PubMed         Abstract available

  53. STONER MCD, Michaels J, Stocks JB, Mancuso N, et al
    Evaluating concurrency and gaps between self-report and vaccine card data for COVID-19 vaccination.
    Vaccine. 2025;54:127136.
    PubMed         Abstract available

  54. TAKEUCHI N, Chang B, Ishiwada N, Cho Y, et al
    Nationwide population-based surveillance of invasive pneumococcal disease in children in Japan (2014-2022): Impact of 13-valent pneumococcal conjugate vaccine and COVID-19 pandemic.
    Vaccine. 2025;54:127138.
    PubMed         Abstract available

  55. CARTER DM, Bloom CE, Kirchenbaum GA, Tsvetnitsky V, et al
    Corrigendum to "Cross-protection against H7N9 influenza strains using a live-attenuated H7N3 virus vaccine" [Vaccine (2015) 33(1) 108-16].
    Vaccine. 2025;57:127174.
    PubMed        

  56. MOU J, LaSalle G, Pflugeisen C, Sherls-Jones J, et al
    Practice, beliefs and intent in influenza vaccination among Hispanic patients during the pandemic: An interventional study.
    Vaccine. 2025;58:127207.
    PubMed         Abstract available

  57. XU J, Davoudpour S, Phillips G 2nd
    Applying the health belief model (HBM) to understand COVID-19 vaccine uptake among youth and young adults: Findings from a 6-month follow-up study in the United States.
    Vaccine. 2025;54:127002.
    PubMed         Abstract available

  58. MYBURGH L, Karsjens H, Blanas A, de Ligt A, et al
    Targeting the early life stages of SARS-CoV-2 using a multi-peptide conjugate vaccine.
    Vaccine. 2025;54:126989.
    PubMed         Abstract available

  59. RICCI L, Fery C, Tubach F, Agrinier N, et al
    Health care institutions and their physicians are the greatest promoters of COVID-19 vaccine acceptance among health care workers.
    Vaccine. 2025;54:127005.
    PubMed         Abstract available

  60. SKOCZYNSKA A, Golebiewska A, Wrobel-Pawelczyk I, Ronkiewicz P, et al
    The direct impact of mandatory PCV10 vaccination on invasive pneumococcal disease in Polish children.
    Vaccine. 2025;54:126999.
    PubMed         Abstract available

  61. VEDEL JO, Furtado O, Almeida LL, Nehal KR, et al
    Childhood vaccination coverages in rural Guinea-Bissau before and during the early COVID-19 pandemic, a cohort study.
    Vaccine. 2025;54:127011.
    PubMed         Abstract available

  62. DI CHIARA C, Karimi-Shahrbabak E, Peresin J, Farrar DS, et al
    A review of Canadian online resources providing information on COVID-19 vaccination for caregivers of children aged 5-11 years.
    Vaccine. 2025;54:126990.
    PubMed         Abstract available

  63. FUJI N, Gonzalez E, Salamone FN, Bajorski P, et al
    Comparison of Streptococcus pneumoniae nasopharyngeal colonization, serotype-specific and protein-specific antibody and cytokine levels in young children prior to, during and post COVID-19 pandemic.
    Vaccine. 2025;54:126954.
    PubMed         Abstract available

  64. DE SOUZA RA, Barreto FR, de Jesus Lima CCO, da Natividade MS, et al
    Efficacy of BCG vaccination on incidence, severity and clinical progression of COVID-19: A BCG-REVAC population analysis.
    Vaccine. 2025;54:126911.
    PubMed         Abstract available

  65. DESILVA MB, Vazquez-Benitez G, Seburg EM, Henderson MSG, et al
    Pregnant persons perceptions and uptake of prenatal RSV vaccine - Minnesota, 2023-2024.
    Vaccine. 2025;54:126958.
    PubMed         Abstract available

  66. DOWGIER G, Hobbs A, Greenwood D, Shawe-Taylor M, et al
    Accurate evaluation of live-virus microneutralisation for SARS-CoV-2 variant JN.1 in the assessment of vaccination and therapeutics.
    Vaccine. 2025;54:126960.
    PubMed         Abstract available

  67. LEE DW, Nasir A, Elbashir S, Jani H, et al
    mRNA-1273 vaccines adapted to JN.1 or KP.2 elicit cross-neutralizing responses against the JN.1 sublineages of SARS-CoV-2 in mice.
    Vaccine. 2025;54:126961.
    PubMed         Abstract available

  68. CARROLL M, Fox HB, Tran A, Chellappan G, et al
    SARS-CoV-2 conjugate vaccine elicits robust immune responses that can protect against evolving variants.
    Vaccine. 2025;54:126988.
    PubMed         Abstract available

  69. MOORE M, Anderson L, Schiffer JT, Matrajt L, et al
    Durability of COVID-19 vaccine and infection induced immunity: A systematic review and meta-regression analysis.
    Vaccine. 2025;54:126966.
    PubMed         Abstract available

  70. CHOI J, Feelemyer J, Choe K, Lynch K, et al
    Anti-vaccine attitudes and COVID-19 vaccine status at the end of the U.S. public health emergency.
    Vaccine. 2025;55:127003.
    PubMed         Abstract available

  71. RASKIN N, Hiligsmann M, Luyten J, Tubeuf S, et al
    Socio-demographic differences in citizen' preferences for distributing a scarce, lifesaving resource: A case study using COVID-19 vaccine distribution in Belgium.
    Vaccine. 2025;55:126997.
    PubMed         Abstract available

  72. HAO T, Ryan GE, Lydeamore MJ, Cromer D, et al
    Predicting immune protection against outcomes of infectious disease from population-level effectiveness data with application to COVID-19.
    Vaccine. 2025;55:126987.
    PubMed         Abstract available

  73. HAMID S, Simeone RM, Newhams MM, Halasa N, et al
    Concordance between parent-reported and documented COVID-19 vaccination status among hospitalized children and adolescents: Implications for vaccine effectiveness estimates, May 2021-October 2023.
    Vaccine. 2025;54:126891.
    PubMed         Abstract available

  74. KAISER S, Kaiser S, Reis J, Marschalek R, et al
    Quantification of objective concentrations of DNA impurities in mRNA vaccines.
    Vaccine. 2025;55:127022.
    PubMed         Abstract available

  75. VACHON A, Keeshan A, Galipeau Y, Crawley AM, et al
    Alcohol consumption does not influence SARS-CoV-2 vaccine immunogenicity: A stop the spread Ottawa cohort analysis.
    Vaccine. 2025;55:127034.
    PubMed         Abstract available

  76. GOLDMAN RD, Hart RJ, Bone JN, Seiler M, et al
    Adverse events among early caregivers' COVID-19 vaccination correlated inversely with intention to vaccinate their children.
    Vaccine. 2025;55:127001.
    PubMed         Abstract available


    Virology

  77. LIU R, Song F, Sun L, Yan F, et al
    Exploring the pathogenic and transmission characteristics of JN.1 in golden hamsters based on different attack methods.
    Virology. 2025;608:110548.
    PubMed         Abstract available

  78. CAO L, Shi S, Zhang C, Zhao C, et al
    A phycobiliprotein-based reporter assay for the evaluation of SARS-CoV-2 main protease activity.
    Virology. 2025;608:110540.
    PubMed         Abstract available

History of Mass Transportation: The FS E.444.001 Italian Electric Locomotive

 

The FS E.444.001 Italian Electric Locomotive

Source: Wikipedia, https://it.wikipedia.org/wiki/Locomotiva_FS_E.444

By Manfred Kopka - Opera propria, CC BY-SA 4.0

____

Friday, May 16, 2025

Assessment of cross-reactive neutralizing #antibodies induction against #H5N1 clade 2.3.4.4b by prior seasonal influenza #immunization in retail #workers

Abstract

Highly pathogenic avian influenza (HPAI) H5N1 has been a global concern since its emergence in 1997, causing widespread outbreaks in birds and sporadic human infections. The clade 2.3.4.4b H5N1 virus has rapidly expanded across continents, infecting numerous mammalian species. In 2024, it was detected in dairy cattle for the first time in the U.S., along with human cases following exposure. In Canada, the first human case of this avian influenza was reported in a critically ill adolescent in late 2024. No human-to-human transmission has been documented, but concerns persist regarding mutations associated with enhanced virulence and human adaptation. Although seasonal influenza vaccines are not directed against H5N1, studies suggest that pre-existing immunity from prior infections or vaccinations may provide partial protection against severe H5N1 infections through cross-reactive immune response. Given the ongoing circulation of avian influenza and the rise in human infections, this study evaluated the effectiveness of neutralizing antibodies developed against seasonal influenza viruses and their cross-reactivity with recent H5N1 strains. Serum samples from 194 retail sector workers in Quebec, collected between late 2021 and 2022, were analyzed using a microneutralization assay. While strong neutralizing activity was found against seasonal influenza viruses, no neutralizing antibodies were detected against H5N1 strains in either vaccinated or unvaccinated individuals. These findings emphasize the need to evaluate cross-reactive antibodies against the neuraminidase protein of H5N1, assess cellular immune responses potentially linked to protection against severe HPAI H5N1 infections and targeted vaccine strategies against recently emerged H5N1 influenza viruses. Keywords: influenza, highly pathogenic avian influenza, H5N1, immunity, cross-reactivity, neutralization.

Source: MedRxIV, https://www.medrxiv.org/content/10.1101/2025.05.15.25327718v1

____

#Brazil - High pathogenicity avian #influenza #H5N1 viruses (#poultry) (Inf. with) - Immediate notification

 


The Official Veterinary Services (OVS) received a notification of acute mortality, neurological and digestive signs in a breeder farm. From the start of the OVS investigation, the premise was quarantined, including suspension of the movement of birds and products. Laboratory analysis identified H5N1 virus clade 2.3.4.4b. OVS is conducting an epidemiological investigation of the event and implementing the restrictions and measures in accordance with the National Contingency Plan for high pathogenicity avian influenza (HPAI).

Source: WOAH, https://wahis.woah.org/#/in-review/6484

____

#Czech Republic - #Influenza A #H5N1 viruses of high pathogenicity (Inf. with) (non-poultry including wild birds) (2017-) - Immediate notification



Sudden death of birds, clinical signs, non-commercial hobby flock of hens, products are used exclusively for own consumption in the same household.

Source: WOAH, https://wahis.woah.org/#/in-review/6471

____

Novel #Orthohantavirus Associated with #Hantavirus Pulmonary Syndrome in Northern #Argentina

Abstract

In this work, we performed the genetic characterization of a new variant of orthohantavirus associated with a fatal case of hantavirus pulmonary syndrome, outside the known endemic region, in northwestern Argentina. We first confirmed an orthohantavirus infection by ELISA, testing for the detection of IgM and IgG antibodies. Then, we extracted RNA from 100 microliters of serum, the only sample available, followed by RT-PCR. The amplicons were sequenced using Sanger and next-generation sequencing technology. We obtained partial sequences of 1253 bp, 799 bp and 1675 bp from the S-, M- and L-segments, respectively, showing low sequence identities with all the previously characterized hantaviruses (10.9%, 13.5% and 15.1% of the divergence, respectively). The phylogenetic analysis showed that this virus belongs to the Orthohantavirus andesense species (ANDV), and among the ANDV-like variants, it is more closely related to the Lechiguanas clade. Similar percentages of divergence were considered sufficient to distinguish AND-like variants in previous works. As the patient had no travel history before the onset of disease was reported, we conducted rodent surveys to confirm the presence of reservoirs. The rodent assemblage was compatible with the transitional zone among different ecoregions (Yungas, Chaco and Monte). Moreover, one of the species captured, Oligoryzomys flavescens, was previously described as a reservoir of hantavirus. This species may either host several variants across its range or encompass a species complex, as proposed by some authors.

Source: Viruses, https://www.mdpi.com/1999-4915/17/5/717

____

Yellow fever - Region of the #Americas (#WHO D.O.N., May 16 '25)

{Summary}

Situation at a glance

From 29 December 2024 and as of 26 April 2025 (with data for Ecuador updated as of 2 May 2025), a total of 212 confirmed human cases of yellow fever, including 85 deaths, have been reported to WHO by five countries in the Region of the Americas (case fatality rate (CFR) 40%). 

The cases have been reported in the Plurinational State of Bolivia, Brazil, Colombia, Ecuador and Peru

The 212 confirmed yellow fever cases reported so far in 2025 represent a threefold increase compared to the 61 confirmed cases reported in 2024. 

WHO is supporting affected countries in implementing coordinated actions to respond to the yellow fever cases and outbreaks. 

This includes: 

- enhancing preventive measures, 

- strengthening surveillance and case management, 

- improving risk communication and community engagement, and 

- implementing immunization activities. 

The current yellow fever situation in the Americas is driven by increased sylvatic transmission cycles

The occurrence of yellow fever cases outside of the Amazon basin, combined with high fatality, varying vaccination coverage across affected countries, and limited vaccine supply, contributes to the overall classification of yellow fever risk in the Region of the Americas, especially in endemic countries, as high

WHO emphasizes the importance of active surveillance, timely laboratory testing, cross-border coordination, and information sharing. 

Vaccination remains the primary means for the prevention and control of yellow fever. 

WHO continues to support countries in expanding vaccination coverage through routine immunization programs and mass vaccination campaigns to enhance population immunity and reduce the risk of outbreaks.

(...)

Source: World Health Organization, https://www.who.int/emergencies/disease-outbreak-news/item/2025-DON570

____

#USA, Monitoring for Avian #Influenza A(#H5) Virus In #Wastewater (CDC, May 16 '25)


 

{Excerpt}

Time Period: April 27, 2025 - May 03, 2025

-- H5 Detection8 sites (2.0%)

- No Detection402 sites (98.0%)

- No samples in last week67 sites




(...)

Source: US Centers for Disease Control and Prevention, https://www.cdc.gov/bird-flu/h5-monitoring/index.html

____

#Molnupiravir or #nirmatrelvir–ritonavir plus usual care vs usual care alone in patients admitted to #hospital with #COVID19 (RECOVERY)...

Summary

Background

Molnupiravir and nirmatrelvir–ritonavir are oral antivirals that have shown efficacy in preventing disease progression in outpatients with COVID-19. We aimed to evaluate these treatments for patients hospitalised with COVID-19 pneumonia, for whom data on these antivirals are scarce.

Methods

The RECOVERY trial is a randomised, controlled, open-label, adaptive platform trial testing treatments for COVID-19. In this study we report the molnupiravir and nirmatrelvir–ritonavir comparisons from the RECOVERY trial. In each comparison, participants aged 18 years and older were randomly allocated (1:1) to the relevant antiviral (5 days of molnupiravir 800 mg twice daily or 300 mg nirmatrelvir and 100 mg ritonavir twice daily) in addition to usual care, or to usual care alone. The molnupiravir comparison was conducted at 75 hospitals in the UK, two in Nepal, and two in Indonesia; the nirmatrelvir–ritonavir comparison was conducted at 32 hospitals in the UK. Participants could take part in both comparisons. The primary outcome was 28-day mortality, and secondary outcomes were time to discharge alive from hospital and progression to invasive ventilation or death. Analysis was by intention to treat. Both comparisons were stopped because of low recruitment. This study is registered with ISRCTN, 50189673, and ClinicalTrials.gov, NCT04381936.

Findings

From Jan 24, 2022, to May 24, 2023, 923 participants were recruited to the molnupiravir comparison (445 allocated to molnupiravir and 478 to usual care), and from March 31, 2022, to May 24, 2023, 137 participants were recruited to the nirmatrelvir–ritonavir comparison (68 allocated to nirmatrelvir–ritonavir and 69 to usual care). More than three-quarters of participants were vaccinated and had antispike antibodies at randomisation, and more than two-thirds were receiving other SARS-CoV-2 antivirals. In the molnupiravir comparison, 74 (17%) participants allocated to molnupiravir and 79 (17%) allocated to usual care died within 28 days (hazard ratio [HR] 0·93 [95% CI 0·68–1·28], p=0·66). In the nirmatrelvir–ritonavir comparison, 13 (19%) participants allocated to nirmatrelvir–ritonavir and 13 (19%) allocated to usual care died within 28 days (HR 1·02 [0·47–2·23], p=0·96). In neither comparison was there evidence of any difference in the duration of hospitalisation or the proportion of participants progressing to invasive ventilation or death.

Interpretation

Adding molnupiravir or nirmatrelvir–ritonavir to usual care was not associated with improvements in clinical outcomes. However, low recruitment meant a clinically meaningful benefit of treatment could not be ruled out, particularly for nirmatrelvir–ritonavir.

Source: Lancet Infectious Diseases, https://www.thelancet.com/journals/laninf/article/PIIS1473-3099(25)00093-3/fulltext?rss=yes

____

Identification of naturally occurring #drug-resistant #mutations of #SARS-CoV-2 papain-like #protease

Abstract

The SARS-CoV-2 papain-like protease (PLpro) is a cysteine protease that cleaves viral polyproteins and antagonizes the host immune response during viral replication. Jun12682 and PF-07957472 are the first-in-class PLpro inhibitors showing potent in vivo antiviral efficacy in mouse models. In this study, we characterize naturally occurring mutations at residues located at the drug-binding site of Jun12682. The results reveal several PLpro mutants showing significant drug resistance while maintaining comparable enzymatic activity as the wild-type PLpro. The physiological relevance of the identified drug-resistant mutants, including E167G and Q269H, is validated through independent serial viral passage experiments. Molecular dynamics simulations and perturbative free energy calculations show that drug-resistant PLpro mutants weaken hydrogen bonding and π-π stacking interactions. Collectively, this study identifies E167, Y268, and Q269 as drug-resistant hotspots for PLpro inhibitors that bind to the BL2 loop and groove region, which are valuable in informing the design of the next-generation PLpro inhibitors.

Source: Nature Communications, https://www.nature.com/articles/s41467-025-59922-9

____

Thursday, May 15, 2025

Molecular basis of #influenza #ribonucleoprotein complex #assembly and processive #RNA synthesis

Abstract

Influenza viruses replicate and transcribe their genome in the context of a conserved ribonucleoprotein (RNP) complex. By integrating cryo–electron microscopy single-particle analysis and cryo–electron tomography, we define the influenza RNP as a right-handed, antiparallel double helix with the viral RNA encapsidated in the minor groove. Individual nucleoprotein subunits are connected by a flexible tail loop that inserts into a conserved pocket in its neighbor. We visualize the viral polymerase in RNP at different functional states, revealing how it accesses the RNA template while maintaining the double-helical architecture of RNP by strand sliding. Targeting the tail loop binding interface, we identify lead compounds as potential anti-influenza inhibitors. These findings elucidate the molecular determinants underpinning influenza virus replication and highlight a promising target for antiviral development.

Source: Science, https://www.science.org/doi/10.1126/science.adq7597

____

#Statement on the #antigen #composition of #COVID19 #vaccines (#WHO, May 15 '25)


 

Key points

-- Vaccination remains an important public health countermeasure against COVID-19. As per the WHO Director General’s standing recommendations for COVID-19, Member States are recommended to continue to offer COVID-19 vaccination based on the recommendations of the WHO Strategic Advisory Group of Experts on Immunization (SAGE).

-- SARS-CoV-2 continues to undergo sustained evolution since its emergence in humans, with important genetic and antigenic changes in the spike protein.

-- The objective of an update to COVID-19 vaccine antigen composition is to enhance vaccine-induced immune responses to circulating SARS-CoV-2 variants.

-- The WHO Technical Advisory Group on COVID-19 Vaccine Composition (TAG-CO-VAC) advises manufacturers that monovalent JN.1 or KP.2 vaccines remain appropriate vaccine antigens; monovalent LP.8.1 is a suitable alternative vaccine antigen.

-- In accordance with WHO SAGE policy, vaccination should not be delayed in anticipation of access to vaccines with an updated composition.


The WHO Technical Advisory Group on COVID-19 Vaccine Composition (TAG-CO-VAC) continues to closely monitor the genetic and antigenic evolution of SARS-CoV-2 variants, immune responses to SARS-CoV-2 infection and COVID-19 vaccination, and the performance of COVID-19 vaccines against circulating variants. 

Based on these evaluations, WHO advises vaccine manufacturers and regulatory authorities on the implications for future updates to COVID-19 vaccine antigen composition. 

In April 2024, the TAG-CO-VAC recommended the use of a monovalent JN.1 lineage vaccine antigen as one approach to induce enhanced neutralizing antibody responses to JN.1 and its descendent lineages. 

In December 2024, the TAG-CO-VAC advised retaining the use of a monovalent JN.1 lineage vaccine antigen. 

Multiple manufacturers (using mRNA, recombinant protein-based, and adenovirus-vectored platforms) have updated COVID-19 vaccine antigen composition to monovalent JN.1 lineage formulations (JN.1 or KP.2). 

Several of these vaccines have been approved for use by regulatory authorities and introduced into vaccination programmes in some countries during the second half of 2024. Previous statements from the TAG-CO-VAC can be found on the WHO website.

The TAG-CO-VAC reconvened on 6-7 May 2025 to review: 

- the genetic and antigenic evolution of SARS-CoV-2; 

- immune responses to SARS-CoV-2 infection and/or COVID-19 vaccination; 

- the performance of currently approved vaccines against circulating SARS-CoV-2 variants; and 

- the implications for COVID-19 vaccine antigen composition.


Evidence reviewed

The published and unpublished evidence reviewed by the TAG-CO-VAC included

(1) SARS-CoV-2 genetic evolution with additional support from the WHO Technical Advisory Group on SARS-CoV-2 Virus Evolution (TAG-VE); 

(2) Antigenic characterization of previous and emerging SARS-CoV-2 variants using virus neutralization tests with animal antisera and further analysis of antigenic relationships using antigenic cartography; 

(3) Immunogenicity data on the breadth of neutralizing antibody responses elicited by currently approved vaccine antigens against circulating SARS-CoV-2 variants using animal and human sera; 

(4) Preliminary immunogenicity data on immune responses following infection with circulating SARS-CoV-2 variants; 

(5) Available vaccine effectiveness (VE) estimates of currently approved vaccines during periods of JN.1 lineage circulation; and 

(6) Preliminary non-clinical and clinical immunogenicity data on the performance of candidate vaccines with updated antigens shared confidentially by vaccine manufacturers with TAG-CO-VAC. 

Further details on the data reviewed by the TAG-CO-VAC can be found in the accompanying data annex. Confidential data reviewed by the TAG-CO-VAC are not shown.


Summary of available evidence

There are persistent and increasing gaps in the reporting of cases, hospitalizations and deaths, from WHO Member States, making epidemiological trends difficult to infer. 

Nonetheless, in 2025, SARS-CoV-2 continues to circulate globally, causing severe disease, post COVID-19 condition, and death. 

The majority of COVID-19 deaths continue to occur in individuals aged 65 years and older and those with coexisting conditions. 

Some countries have reported an increase in incidence of COVID-19-related hospitalizations and deaths among children under 1 year of age, as compared to young adults, although this group still accounts for a small proportion of total COVID-19 hospitalizations and deaths.

As of May 2025, currently circulating SARS-CoV-2 variants are derived from JN.1

The weekly proportion of Variant Under Monitoring (VUM) LP.8.1 among all SARS-CoV-2 sequences submitted to GISAID continues to increase. 

The weekly proportion of JN.1 (Variant of Interest, VOI) is slowly increasing, largely due to increases in LF.7 and its descendent variants, while all other VUMs (KP.3, KP.3.1.1, XEC, and LB.1) are declining. 

Several JN.1 derived variants have independently evolved changes in the spike protein at epitopes known to be targeted by neutralizing antibodies.

Published and unpublished data using antisera from naĂ¯ve hamsters infected with JN.1, KP.2, KP.3.1.1, XEC or LP.8.1 or mice immunized with mRNA vaccine antigens JN.1, KP.2 or KP.3 showed that JN.1, KP.2, KP.3.1.1, XEC, and LP.8.1 are antigenically closely related to each other (approximately 1 antigenic unit in cartographic analysis, which corresponds to a two-fold-difference in neutralization).

In published and unpublished data from humans, vaccination with monovalent JN.1 or KP.2 antigens significantly increased neutralizing antibody titers against all JN.1 descendent lineages tested:

-- Analysis of pre- and post-vaccination sera from JN.1 lineage (i.e. JN.1 or KP.2) immunized individuals demonstrated significant rises in neutralization of JN.1 and its descendent lineages, including KP.3.1.1, XEC, LF.7.2.1, and LP.8.1.

-- Neutralization titers against LP.8.1 were generally modestly lower (2-fold reduction) than those against the homologous JN.1 or KP.2 antigen.

Contemporary vaccine effectiveness (VE) estimates are relative (rVE), rather than absolute (comparing vaccinated to unvaccinated individuals), and demonstrate the added or incremental protection of recent vaccination over and above pre-existing infection- and vaccine-derived immunity. 

Monovalent JN.1 or KP.2 COVID-19 vaccines were introduced into some vaccination programmes in the second half of 2024. There are only a few studies estimating rVE for the monovalent JN.1 or KP.2 mRNA COVID-19 vaccines during periods of JN.1 descendent lineage circulation. 

Both vaccines demonstrated additional protection—relative to pre-existing immunity—against symptomatic and severe COVID-19 during the first three to four months after vaccination.

Data shared confidentially with the TAG-CO-VAC by vaccine manufacturers showed that:

-- Immunization of naĂ¯ve mice, as well as of mice previously immunized with SARS-CoV-2 variants, with monovalent JN.1 or KP.2 vaccines resulted in high neutralizing antibody titers against JN.1 and its derivatives including KP.2, KP.3.1.1, XEC, LP.8.1, and LF.7.2. However, neutralization titers against LP.8.1 were typically lower than those against the homologous immunizing antigen.

-- Immunization of naĂ¯ve mice, as well as of mice previously immunized with SARS-CoV-2 variants, with monovalent LP.8.1 vaccine candidates elicited high neutralizing antibody titers against the homologous antigen. Cross-neutralizing antibody titers elicited against other JN.1 lineage variants including JN.1, KP.2, KP.3, KP.3.1.1, XEC, and LF.7.2 were similar or modestly higher than those elicited by JN.1 or KP.2 antigens.

-- In humans, vaccination with monovalent JN.1 or KP.2 antigens resulted in robust neutralizing antibody responses to JN.1 and descendent variants, including KP.3.1.1, XEC, LP.8.1, and LF.7.2.

As in non-clinical data, analysis of pre- and post-vaccination sera from JN.1 or KP.2 immunized individuals showed some variation in neutralizing antibody titers against LP.8.1 and LF.7.2 across different studies. In most instances, they were similar or lower than those against the homologous JN.1 or KP.2 antigens.

Overall, the currently approved monovalent JN.1 or KP.2 vaccines continue to elicit broadly cross-reactive immune responses to circulating JN.1-derived variants

LP.8.1 as a vaccine antigen offers similar or modestly increased cross-reactive antibody responses to circulating JN.1-derived variants, as compared to monovalent JN.1 or KP.2 vaccines. Mathematical modeling indicates that an increase in neutralizing antibody titers may translate into an improvement in vaccine effectiveness and duration of protection.

The TAG-CO-VAC acknowledges several limitations of available data: 

-- There are persistent and increasing gaps in the reporting of cases, hospitalizations and deaths, from WHO Member States, as well as in genetic/genomic surveillance of SARS-CoV-2 globally, including low numbers of samples sequenced and limited geographic diversity. The TAG-CO-VAC strongly supports the ongoing work of the WHO Coronavirus Network (CoViNet) and the Global Influenza Surveillance and Response System (GISRS) to address this information gap.

-- The timing, specific mutations and antigenic characteristics of emerging and future variants are difficult to predict, and the potential public health impact of these variants remain unknown. There are JN.1-derived variants and long branch saltation variants that are currently detected in low or very low proportions, and which will continue to be monitored and/or characterized. The TAG-CO-VAC strongly supports the ongoing work of the TAG-VE. 

-- Although neutralizing antibody titers have been shown to be important correlates of protection from SARS-CoV-2 infection and of estimates of vaccine effectiveness, there are multiple components of immune protection elicited by infection and/or vaccination. Data on the immune responses following JN.1 descendent lineage infection or monovalent JN.1 or KP.2 vaccination are largely restricted to neutralizing antibodies. Data and interpretation of other aspects of the immune response, including cellular immunity, are limited. 

-- Immunogenicity data against currently circulating SARS-CoV-2 variants are not available for all COVID-19 vaccines. 

-- Estimates of rVE against recently circulating JN.1 variants are limited in terms of the number of studies, geographic diversity, vaccine platforms evaluated, populations assessed, duration of follow-up, and contemporary comparisons of vaccines with different antigen composition.


Recommendations for COVID-19 vaccine antigen composition

-- Monovalent JN.1 (NextStrain: 24A, GenBank: PP298019, GISAID: EPI_ISL_18872762) or KP.2 vaccines remain appropriate for ongoing use; monovalent LP.8.1 (NextStrain: 25A; GenBank: PV074550.1; GISAID: EPI_ISL_19467828) is a suitable alternative vaccine antigen.

Other approaches that demonstrate broad and robust neutralizing antibody responses or efficacy against currently circulating JN.1 descendent lineage variants could also be considered.

As per the WHO Director General’s standing recommendations for COVID-19, Member States are recommended to continue to offer COVID-19 vaccination based on the recommendations of the WHO SAGE. Vaccination should not be delayed in anticipation of access to vaccines with an updated composition.


Further data requested

Given the limitations of the evidence upon which the recommendations above are derived and the anticipated continued evolution of the virus, the TAG-CO-VAC strongly encourages generation of the following data (in addition to the types of data outlined in March 2025): 

-- Immune responses and clinical endpoints (i.e. VE and/or comparator rates of infection and severe disease) in varied human populations who receive currently approved COVID-19 vaccines against emerging SARS-CoV-2 variants, across different vaccine platforms.

-- Strengthened epidemiological and virological surveillance, as per the Standing Recommendations for COVID-19 in accordance with the International Health Regulations (2005), to determine if emerging variants are antigenically distinct and able to displace circulating variants.

-- Strengthened epidemiological surveillance to characterize disease severity in immunologically naĂ¯ve and/ or immature individuals (i.e. birth cohorts).

-- Clinical evaluation of relevant new vaccine antigens derived from more recent SARS-CoV-2 variants.

As previously stated, the TAG-CO-VAC continues to encourage the further development of vaccines that may improve protection against infection and reduce transmission of SARS-CoV-2.

The TAG-CO-VAC will continue to closely monitor the genetic and antigenic evolution of SARS-CoV-2 variants, immune responses to SARS-CoV-2 infection and COVID-19 vaccination, and the performance of COVID-19 vaccines against circulating variants. The TAG-CO-VAC will also continue to reconvene every six months, or as needed, to evaluate the implications for COVID-19 vaccine antigen composition. At each meeting, recommendations to either maintain current vaccine composition or to consider updates will be issued. Prior to each meeting, the TAG-CO-VAC will publish an update to the statement on the types of data requested to inform COVID-19 vaccine antigen composition deliberations.

Source: World Health Organization, https://www.who.int/news/item/15-05-2025-statement-on-the-antigen-composition-of-covid-19-vaccines

_____

My New Space

Most Popular Posts