Thursday, February 20, 2025

#Global #production #capacity of seasonal and #pandemic #influenza #vaccines in 2023

Abstract

Introduction

Vaccination is a critical part of the response to an influenza pandemic. Future influenza pandemics will likely leverage existing production processes and manufacturing facilities for seasonal influenza to make pandemic vaccines. Therefore, pandemic influenza vaccine response is heavily dependent on seasonal influenza vaccine production capacity.

Methods

WHO monitors global vaccine production to inform pandemic preparedness by regularly surveying influenza vaccine manufacturers to estimate both seasonal and potential pandemic vaccine production capacity overall and by region, vaccine type, and manufacturing process. The last survey estimates were for 2019; here, we report updated estimates based on data from the 2023 survey and compare to estimates from previous surveys.

Results

Our analysis estimates that annual seasonal influenza vaccine production capacity has remained relatively stable since 2019 at 1.53 billion doses and pandemic vaccine capacity at 4.13 and 8.26 billion doses for moderate and best case scenarios, respectively. Over 80 % of seasonal and pandemic vaccine production capacity relies on embryonated eggs, and inactivated influenza virus vaccines comprise the majority of vaccine supply. There is influenza vaccine manufacturing capacity in all WHO regions, except for the African Region, though influenza vaccine production is concentrated in high and upper-middle income countries. The ability to achieve maximum production capacity could be hindered by access to eggs and other ancillary supplies.

Conclusions

While influenza vaccine production capacity has been sustained since 2019, significant gaps persist in its distribution, especially in low and lower-middle income countries, and most notably in the African region. This imbalance in production could result in unequal access to vaccines in the event of a pandemic. Strengthening local vaccine manufacturing, promoting seasonal vaccination programmes, and investing in research and development of next-generation influenza vaccines or improved production platforms are essential to improve pandemic preparedness, sustain the influenza vaccine market, and enable more robust local responses.

_____

#Bat-infecting #merbecovirus HKU5-CoV #lineage 2 can use #human #ACE2 as a cell entry receptor

Highlights

 A distinct HKU5 coronavirus lineage (HKU5-CoV-2) is discovered in bats

• Bat HKU5-CoV-2 uses human ACE2 receptor and ACE2 orthologs from multiple species

 Bat HKU5-CoV-2 RBD engages human ACE2 with a distinct binding mode from other CoVs

• Bat HKU5-CoV-2 was isolated and infect human-ACE2-expressing cells


Summary

Merbecoviruses comprise four viral species with remarkable genetic diversity: MERS-related coronavirus, Tylonycterisbat coronavirus HKU4, Pipistrellusbat coronavirus HKU5, and Hedgehog coronavirus 1. However, the potential human spillover risk of animal merbecoviruses remains to be investigated. Here, we reported the discovery of HKU5-CoV lineage 2 (HKU5-CoV-2) in bats that efficiently utilize human angiotensin-converting enzyme 2 (ACE2) as a functional receptor and exhibits a broad host tropism. Cryo-EM analysis of HKU5-CoV-2 receptor-binding domain (RBD) and human ACE2 complex revealed an entirely distinct binding mode compared with other ACE2-utilizing merbecoviruses with RBD footprint largely shared with ACE2-using sarbecoviruses and NL63. Structural and functional analyses indicate that HKU5-CoV-2 has a better adaptation to human ACE2 than lineage 1 HKU5-CoV. Authentic HKU5-CoV-2 infected human ACE2-expressing cell lines and human respiratory and enteric organoids. This study reveals a distinct lineage of HKU5-CoVs in bats that efficiently use human ACE2 and underscores their potential zoonotic risk.

Source: Cell, https://www.cell.com/cell/abstract/S0092-8674(25)00144-8?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867425001448%3Fshowall%3Dtrue

____

Wednesday, February 19, 2025

#USA, #Situation #summary of confirmed and probable #H5N1 #influenza virus #human cases since 2024 (as of Feb. 19 '25): One New Case in #Wyoming



{Excerpt}

[Confirmed Cases: State, Exposure Source: Dairy Herds, Poultry Farms and Culling Operations, Other Animal Exposure, Unknown, State Total]

-- National, 41, 23, 2, 3, 69 {+1}

1) California, 36, 0, 0, 2, 38

2) Colorado, 1, 9, 0, 0, 10

3) Iowa, 0, 1, 0, 0, 1, 1

4) Louisiana, 0, 0, 1,0 , 1

5) Michigan, 2, 0, 0, 0, 2

6) Missouri, 0, 0, 0, 1, 1

7) Nevada, 1, 0, 0, 0, 1

8) Oregon, 0, 1, 0, 0, 1

9) Texas, 1, 0, 0, 0, 1

10) Washington, 0, 11, 0, 0, 11

11) Wisconsin, 0, 1, 0, 0, 1

12) Wyoming, 0, 0, 1, 0, 1 {+1} 


[Probable Cases: State, Exposure Source: Dairy Herds, Poultry Farms and Culling Operations, Other Animal Exposure, Unknown, State Total]

-- National, 1, 6, 0, 1, 8

- Arizona, 0, 2, 0, 0, 2

-- California, 1, 0, 0, 0, 1

-- Delaware, 0, 0, 0, 1, 1

-- Ohio, 0, 1, 0, 0, 1

-- Washington, 0, 3, 0, 0, 3

NOTE: One additional case was previously detected in a poultry worker in Colorado in 2022. Louisiana reported the first H5 bird flu death in the U.S.

{*} Exposure Associated with Commercial Agriculture and Related Operations

{†} Exposure was related to other animals such as backyard flocks, wild birds, or other mammals

{‡} Exposure source was not able to be identified

(...)

Source: US Centers for Disease Control and Prevention, https://www.cdc.gov/bird-flu/situation-summary/?CDC_AAref_Val=https%3A%2F%2Fwww.cdc.gov%2Fflu%2Favianflu%2Favian-flu-summary.htm&cove-tab=1

____



#Portugal - #Influenza A #H5N1 viruses of high pathogenicity (Inf. with) (non-poultry including wild birds) (2017-) - Immediate notification

A Great Cormorant in Leiria Region. 

Backyard birds in Aveiro Region.

Source: WOAH, https://wahis.woah.org/#/in-review/6230

____

#Belgium - High pathogenicity avian #influenza #H5N1 viruses (#poultry) (Inf. with) - Immediate notification

 A poultry farm in Vlaanderen Region.

Source: WOAH, https://wahis.woah.org/#/in-review/6280

____

#Greece - #Influenza A #H5N1 viruses of high pathogenicity (Inf. with) (non-poultry including wild birds) (2017-) - Immediate notification

Wild Dalmatian Pelicans in Florina Region.

Source: WOAH, https://wahis.woah.org/#/in-review/6281?reportId=172377&fromPage=event-dashboard-url

____

#Nepal - High pathogenicity avian #influenza #H5N1 viruses (#poultry) (Inf. with) - Immediate notification

 Ducks and commerical poultry of various age groups.

Source: WOAH, https://wahis.woah.org/#/in-review/6278?reportId=172354&fromPage=event-dashboard-url

____

#Niger - High pathogenicity avian #influenza #H5N1 viruses (#poultry) (Inf. with) - Immediate notification

Backyard poultry in Niamey Region.

Source: WOAH, https://wahis.woah.org/#/in-review/6259

____

Tuesday, February 18, 2025

#Neuraminidase #reassortment and #oseltamivir #resistance in clade 2.3.4.4b A(#H5N1) viruses circulating among #Canadian #poultry, 2024

Abstract

We report the detection of a clade 2.3.4.4b A(H5N1) reassortant virus with a neuraminidase surface protein derived from a North American lineage low-pathogenic avian influenza virus. This virus caused a widespread and ongoing outbreak across 45 poultry farms in British Columbia, Canada. Isolates from 8 farms reveal a mutation in the neuraminidase protein (H275Y) that is exceptionally rare among clade 2.3.4.4b viruses (present in 0.045% of publicly available clade 2.3.4.4b isolates). NA-H275Y is a well-known marker of resistance to the neuraminidase inhibitor oseltamivir. We demonstrate that this substitution maintains its resistance phenotype on the genetic background of H5N1 clade 2.3.4.4b viruses.

Source: Emerging Microbes and Infections, https://www.tandfonline.com/doi/full/10.1080/22221751.2025.2469643

____

Two additional Avian #Influenza #H9N2 #Human Cases in #China (HK CHP)

 {Excerpt}

{Avian Influenza H9N2 Human Cases in China}

-- Mainland China: 2 cases (0 death) 

- Avian influenza A(H9N2): 

* Guangdong Province

- A 72-year-old woman with onset on December 26, 2024. 

- A 56-year-old woman with onset on January 20, 2025. 

(...)

Source: Centre for Health Protection, Hong Kong PRC SAR, https://www.chp.gov.hk/files/pdf/2025_avian_influenza_report_vol21_wk07.pdf

____

#Argentina - #Influenza A #H5 viruses of high pathogenicity (Inf. with) (non-poultry including wild birds) (2017-) - Immediate notification

National Service of Agri-Food Health and Quality (SENASA) received a notification concerning a high mortality of birds and signs consistent with high pathogenicity avian influenza (HPAI) in a backyard. The suspicion was immediately addressed and samples were taken for analysis. The samples tested positive for HPAI H5. The affected species are chickens, ducks and turkeys. The affected premises are adjacent to a body of water, so contact with wild birds is presumed. Stamping out, sanitary burial, cleaning and disinfection of all the birds in the premises will be carried out. We will update the quantitative data in subsequent follow-up reports.

Source: WOAH, https://wahis.woah.org/#/in-review/6272

_____

#Cambodia - #Influenza A #H5N1 viruses of high pathogenicity (Inf. with) (non-poultry including wild birds) (2017-) - Immediate notification

Avian influenza was found in sick and dead wild birds along the shores of a lake in a bird sanctuary.

Location: Theay commune, Ba Phnum district, Prey Veng province.

Source: WOAH, https://wahis.woah.org/#/in-review/6273

____

#Canada - High pathogenicity avian #influenza #H5N5 viruses (#poultry) (Inf. with) - Immediate notification

On January 24, 2025, the Canadian Food Inspection Agency (CFIA) was notified of mortality in a non-commercial backyard layer poultry farm in Newfoundland and Labrador. The CFIA National Centre for Foreign Animal Disease has confirmed on February 12, 2025 that the virus was H5N5. The HA of the H5 virus from the samples belongs to Eurasian Gs/GD lineage HPAI H5N1 (2.3.4.4b) with cleavage site motif of “PLREKRRKR/GLF”, compatible with HPAI viruses. The sample contained AI virus similar to European like - H5N5 (2023) viruses which came to Canada via the Atlantic flyway. The viruses contained wholly Eurasian H5N5 genome segments. The CFIA has immediately quarantined the IP and is implementing strict movement controls and a stamping out policy. Primary control zone (PCZ) has been put in place around the IP. Surveillance is ongoing in the affected areas. WOAH data on poultry and non-poultry can be visualized and extracted on the AI dashboard in domestic birds available at https://cahss.ca/cahss-networks/poultry-new (select poultry categories to show data related to HPAI poultry events 4294, 5229, 6003, and 6267). Wildlife surveillance as well as the Canadian Notifiable Avian Influenza Surveillance System (CanNAISS) activities for poultry are ongoing in Canada.

Source: WOAH, https://wahis.woah.org/#/in-review/6267

____

#TĂ¼rkiye (Rep. of) - #Influenza A #H5N1 viruses of high pathogenicity (Inf. with) (non-poultry including wild birds) (2017-) - Immediate notification

A total of 390 birds belonging to various individual backyard owners in a village. The birds included various species such as chickens, geese, and ducks. There are no commercial poultry operations within the village or the surrounding 10km surveillance zone.

In Hatay Region.

Source: WOAH, https://wahis.woah.org/#/in-review/6270

____

North #American-Origin #Influenza A (#H10) viruses in Eurasian Wild #Birds (2022–2024): Implications for the Emergence of Human #H10N5 Virus

Abstract

During our surveillance of avian influenza viruses (AIVs) in wild birds across China, H10Nx viruses were isolated from diverse migratory flyways between 2022 and 2024. We identified one wild-bird H10N5 strain that shared a common ancestor with the human H10N5 virus in multiple gene segments. Phylogenetic and molecular dating revealed the origin and evolution of H10N5, highlighting the need for continued monitoring.

Source: Emerging Microbes and Infections, https://www.tandfonline.com/doi/full/10.1080/22221751.2025.2465308

____

#Bosnia and #Herzegovina - #Influenza A #H5N1 viruses of high pathogenicity (Inf. with) (non-poultry including wild birds) (2017-) - Immediate notification

Four Mute Swans in Federacija Bosna i Hercegovina. 

Source: WOAH, https://wahis.woah.org/#/in-review/6275?reportId=172294&fromPage=event-dashboard-url

_____

Monday, February 17, 2025

Combing the haystacks: The #search for highly pathogenic avian #influenza virus using a combined #clinical and research-developed #testing strategy

Abstract

Background

Highly pathogenic H5 avian influenza A has caused sporadic human infections, increasing the risk for potential human–to–human spread. In 2024, the U.S. experienced outbreaks among poultry and cattle, prompting enhanced surveillance

Objective

To evaluate an H5 testing algorithm in subjects with respiratory symptoms presenting for routine care during low influenza A virus circulation. 

Design

Observational study using clinical– and research–developed nucleic acid amplification tests (NAATs) and pooled screening methods. 

Setting

Academic medical center in Boston, MA. 

Participants

5,400 symptomatic individuals contributing 6,935 respiratory specimens from June 23 to August 28, 2024. 

Measurements

Specimens underwent initial respiratory pathogen testing per clinical protocols, which did not routinely include influenza due to low summer–month prevalence. Influenza A–positive specimens were subtyped using a clinical assay for H5 assessment. SARS–CoV–2–negative specimens not tested for influenza were screened in pooled batches. Positive pools were deconvoluted to individual specimens and screened for H5 using quantitative polymerase chain reaction. 

Results

Influenza A was detected in 40 of 6,935 specimens (0.6%), comprising 35 of 5,400 unique subjects (0.7%). No H5 infections were identified. Of the 35 influenza–positive individuals, 10 cases (29%) were found through research–specific screening of SARS–CoV–2–negative specimens. No deaths attributed to influenza were recorded. 

Limitations

Single center design, convenience sampling, absence of ocular specimens, and minimal sampling in high–risk areas may limit generalizability. 

Conclusion

Expanded influenza testing using pooled NAATs successfully identified low–prevalence influenza A and ruled out H5 in this cohort. These data support targeted influenza screening to enhance surveillance for emerging subtypes rather than a broad–based clinical testing strategy for influenza A testing.

Source: MedRxIV, https://www.medrxiv.org/content/10.1101/2025.02.12.25321810v1

_____

A two-step #mechanism for RIG-I #activation by #influenza virus mini viral #RNAs

Abstract

Influenza A virus (IAV) non-canonical replication products can be bound by host pathogen sensors, such as retinoic acid-inducible gene I (RIG-I). However, innate immune activation is infrequent in cell culture infection, in particular by adapted strains. Moreover, it is not understood why non-canonical IAV RNAs activate RIG-I in a sequence- or RNA structure-dependent manner. We therefore hypothesized that multiple errors need to occur before influenza virus RNA synthesis activates innate immune signaling. To test this idea, we investigated whether RIG-I activation is stimulated by the non-canonical or aberrant transcription of mini viral RNAs (mvRNA), a <125 nt long RNA that is overexpressed in pandemic and highly pathogenic IAV infections. Using mvRNA sequences identified in tissue culture and ferret infections, we find that mvRNAs can cause non-canonical transcription termination through a truncated 5ʹ polyadenylation signal or a 5ʹ transient RNA structure that interrupts polyadenylation. The resulting capped complementary RNAs (ccRNA) can stimulate the release of a template mvRNA in vitro. Finally, we find that both mvRNA and ccRNA sequences can be bound by RIG-I in cell culture and that blocking mvRNA transcription with baloxavir reduces IFN promoter activity. Overall, our findings indicate that sequential rounds of non-canonical or aberrant viral replication and transcription are needed before mvRNAs trigger innate immune signaling in a sequence-dependent manner.

Source: BioRxIV, https://www.biorxiv.org/content/10.1101/2025.01.04.630666v2

_____

Sunday, February 16, 2025

The Adoration of the Magi, William Morris (1890)

 


Public Domain.

Source: WikiArt, https://www.wikiart.org/en/william-morris/the-adoration-of-the-magi-1890

_____

#Coronavirus Disease Research #References (by AMEDEO, Feb. 16 '25)

 


    Am J Obstet Gynecol

  1. DOMGUE JF, Chandra M, Yu R, Shete S, et al
    Adherence to cervical cancer screening among sexual and racial/ethnic minorities during the covid-19 pandemic in the United States.
    Am J Obstet Gynecol. 2025 Feb 7:S0002-9378(25)00088.
    PubMed        


    Antiviral Res

  2. SCHREIBER A, Ludwig S
    Host-targeted antivirals against SARS-CoV-2 in clinical development - Prospect or disappointment?
    Antiviral Res. 2025;235:106101.
    PubMed         Abstract available


    Infect Control Hosp Epidemiol

  3. TORRES C, Lyden E, Gillett G, Rupp ME, et al
    Dropping the urine culture: sustained CAUTI reduction using a UTI order panel.
    Infect Control Hosp Epidemiol. 2025 Feb 13:1-7. doi: 10.1017/ice.2025.
    PubMed         Abstract available

  4. SAPIANO MRP, Dudeck MA, Patel PR, Binder AM, et al
    Patient safety as a measure of resilience in US hospitals: central line-associated bloodstream infections, July 2020 through June 2021.
    Infect Control Hosp Epidemiol. 2025 Feb 14:1-7. doi: 10.1017/ice.2024.
    PubMed         Abstract available


    Int J Infect Dis

  5. ZAMPIERI F, Michieletto F, Zanatta A
    Rise and fall of the Myth of the Good Pathogen in Evolutionary Biology and Medicine.
    Int J Infect Dis. 2025 Feb 5:107836. doi: 10.1016/j.ijid.2025.107836.
    PubMed         Abstract available

  6. LESLIE A, Chapman SA, Tessier KM, Tignanelli C, et al
    Beyond the Guidelines: Original Research on Real-World Outcomes of Anticoagulation and Corticosteroid in COVID-19.
    Int J Infect Dis. 2025 Feb 8:107834. doi: 10.1016/j.ijid.2025.107834.
    PubMed         Abstract available

  7. SHINZATO A, Hibiya K, Nishiyama N, Ikemiyagi N, et al
    Unseasonal respiratory syncytial virus epidemics during the COVID-19 pandemic: relationship between climatic factors and epidemic strain switching.
    Int J Infect Dis. 2025 Feb 8:107833. doi: 10.1016/j.ijid.2025.107833.
    PubMed         Abstract available


    Intensive Care Med

  8. ROWLAND A, Boulanger C, Dalton L
    Supporting the bereaved child in the adult ICU: a narrative review.
    Intensive Care Med. 2025 Feb 12. doi: 10.1007/s00134-025-07813.
    PubMed         Abstract available


    J Infect

  9. NOBLE C, McDonald E, Nicholson S, Biering-Sorensen S, et al
    Characterising the SARS-CoV-2 nucleocapsid (N) protein antibody response.
    J Infect. 2025 Feb 6:106436. doi: 10.1016/j.jinf.2025.106436.
    PubMed         Abstract available


    J Med Virol

  10. HIKMAT H, Le Targa L, Boschi C, Py J, et al
    Five-Year (2017-2022) Evolutionary Dynamics of Human Coronavirus HKU1 in Southern France With Emergence of Viruses Harboring Spike H512R Substitution.
    J Med Virol. 2025;97:e70217.
    PubMed         Abstract available

  11. MAO T, Zhang P, Jiang S, Li D, et al
    Oral Ad5 Vector-Based SARS-CoV-2 Vaccine Effectively Induces Mucosal and Systemic Immune Responses in BALB/c Mice.
    J Med Virol. 2025;97:e70236.
    PubMed         Abstract available

  12. KALO E, Basyouni Z, Katz GM, Karkvandi V, et al
    Real-World Effectiveness of Sotrovimab in Patients Infected With SARS-CoV-2 Omicron Subvariant BA.2 in Western Sydney, Australia.
    J Med Virol. 2025;97:e70235.
    PubMed         Abstract available

  13. BERGNA A, Lai A, Sagradi F, Menzo S, et al
    Genomic Epidemiology of the Main SARS-CoV-2 Variants Circulating in Italy During the Omicron Era.
    J Med Virol. 2025;97:e70215.
    PubMed         Abstract available

  14. ZHAO M, Lei L, Jiang Y, Tian Y, et al
    Unveiling the Threat of Disease X: Preparing for the Next Global Pandemic.
    J Med Virol. 2025;97:e70227.
    PubMed         Abstract available

  15. YE J, Zhang R, Zhou J, Xu T, et al
    Systematic Reevaluation of Repurposed Drugs Against the Main Protease of SARS-CoV-2 via Combined Experiments.
    J Med Virol. 2025;97:e70229.
    PubMed         Abstract available

  16. MUKHOPADHYAY R, Lambisia AW, Hoang JP, Ravenhill BJ, et al
    Adenovirus-Specific T Cells in Adults Are Frequent, Cross-Reactive to Common Childhood Adenovirus Infections and Boosted by Adenovirus-Vectored Vaccines.
    J Med Virol. 2025;97:e70222.
    PubMed         Abstract available

  17. TORRES AR, Gaio V, Melo A, Lanca M, et al
    RSV-Bacterial Co-Infection Is Associated With Increased Illness Severity in Hospitalized Children - Results From a Prospective Sentinel Surveillance Study.
    J Med Virol. 2025;97:e70209.
    PubMed         Abstract available

  18. WANG S, Sun J, Hu Y, Zhang W, et al
    Clinical and Multiorgan Proteomics Characteristics of the Diverse Fatal Phase in Super Elderly Patients With SARS-CoV-2 Infection: A Descriptive Study.
    J Med Virol. 2025;97:e70207.
    PubMed         Abstract available


    J Virol

  19. CAO X, Liu Y, Tong W, Qin W, et al
    POLM inhibits porcine epidemic diarrhea virus replication by degrading multiple viral structural proteins.
    J Virol. 2025 Feb 10:e0227824. doi: 10.1128/jvi.02278.
    PubMed         Abstract available

  20. FURUSAWA Y, Kiso M, Uraki R, Sakai-Tagawa Y, et al
    Amino acid substitutions in NSP6 and NSP13 of SARS-CoV-2 contribute to superior virus growth at low temperatures.
    J Virol. 2025 Feb 12:e0221724. doi: 10.1128/jvi.02217.
    PubMed         Abstract available

  21. ZHU H, Lou J, Yang Z, Bai J, et al
    STT3B promotes porcine epidemic diarrhea virus replication by regulating N-glycosylation of PEDV S protein.
    J Virol. 2025 Feb 13:e0001825. doi: 10.1128/jvi.00018.
    PubMed         Abstract available

  22. MA R, Zhang X, Li R, Dong X, et al
    PLSCR1 suppresses SARS-CoV-2 infection by downregulating cell surface ACE2.
    J Virol. 2025 Feb 13:e0208524. doi: 10.1128/jvi.02085.
    PubMed         Abstract available


    Lancet

  23. WONG WC, Lin V, Fang X, Kidd M, et al
    The Lancet Commission on Transforming Primary Health Care in the Post-COVID-19 Era.
    Lancet. 2025 Feb 10:S0140-6736(25)00198-9. doi: 10.1016/S0140-6736(25)00198.
    PubMed        


    Lancet Infect Dis

  24. PROAL AD, Aleman S, Bomsel M, Brodin P, et al
    Targeting the SARS-CoV-2 reservoir in long COVID.
    Lancet Infect Dis. 2025 Feb 10:S1473-3099(24)00769.
    PubMed         Abstract available

  25. CHEN L, Kaku Y, Okumura K, Uriu K, et al
    Virological characteristics of the SARS-CoV-2 LP.8.1 variant.
    Lancet Infect Dis. 2025 Feb 10:S1473-3099(25)00079.
    PubMed        


    N Engl J Med

  26. FURIE RA, Rovin BH, Garg JP, Santiago MB, et al
    Efficacy and Safety of Obinutuzumab in Active Lupus Nephritis.
    N Engl J Med. 2025 Feb 7. doi: 10.1056/NEJMoa2410965.
    PubMed         Abstract available

  27. WANG JJ, Warkentin TE, Schonborn L, Wheeler MB, et al
    VITT-like Monoclonal Gammopathy of Thrombotic Significance.
    N Engl J Med. 2025 Feb 12. doi: 10.1056/NEJMoa2415930.
    PubMed         Abstract available

My New Space

Most Popular Posts