Saturday, March 8, 2025

#Coronavirus Disease Research #References (by AMEDEO, March 8 '25)

 


    Antiviral Res

  1. PADEY B, Droillard C, Duliere V, Fouret J, et al
    Host-targeted repurposed diltiazem enhances the antiviral activity of direct acting antivirals against Influenza A virus and SARS-CoV-2.
    Antiviral Res. 2025 Mar 4:106138. doi: 10.1016/j.antiviral.2025.106138.
    PubMed         Abstract available


    Clin Infect Dis

  2. BULLOCK A, Dalton AF, Stockwell MS, McLaren SH, et al
    Ongoing Symptoms After Acute SARS-CoV-2 or Influenza Infection in a Case-Ascertained Household Transmission Study: 7 US Sites, 2021-2023.
    Clin Infect Dis. 2025 Feb 26:ciaf026. doi: 10.1093.
    PubMed         Abstract available

  3. SWARTWOOD NA, Cohen T, Marks SM, Hill AN, et al
    Effects of the COVID-19 pandemic on TB outcomes in the United States: a Bayesian analysis.
    Clin Infect Dis. 2025 Feb 27:ciaf092. doi: 10.1093.
    PubMed         Abstract available


    Emerg Infect Dis

  4. BI K, Bandekar SR, Bouchnita A, Fox SJ, et al
    Annual Hospitalizations for COVID-19, Influenza, and Respiratory Syncytial Virus, United States, 2023-2024.
    Emerg Infect Dis. 2025;31:636-638.
    PubMed         Abstract available

  5. AGUILAR-BULTET L, Gomez-Sanz E, Garcia-Martin AB, Hug MA, et al
    Extended-Spectrum beta-Lactamase-Producing Enterobacterales in Municipal Wastewater Collections, Switzerland, 2019-2023.
    Emerg Infect Dis. 2025;31:574-578.
    PubMed         Abstract available

  6. LEBER AL, Embry T, Everhart K, Taveras J, et al
    Macrolide-Resistant Mycoplasma pneumoniae Infections among Children after COVID-19 Pandemic, Ohio, USA.
    Emerg Infect Dis. 2025;31:555-558.
    PubMed         Abstract available


    Graefes Arch Clin Exp Ophthalmol

  7. KEYE P, Evers C, Glaser T, Braun P, et al
    Impact of the COVID-19 pandemic on glaucoma surgery in German hospitals.
    Graefes Arch Clin Exp Ophthalmol. 2025 Mar 7. doi: 10.1007/s00417-025-06787.
    PubMed         Abstract available


    Int J Infect Dis

  8. CAMELO S, Dioh W, Teixeira JP, Busse LW, et al
    Modulation of the Renin-Angiotensin System against COVID-19: A path forward?
    Int J Infect Dis. 2025 Mar 4:107867. doi: 10.1016/j.ijid.2025.107867.
    PubMed         Abstract available

  9. AKHTAR M, Hashmi AH, Manzoor S
    The Synergistic Tapestry: unraveling the interplay of Parvovirus B19 with other viruses.
    Int J Infect Dis. 2025 Feb 28:107865. doi: 10.1016/j.ijid.2025.107865.
    PubMed         Abstract available


    J Med Virol

  10. HANSEN KS, Jorgensen SE, Comert C, Schiottz-Christensen B, et al
    Genetic Landscape and Mitochondrial Metabolic Dysregulation in Patients Suffering From Severe Long COVID.
    J Med Virol. 2025;97:e70275.
    PubMed         Abstract available


  11. Correction to "Low Neutralization of SARS-CoV-2 Omicron BA5248, XBB15 and JN1 by Homologous Booster and Breakthrough Infection".
    J Med Virol. 2025;97:e70271.
    PubMed        

  12. ZONG Y, Kamoi K, Zhang J, Yang M, et al
    The Silent Epidemic: Unveiling Herpetic Uveitis in the Elderly.
    J Med Virol. 2025;97:e70286.
    PubMed         Abstract available


    J Travel Med

  13. SHIFERAW W, Dean JA, Mills D, Lau CL, et al
    Overseas- and locally-acquired sexually transmissible infections in Australia, 2017-2023.
    J Travel Med. 2025 Mar 5:taaf022. doi: 10.1093.
    PubMed         Abstract available


    J Virol

  14. KARL V, Hofmann M, Thimme R
    Role of antiviral CD8+ T cell immunity to SARS-CoV-2 infection and vaccination.
    J Virol. 2025 Mar 3:e0135024. doi: 10.1128/jvi.01350.
    PubMed         Abstract available

  15. MA Z, Li Z, Li Y, Zhao X, et al
    Changes in the motifs in the D0 and SD2 domains of the S protein drive the evolution of virulence in enteric coronavirus porcine epidemic diarrhea virus.
    J Virol. 2025 Mar 4:e0209224. doi: 10.1128/jvi.02092.
    PubMed         Abstract available

  16. HU H, Zhang Y, Zheng H, Zhao X, et al
    Thymic stromal lymphopoietin improves protective immunity of the SARS-CoV-2 subunit vaccine by inducing dendritic cell-dependent germinal center response.
    J Virol. 2025 Mar 4:e0232324. doi: 10.1128/jvi.02323.
    PubMed         Abstract available


    JAMA

  17. STAR J, Han X, Smith RA, Schafer EJ, et al
    Cancer Screening 3 Years After the Onset of the COVID-19 Pandemic.
    JAMA. 2025 Mar 5:e250902. doi: 10.1001/jama.2025.0902.
    PubMed        


    Lancet Infect Dis

  18. ZHANG L, Kempf A, Nehlmeier I, Chen N, et al
    Host cell entry and neutralisation sensitivity of the emerging SARS-CoV-2 variant LP.8.1.
    Lancet Infect Dis. 2025 Feb 26:S1473-3099(25)00113.
    PubMed        


    Life Sci

  19. DUERR GD, Hamiko M, Beer J, Nattermann J, et al
    The interplay between COVID-19 and heart disease: Unravelling a complex connection.
    Life Sci. 2025 Mar 3:123524. doi: 10.1016/j.lfs.2025.123524.
    PubMed         Abstract available


    Nature

  20. TRAN-KIEM C, Paredes MI, Perofsky AC, Frisbie LA, et al
    Fine-scale patterns of SARS-CoV-2 spread from identical pathogen sequences.
    Nature. 2025 Mar 5. doi: 10.1038/s41586-025-08637.
    PubMed         Abstract available


    Science

  21. WEI X, Qian W, Narasimhan H, Chan T, et al
    Macrophage peroxisomes guide alveolar regeneration and limit SARS-CoV-2 tissue sequelae.
    Science. 2025;387:eadq2509.
    PubMed         Abstract available

  22. SARIOL A, Perlman S
    Lung inflammation drives Long Covid.
    Science. 2025;387:1039-1040.
    PubMed         Abstract available


    Zhonghua Jie He He Hu Xi Za Zhi

  23. ZHENG YJ, Hou JY, Zhong J, Ye XW, et al
    [A case of COVID-19-associated pulmonary aspergillosis combined with COVID-19-associated pulmonary mucormycosis].
    Zhonghua Jie He He Hu Xi Za Zhi. 2025;48:267-271.
    PubMed         Abstract available

#Influenza and Other Respiratory Viruses Research #References (by AMEDEO, March 8 '25)

 


    Antiviral Res

  1. PADEY B, Droillard C, Duliere V, Fouret J, et al
    Host-targeted repurposed diltiazem enhances the antiviral activity of direct acting antivirals against Influenza A virus and SARS-CoV-2.
    Antiviral Res. 2025 Mar 4:106138. doi: 10.1016/j.antiviral.2025.106138.
    PubMed         Abstract available

  2. INOUE A, Ichikawa T, Wada D, Maruyama S, et al
    M49L and other drug resistance mutations emerging in individuals after administration of ensitrelvir in Japanese clinical settings.
    Antiviral Res. 2025;236:106118.
    PubMed         Abstract available

  3. UEHARA T, Yotsuyanagi H, Ohmagari N, Doi Y, et al
    Ensitrelvir treatment-emergent amino acid substitutions in SARS-CoV-2 3CL(pro) detected in the SCORPIO-SR phase 3 trial.
    Antiviral Res. 2025 Jan 30:106097. doi: 10.1016/j.antiviral.2025.106097.
    PubMed         Abstract available


    Biochem Biophys Res Commun

  4. IMBIAKHA B, Ezzatpour S, Buchholz DW, Poosala S, et al
    Novel nanobody drug conjugate as a prophylactic or therapeutic against SARS-CoV-2 infection in mice.
    Biochem Biophys Res Commun. 2025;753:151480.
    PubMed         Abstract available


    BMC Pediatr

  5. XU YY, Dai ZZ, Zhou H, Li H, et al
    Postoperative cardiopulmonary complications in children with preoperative Omicron SARS-CoV-2 variants infection: a single-center retrospective cohort study.
    BMC Pediatr. 2025;25:162.
    PubMed         Abstract available


    Epidemiol Infect

  6. WASIK BR, Damodaran L, Maltepes MA, Voorhees IEH, et al
    THE EVOLUTION AND EPIDEMIOLOGY OF H3N2 CANINE INFLUENZA VIRUS AFTER 20 YEARS IN DOGS.
    Epidemiol Infect. 2025 Mar 5:1-38. doi: 10.1017/S0950268825000251.
    PubMed        


    J Infect

  7. YANG J, Zheng S, Sun J, Wu H, et al
    A human-infecting H10N5 avian influenza virus: clinical features, virus reassortment, receptor-binding affinity, and possible transmission routes.
    J Infect. 2025 Mar 4:106456. doi: 10.1016/j.jinf.2025.106456.
    PubMed         Abstract available

  8. SONG Y, Gong YN, Chen KF, Smith DK, et al
    Global epidemiology, seasonality and climatic drivers of the four human parainfluenza virus types.
    J Infect. 2025 Feb 26:106451. doi: 10.1016/j.jinf.2025.106451.
    PubMed         Abstract available

  9. FENG Q, Wang J, Wang X, Tian J, et al
    Clinical epidemiological characteristics of hospitalized pediatric viral community-acquired pneumonia in China.
    J Infect. 2025;90:106450.
    PubMed         Abstract available

  10. MAZARAKIS N, Toh ZQ, Neal E, Bright K, et al
    The immunogenicity, reactogenicity, and safety of a bivalent mRNA or protein COVID-19 vaccine given as a fourth dose.
    J Infect. 2025 Feb 18:106447. doi: 10.1016/j.jinf.2025.106447.
    PubMed         Abstract available

  11. LIANG C, Begier E, Hagel S, Ankert J, et al
    Incidence of RSV-related hospitalizations for ARIs, including CAP: Data from the German prospective ThEpiCAP study.
    J Infect. 2025;90:106440.
    PubMed         Abstract available

  12. NOBLE C, McDonald E, Nicholson S, Biering-Sorensen S, et al
    Characterising the SARS-CoV-2 nucleocapsid (N) protein antibody response.
    J Infect. 2025 Feb 6:106436. doi: 10.1016/j.jinf.2025.106436.
    PubMed         Abstract available

  13. QUINT JK, Dube S, Carty L, Yokota R, et al
    Immunocompromised individuals remain at risk of COVID-19: 2023 results from the observational INFORM study.
    J Infect. 2025 Jan 29:106432. doi: 10.1016/j.jinf.2025.106432.
    PubMed         Abstract available


    J Virol Methods

  14. GASTELBONDO-PASTRANA B, Florez L, Guzman C, Torres K, et al
    Phenol-free in-house kit for RNA extraction with applicability to SARS-CoV-2 genomic sequencing studies: A contribution to biotechnological sovereignty in Colombia.
    J Virol Methods. 2025;334:115116.
    PubMed         Abstract available


    Lancet

  15. THE LANCET
    H5N1 avian influenza: technical solutions, political challenges.
    Lancet. 2025;405:671.
    PubMed        


    N Engl J Med

  16. WANG JJ, Warkentin TE, Schonborn L, Wheeler MB, et al
    VITT-like Monoclonal Gammopathy of Thrombotic Significance.
    N Engl J Med. 2025 Feb 12. doi: 10.1056/NEJMoa2415930.
    PubMed         Abstract available


    PLoS Comput Biol

  17. ZHAN X, Xu Q, Zheng Y, Lu G, et al
    Reliability-enhanced data cleaning in biomedical machine learning using inductive conformal prediction.
    PLoS Comput Biol. 2025;21:e1012803.
    PubMed         Abstract available

  18. CASABURI P, Dall'Amico L, Gozzi N, Kalimeri K, et al
    Resilience of mobility network to dynamic population response across COVID-19 interventions: Evidences from Chile.
    PLoS Comput Biol. 2025;21:e1012802.
    PubMed         Abstract available


    PLoS One

  19. KLEBER M, Meunier-Beillard N, Fournel I, Ksiazek E, et al
    Barriers to and facilitators of rehabilitation according to socio-economic status, after acute respiratory distress syndrome due to COVID-19: A qualitative study in the RECOVIDS cohort.
    PLoS One. 2025;20:e0316318.
    PubMed         Abstract available

  20. BURRY RD, Pike A, Maddigan J, Rauman P, et al
    New graduate nurses' experiences with and perceptions of their mental health and well-being during the COVID-19 pandemic: An interpretive description study protocol.
    PLoS One. 2025;20:e0315852.
    PubMed         Abstract available

  21. RICHARD L, Carter B, Liu M, Nisenbaum R, et al
    Incidence and factors associated with SARS-CoV-2 infection and re-infection among people experiencing homelessness in Toronto, Canada: A prospective cohort study.
    PLoS One. 2025;20:e0319296.
    PubMed         Abstract available

  22. MANNA RM, Rahman MH, Ara T, Usmani NG, et al
    Impact of COVID-19 on In-Patient and Out-Patient services in Bangladesh.
    PLoS One. 2025;20:e0315626.
    PubMed         Abstract available

  23. VESELI B, Seifert R, Clement M, Shehu E, et al
    Trading-off health safety, civil liberties, and unemployment based on communication strategies: the social dilemma in fighting pandemics.
    PLoS One. 2025;20:e0318541.
    PubMed         Abstract available

  24. KUMADOR DK, Opoku-Mensah A, Tackie-Ofosu V, Mahama S, et al
    Preterm delivery in Ghana: challenges and implications for maternal mental health trajectories.
    PLoS One. 2025;20:e0317147.
    PubMed         Abstract available

  25. PUTRI ND, Laksanawati IS, Husada D, Kaswandani N, et al
    A systematic review of post COVID-19 condition in children and adolescents: Gap in evidence from low-and -middle-income countries and the impact of SARS-COV-2 variants.
    PLoS One. 2025;20:e0315815.
    PubMed         Abstract available

  26. KATZ VS, Jordan AB, Ognyanova K
    Digital inequalities and U.S. undergraduate outcomes over the first two years of the COVID-19 pandemic.
    PLoS One. 2025;20:e0319000.
    PubMed         Abstract available

  27. DI RISO D, Spaggiari S, Calignano G, Rigo P, et al
    Wearing face masks when no longer mandatory: An exploratory study about attitudinal and psychological health factors in a large Italian sample.
    PLoS One. 2025;20:e0314607.
    PubMed         Abstract available

  28. KWAN AT, Vargo J, Kurtz C, Panditrao M, et al
    The integration of health equity into policy to reduce disparities: Lessons from California during the COVID-19 pandemic.
    PLoS One. 2025;20:e0316517.
    PubMed         Abstract available

  29. AL MASOODI WTM, Radhi SW, Abdalsada HK, Niu M, et al
    Increased galanin-galanin receptor 1 signaling, inflammation, and insulin resistance are associated with affective symptoms and chronic fatigue syndrome due to long COVID.
    PLoS One. 2025;20:e0316373.
    PubMed         Abstract available

  30. KENDZERSKA T, Pugliese M, Manuel D, Sadatsafavi M, et al
    Healthcare utilization trends in adults with asthma or COPD during the first year of COVID-19 pandemic in comparison to pre-pandemic: A population-based study.
    PLoS One. 2025;20:e0316553.
    PubMed         Abstract available


    Proc Natl Acad Sci U S A

  31. MA Y, Wang J, Cui F, Tang L, et al
    Independent and combined effects of long-term air pollution exposure and genetic predisposition on COVID-19 severity: A population-based cohort study.
    Proc Natl Acad Sci U S A. 2025;122:e2421513122.
    PubMed         Abstract available

  32. ZHU Y, Cong Y, Sun Y, Sheng S, et al
    Molecular patterns of matrix protein 1 (M1): A strong predictor of adaptive evolution in H9N2 avian influenza viruses.
    Proc Natl Acad Sci U S A. 2025;122:e2423983122.
    PubMed         Abstract available


    Vaccine

  33. RAJA AI, Connor RI, Ashare A, Weiner JA, et al
    Binding and neutralising antibodies to respiratory syncytial virus and influenza A virus in serum and bronchoalveolar lavage fluid of healthy adults in the United States: A cross-sectional study.
    Vaccine. 2025;53:126936.
    PubMed         Abstract available

  34. COTTER LM, Hopkins-Sheets M, Yang S, Passmore SR, et al
    Increasing confidence for pediatric COVID-19 and influenza vaccines using messages affirming parental autonomy: A randomized online experiment.
    Vaccine. 2025;53:126947.
    PubMed         Abstract available

  35. NIU Y, Yan Y, Hu Y, Yang X, et al
    A novel tetravalent influenza vaccine based on one chimpanzee adenoviral vector.
    Vaccine. 2025;53:126959.
    PubMed         Abstract available

  36. RIGAMONTI V, Torri V, Morris SK, Ieva F, et al
    Real-world effectiveness of influenza vaccination in preventing influenza and influenza-like illness in children.
    Vaccine. 2025;53:126946.
    PubMed         Abstract available

  37. MACKENZIE LJ, Bousie JA, Newman P, Cunningham J, et al
    What three years of COVID-19 vaccine administration reveals about the incidence of shoulder injury related to vaccine administration (SIRVA).
    Vaccine. 2025;51:126892.
    PubMed         Abstract available

  38. ATTI A, England A, Sung J, Foulkes S, et al
    Estimating neutralising antibody responses against emerging SARS-CoV-2 variants utilising convalescent sera before the roll-out of XBB-lineage vaccines.
    Vaccine. 2025;51:126898.
    PubMed         Abstract available

  39. MEYERS E, De Rop L, Deschepper E, Duysburgh E, et al
    SARS-CoV-2 seroreversion and all-cause mortality in nursing home residents and staff post-primary course vaccination in Belgium between February and December 2021.
    Vaccine. 2025;51:126865.
    PubMed         Abstract available

  40. HALL C, Lanning J, Romano CJ, Bukowinski AT, et al
    COVID-19 vaccine initiation in pregnancy and risk for adverse neonatal outcomes among United States military service members, January-December 2021.
    Vaccine. 2025;51:126894.
    PubMed         Abstract available

  41. SMITH DS, Postma M, Fisman D, Mould-Quevedo J, et al
    Cost-effectiveness models assessing COVID-19 booster vaccines across eight countries: A review of methods and data inputs.
    Vaccine. 2025;51:126879.
    PubMed         Abstract available

  42. OLIVIERI G, Amodio D, Manno EC, Santilli V, et al
    Shielding the immunocompromised: COVID-19 prevention strategies for patients with primary and secondary immunodeficiencies.
    Vaccine. 2025;51:126853.
    PubMed         Abstract available


    Virology

  43. LAI SK, Lee ZQ, Tan TI, Tan BH, et al
    Evidence that the cell glycocalyx envelops respiratory syncytial virus (RSV) particles that form on the surface of RSV-infected human airway cells.
    Virology. 2025;604:110415.
    PubMed         Abstract available

  44. HILLS FR, Geoghegan JL, Bostina M
    Architects of infection: A structural overview of SARS-related coronavirus spike glycoproteins.
    Virology. 2025;604:110383.
    PubMed         Abstract available

  45. YAMAMOTO A, Ito H, Sakaguchi T, Higashiura A, et al
    Structural insights into nucleocapsid protein variability: Implications for PJ34 efficacy against SARS-CoV-2.
    Virology. 2025;604:110411.
    PubMed         Abstract available

  46. FRAGOSO-SAAVEDRA M, Liu Q
    Towards developing multistrain PEDV vaccines: Integrating basic concepts and SARS-CoV-2 pan-sarbecovirus strategies.
    Virology. 2025;604:110412.
    PubMed         Abstract available

  47. SUGRUE RJ, Tan BH
    The link between respiratory syncytial virus (RSV) morphogenesis and virus transmission: Towards a paradigm for understanding RSV transmission in the upper airway.
    Virology. 2025;604:110413.
    PubMed         Abstract available

  48. SHI H, Inankur B, Yin J
    Serum starvation impacts rhinovirus spread from cell to cell.
    Virology. 2025;604:110408.
    PubMed         Abstract available

  49. PATEL H, Kukol A
    Harnessing viral internal proteins to combat flu and beyond.
    Virology. 2025;604:110414.
    PubMed         Abstract available

  50. SAHA A, Choudhary S, Walia P, Kumar P, et al
    Transformative approaches in SARS-CoV-2 management: Vaccines, therapeutics and future direction.
    Virology. 2025;604:110394.
    PubMed         Abstract available

  51. HE M, He CQ, Ding NZ
    Human viruses: An ever-increasing list.
    Virology. 2025;604:110445.
    PubMed         Abstract available

  52. PORTER SM, Hartwig AE, Quilici M, Bosco-Lauth AM, et al
    Intraspecific SARS-CoV-2 Delta variant transmission among red fox (Vulpes vulpes) and striped skunk (Mephitis mephitis).
    Virology. 2025;604:110446.
    PubMed         Abstract available

Friday, March 7, 2025

Neutralizing #Antibody #Response to #Influenza A(#H5N1) Virus in Dairy #Farm #Workers, #Michigan, #USA

Abstract

Since March 2024, highly pathogenic avian influenza A(H5N1) viruses have caused outbreaks in dairy cattle and poultry in the United States, and they continue to spill over into humans. However, data on human immune response to those viruses is limited. We report neutralizing antibody responses in 2 dairy farm worker H5N1 cases.

Source: US Centers for Disease Control and Prevention, https://wwwnc.cdc.gov/eid/article/31/4/25-0007_article

____

#USA, Monitoring for Avian #Influenza A(#H5) Virus In #Wastewater {March 7 '25}



{Excerpt}

Time Period: February 23 - March 01, 2025

- H5 Detection8 sites (1.8%)

- No Detection445 sites (98.2%)

- No samples in last week100 sites



(...)

Source: US Centers for Disease Control and Prevention, https://www.cdc.gov/bird-flu/h5-monitoring/index.html

____

#UK, #England: #Lassa #fever contact #tracing underway

The UK Health Security Agency has been informed under the International Health Regulations that an individual travelled to England from Nigeria while they were unwell with Lassa fever at the end of February. The individual returned to Nigeria where they were diagnosed.

We are now working to identify people who were in contact with the affected individual while they were in the country.

Lassa fever does not spread easily between people and the overall risk to the public is very low. If you have not been contacted by UKHSA then you are very unlikely to have had any exposure to Lassa fever and do not need to take action.

Lassa fever causes acute infections which can range from very mild symptoms through to a severe viral haemorrhagic fever. People usually become infected with Lassa virus through exposure to food or household items contaminated with urine or faeces of infected rats – present in some West African countries where the disease is endemic. The virus can also be spread between people through contact with infectious bodily fluids.

Dr Meera Chand, Deputy Director at the UK Health Security Agency, said:

''Our Health Protection Teams are working at pace to get in touch with people who were in contact with this individual while they were in England, to ensure they seek appropriate medical care and testing should they develop any symptoms. The infection does not spread easily between people, and the overall risk to the UK population is very low.''

Source: UK Health Security Agency, https://www.gov.uk/government/news/lassa-fever-contact-tracing-underway

____

#Russia - #Influenza A #H5N1 viruses of high pathogenicity (Inf. with) (non-poultry including wild birds) (2017-) - Immediate notification

 A wild Carrion Crow in Khabarovsk Region.

Source: https://wahis.woah.org/#/in-review/6304

____

#UK - High pathogenicity avian #influenza #H5N1 viruses (#poultry) (Inf. with) - Immediate notification

{England} Commercial turkey fattening unit with 27,658 turkeys. Increased mortality and other clinical signs of HPAI reported. The samples were positive for HPAI H5N1.

Source: WOAH, https://wahis.woah.org/#/in-review/6314

____

#Spain - #Influenza A #H5N1 viruses of high pathogenicity (Inf. with) (non-poultry including wild birds) (2017-) - Immediate notification

 This event will collect the detections made by sampling carried out in 2025. Peregrine falcon, adult male, transmitted to a Centre for the protection of endangered species on 05/02/2025 with nervous symptoms, that died on 06/02/2025. The necropsy was performed at the Wildlife Center for Analysis and Diagnosis.

Source: WOAH, https://wahis.woah.org/#/in-review/6316

____


Variable #DPP4 #expression in multiciliated cells of the #human #nasal #epithelium as a determinant for #MERS-CoV tropism

Significance

Middle East respiratory syndrome coronavirus (MERS-CoV) is a highly pathogenic coronavirus that continues to cause periodic outbreaks in humans with a case-fatality rate of approximately 35%. MERS-CoV generally transmits poorly, but superspreading events are well documented. Efficient human-to-human transmission of respiratory viruses generally correlates with a tropism for the upper respiratory tract, but this tropism for MERS-CoV remains poorly understood. Characterizing the MERS-CoV tropism in the human upper respiratory tract is of critical importance to understand its epidemiology and pandemic potential of future MERS-CoV variants and other dipeptidyl peptidase 4 (DPP4)-utilizing coronaviruses present in animal reservoirs.


Abstract

Transmissibility of respiratory viruses is a complex viral trait that is intricately linked to tropism. Several highly transmissible viruses, including severe acute respiratory syndrome coronavirus 2 and Influenza viruses, specifically target multiciliated cells in the upper respiratory tract to facilitate efficient human-to-human transmission. In contrast, the zoonotic Middle East respiratory syndrome coronavirus (MERS-CoV) generally transmits poorly between humans, which is largely attributed to the absence of its receptor dipeptidyl peptidase 4 (DPP4) in the upper respiratory tract. At the same time, MERS-CoV epidemiology is characterized by occasional superspreading events, suggesting that some individuals can disseminate this virus effectively. Here, we utilized well-differentiated human pulmonary and nasal airway organoid-derived cultures to further delineate the respiratory tropism of MERS-CoV. We find that MERS-CoV replicated to high titers in both pulmonary and nasal airway cultures. Using single-cell messenger-RNA sequencing, immunofluorescence, and immunohistochemistry, we show that MERS-CoV preferentially targeted multiciliated cells, leading to loss of ciliary coverage. MERS-CoV cellular tropism was dependent on the differentiation of the organoid-derived cultures, and replication efficiency varied considerably between donors. Similarly, variable and focal expression of DPP4 was revealed in human nose tissues. This study indicates that the upper respiratory tract tropism of MERS-CoV may vary between individuals due to differences in DPP4 expression, providing an explanation for the unpredictable transmission pattern of MERS-CoV.

Source: Proceedings of the National Academy of Sciences of the United States of America, https://www.pnas.org/doi/10.1073/pnas.2410630122

____

A #human-infecting #H10N5 avian #influenza virus: #clinical features, virus #reassortment, #receptor-binding affinity, and possible #transmission routes

Abstract

Background

In late 2023, the first human case caused by an H10N5 avian influenza virus (AIV) was diagnosed in China. H10Ny AIVs have been identified in various poultry and wild birds in Eurasia, the Americas, and Oceania.

Methods

We analyzed the clinical data of the H10N5 AIV-infected patient, isolated the virus, and evaluated the virus receptor-binding properties together with the H10N8 and H10N3 AIVs identified in humans and poultry. The genomic data of the human-infecting H10N5 strain and avian H10Ny AIVs (n = 48, including 16 strains of H10N3 and 2 strains of H10N8) from live poultry markets in China, during 2019–2021, were sequenced. We inferred the genetic origin and spread pattern of the H10N5 AIV using the phylodynamic methods. In addition, given all available nucleotide sequences, the spatial-temporal dynamics, host distribution, and the maximum-likelihood phylogenies of global H10 AIVs were reconstructed.

Findings

The first H10N5 AIV-infected human case co-infected with seasonal influenza H3N2 virus was identified. Unfortunately, the patient died after systematic treatments. The H10N5 virus predominantly bound avian-type receptor, without any known mammalian-adapted mutations. Phylodynamic inference indicated that the H10N5 AIV was generated by multiple reassortments among viruses from Korea and Japan, central Asia, and China in late 2022, acquiring the seven gene segments from H10N7 or other low pathogenic AIVs in wild Anseriformes, except for the PA gene from H5N2 AIVs in Domestic Anseriformes. The HA gene of the H10N5 virus belongs to the North American lineage, which was probably introduced into Asia by migratory birds, subsequently forming local circulation.

Interpretation

Unlike the human-infecting H10N3 and H10N8 AIVs acquiring six internal protein-coding genes from H9N2 AIVs in domestic poultry, the human-infecting H10N5 AIV was generated through multiple reassortments among viruses mainly carried by wild Anseriformes. Furthermore, worldwide distribution, inter-continental transmission, and genetic exchanges between Eurasian and North American lineages call for more concerns about influenza surveillance on H10Ny AIVs, especially in the flyway overlapping areas.

Source: Journal of Infection, https://www.journalofinfection.com/article/S0163-4453(25)00050-7/fulltext

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#Belgium - #Influenza A #H5N1 viruses of high pathogenicity (Inf. with) (non-poultry including wild birds) (2017-) - Follow up report 8

Two wild cats, two European Polecats, Forty-four Domestic Mustelidae, Twenty-two foxes in various Regions.

Source: WOAH, https://wahis.woah.org/#/in-review/4971?reportId=172740&fromPage=event-dashboard-url

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#Risk to People in #USA from Highly Pathogenic Avian #Influenza A(#H5N1) Viruses {as of Feb. 28 '25}



As of February 28, 2025

CDC assessed the risk from H5N1 viruses to the U.S. general population and to populations in the United States with contact with potentially infected animals, including through contaminated surfaces or fluids. Risk describes the potential public health implications and significance of an outbreak for populations assessed. See definitions below for more detail.


{Risk posed by H5N1 viruses to the United States. Please see methods section for further information on definitions of terms.}

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The purpose of this assessment is to evaluate the current public health risk of H5N1 viruses to the general U.S. population and to those in contact with potentially infected animals or contaminated surfaces or fluids, and to inform public health preparedness efforts.

CDC assessed risk by considering both likelihood and impact of infection in each population (...). Both the likelihood and impact of infection are assessed at a population level. Likelihood of infection refers to the probability of infection occurring in the population of interest and considers factors such as the likelihood of transmission to or within the population, the number of people exposed and/or infected, population immunity against infection, and effectiveness or capacity of public health measures to limit spread. Impact of infection considers factors such as the severity of disease, level of population immunity against severe disease, availability of resources to limit impact, and necessary public health response resources.

This assessment outlines the current risk posed by H5N1 viruses to populations in the United States based on currently available data; however, this risk could change. H5N1 viruses are of public health concern because of their pandemic potential. If an H5N1 virus acquires the ability through genetic mutation or reassortment to cause sustained human-to-human transmission, it could cause a pandemic. Because influenza viruses constantly change, CDC monitors these viruses routinely, works to prevent further spread of H5N1 viruses between animals and people, and coordinates H5N1 preparedness activities. CDC will update this risk assessment as needed.


Risk assessment for general U.S. population


{Risk posed by H5N1 viruses to the general U.S. population. Please see methods section for further information on definitions of terms.}

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Risk

CDC assesses the overall risk to the general U.S. population as low, with moderate confidence. Of note, for any individual in this population, risk will vary depending on nature of, frequency, and time spent in contact with infected or potentially infected animals or contaminated surfaces or fluids. We also include a section below on factors that could change our assessment.

Likelihood

CDC assesses the likelihood of infection for the general U.S. population as very low. Factors that informed our assessment of likelihood include the following:

- To date, there has been no evidence of human-to-human spread of H5N1 viruses in the United States, and there have been very few reported cases among people in the general population to date. The majority of confirmed human H5N1 cases in the United States since 2024 (67 of 70) were associated with exposure to infected animals, including poultry and dairy cows. Three U.S. cases in humans with no known exposure to infected animals have been identified.

- The likelihood of exposure is higher among people in settings where infected birds or dairy cows have been identified, including occupational settings. See our risk assessment for populations in contact with potentially infected animals below.

- To date, there has been little evidence of genetic changes that suggest adaptation to humans.

- Genetic analysis of samples from the fatal Louisiana case detected low frequency changes that may result in the increased ability of these viruses to infect the human upper respiratory tract. These or similar changes or mutations may be needed for H5N1 viruses to be able to spread more easily to and among humans.

- The observed genetic changes in the patient's H5N1 virus, when compared with the virus identified from the patient's backyard poultry (the presumed source of human infection), suggest that the changes were likely generated by virus replication in this patient after hospital admission for advanced disease and were not present at the time of infection.

- Genetic analysis of samples from the Wyoming and Nevada cases found mutations that have previously been associated with more efficient H5N1 virus replication in mammalian cells and in people.

- The likelihood of exposure is higher among people consuming raw (unpasteurized) milk from infected animals, although the chance of people acquiring H5N1 virus infection from consuming raw milk is not clear at this time.

- Consumption of raw milk can lead to other serious health outcomes, especially for certain populations. CDC and FDA recommend against consuming raw milk.

- Raw milk sold commercially in California has tested positive for H5N1 virus. While USDA's National Milk Testing Strategy tests milk samples from across the country before pasteurization, raw milk in many states can be purchased directly from the farms where it is produced, and may not be captured in these testing protocols.

- There are no confirmed cases of human H5N1 virus infection associated with consuming contaminated raw milk. However, animals such as mice and cats have been infected following consumption of milk contaminated with H5N1 virus, and the possibility of human infection with H5N1 virus through ingestion of raw milk cannot be ruled out.

- The United States has resources to detect symptomatic human cases of H5N1 and can implement measures to reduce opportunities for onward spread, at the current rate of infection (on average, approximately six to seven cases per month since April 2024).

- Human cases of H5N1 are nationally notifiable, meaning every identified case is investigated by local and state public health and reported to CDC.

- CDC and a wide range of public health and healthcare partners conduct regular monitoring for influenza viruses and illness activity, reviewing data from case reporting, public health laboratory monitoring, clinical laboratory trends, ED visits, and wastewater surveillance.

- As of February 2025, more than 136,000 specimens have been tested using a protocol that would have detected A(H5) virus, and more than 15,000 people have been monitored after exposure to animals infected with H5N1 virus.

- CDC now recommends subtyping of all influenza A virus-positive specimens from hospitalized patients on an accelerated basis.

- CDC has also provided interim recommendations for prevention, monitoring, and public health investigations that indicate, where feasible, an expansion of testing to include an offer of testing to asymptomatic individuals with high likelihood of unprotected exposure to H5N1 virus.

- Three commercial testing laboratories (Quest Diagnostics, Labcorp, and ARUP) in the United States now offer A(H5) testing, significantly increasing testing access and diagnostic capacity.


Impact

CDC assesses the impact of infection for the general U.S. population as moderate. Factors that informed the assessment of impact include the following:

- The majority of reported U.S. cases have had mild illness characterized by conjunctivitis and/or upper respiratory symptoms, irrespective of the genotype. Of the three confirmed cases of H5N1 in humans in 2025, one was in a dairy worker, and two people had exposure to poultry and experienced severe illness requiring hospitalization.

- On December 13, 2024, CDC confirmed a severe case of H5N1 in an individual in Louisiana. The patient was infected with a genotype of H5N1 virus closely related to viruses recently detected in wild birds and poultry in the United States and in recent human cases in British Columbia, Canada, Iowa, and Washington State. The patient in Louisiana died, and the patient in British Columbia was critically ill.

- Historically, there has been a wide clinical spectrum of H5N1 illness (mild to severe), and deaths have occurred. Prior to the current U.S. outbreak, most reported human H5N1 cases since 1997 were identified late in the course of illness after hospital admission and with severe disease (e.g., pneumonia).

- The general population is not known to have specific immunity against H5N1 virus.

- Medical countermeasures are available to help limit the severity of disease should a member of the general U.S. population become infected.

- Genetic analysis suggests that that H5N1 viruses currently circulating among wild birds, poultry, and dairy cattle in the United States are susceptible to available FDA-approved influenza antiviral medications. Antiviral treatment is currently recommended for patients with confirmed or suspected H5N1 virus infection.

- Antiviral post-exposure prophylaxis can be used to help prevent infection or illness and could be used specifically in those who had unprotected exposure to infected animals.

- Additionally, prompt treatment has been shown to attenuate severe seasonal influenza disease.

- No FDA-authorized or approved vaccines for prevention of H5N1 virus infection are currently commercially available for the general population in the United States.

- However, under the National Pre-Pandemic Influenza Vaccine Stockpile (NPIVS) program, the Department of Health and Human Services routinely develops vaccines against a wide range of novel influenza A viruses, including H5N1 viruses, and efforts are under way to accelerate the availability of a well-matched vaccine and increase inventory.

- The animal and public health response to outbreaks in poultry and dairy cows has societal and economic impacts for the U.S. general population, including the rise of egg prices, a decrease in milk production, and food recalls.


Confidence

CDC has moderate confidence in this assessment. This degree of uncertainty is due to several factors, including variability in levels of testing among different animal populations and by geography, as well as the role of wild bird exposure in causing human infections, as the prevalence of H5N1 virus infections in wild birds is difficult to assess. There is additional uncertainty on likelihood of human exposures from other infected animals, including exposure to infected cats (house cats or big cats in zoo and animal sanctuary settings). CDC also recognizes uncertainty in impact, as the effects of transmission route and virus genotype in human infection are unclear.


Risk to populations in contact with potentially infected animals or contaminated surfaces or fluids


{Risk posed by H5N1 viruses to populations in contact with potentially infected animals or contaminated surfaces or fluids. Please see methods section for further information on definitions of terms.}


Risk

The risk posed by H5N1 viruses to humans in contact with potentially infected animals or contaminated surfaces or fluids is moderate to high. Of note, for any individual in this population, risk will vary depending on use of workplace controls including personal protective equipment (PPE), nature and frequency of exposure, and time spent in contact with infected or potentially infected animals or contaminated surfaces or fluids. We also include a section below on factors that could change our assessment.


Likelihood

CDC assesses the likelihood of infection for populations in contact with potentially infected animals or contaminated surfaces or fluids as low to high. Individual risk will vary depending on the frequency, duration, and nature of contact with potentially infected animals. The likelihood of exposure from important classes of animals are outlined below:

- The likelihood of exposure to H5N1 viruses from infected commercial poultry and dairy cows is moderate to high.

- H5N1 viruses are widespread in U.S. poultry and dairy cows, with detections in more than 160,000,000 birds in all 50 states since January 2022 and more than 970 dairy herds in 17 states since January 2024.

- The majority of individuals with confirmed H5N1 virus infection (67 of 70) had exposures associated with commercial agriculture or backyard poultry.

- Of these, 41 were exposed to dairy herds (cows) and 24 were exposed to poultry farms and culling operations.

- Some workers were identified as cases before any animals on the farm had tested positive for H5N1.

- Among dairy workers (including veterinarians), the likelihood of exposure may be particularly high among those working in milking parlors and other environments with contaminated surfaces and fluids.

- Use of PPE is low among this population, and increased availability and use can decrease the likelihood of exposure, especially for workers in direct contact with animals or their secretions.

- Several serosurveys have been conducted to identify recent infections that may not have been detected. For example, in a serosurvey of bovine practitioners, evidence of infection was found in three individuals who were asymptomatic, including two without exposures to animals with known or suspected H5N1 virus infection and one who did not practice in a state with known infected cattle. In a serosurvey of dairy workers in Michigan and Colorado, 7% of those tested had serologic evidence of infection.

- The likelihood of exposure to H5N1 viruses from infected non-commercial poultry and wild birds is moderate.

- H5N1 viruses also circulate among non-commercial poultry and wild birds, and among some other wild animals. H5N1 viruses have been detected in more than 12,000 wild birds across 52 jurisdictions in the United States since January 2022.

- Exposure to sick or dying birds infected with H5N1 viruses, including potentially through contaminated fluids or surfaces, raises the likelihood of human infection. Exposure risk may be elevated in populations with animal contact, such as backyard poultry farmers and wild bird or waterfowl hunters.

- The likelihood of exposure to H5N1 viruses from recreational animal activities, such as visiting agricultural fairs, livestock shows, or petting zoos, is low to moderate.

- None of the reported cases had a known exposure to an animal involved in a recreational animal activity.

- Animal monitoring and infection control measures have the potential to reduce the likelihood of exposure to H5N1 viruses for people.

- USDA Federal Orders require mandatory testing of lactating dairy cows prior to interstate movement, and require herd owners with positive cows to provide epidemiological information to facilitate contact tracing and disease monitoring. Additionally, national testing programs are in place for monitoring wild birds and poultry.

- Extensive monitoring of exposed persons and public health control efforts are in place. CDC has interim recommendations for prevention, monitoring, and public health investigations of human cases of H5N1. CDC also has recommendations for worker protection and use of personal protective equipment (PPE) to reduce the risk of exposure.

- People with job-related or recreational exposures to birds or infected mammals can reduce their chance of infection using appropriate precautions to protect against H5N1.


Impact

CDC assesses the impact of human infection via exposure to potentially infected animals as moderate. In addition to the factors outlined in the Impact section for the general population, CDC notes economic and policy impacts, including the financial loss associated with population culling, product disposal, and loss of production. As of November 2024, more than $1.4 billion has been spent on response to ongoing H5N1 outbreaks in animals, and egg demand continues to exceed supply.


Confidence

CDC has moderate confidence in this assessment. This degree of uncertainty is due to factors including variability in levels of A(H5) testing among different animal populations and by geography, as well as the role of wild bird exposure in human infection, as the true prevalence of infection in animal populations is difficult to assess. There is additional uncertainty on likelihood of exposure to other infected animals, including exposure to infected cats (house cats or big cats in zoo and animal sanctuary settings). CDC also notes uncertainty in impact due to limited evidence on whether illness severity differs by transmission route and virus genotype.


Future Risk

This assessment outlines the risk posed to the United States by H5N1 viruses as of February 28, 2025, but CDC stresses this risk could change, as influenza A viruses can mutate quickly, and therefore have the potential to cause pandemics.

The viral changes needed to cause a pandemic are unpredictable. However, the high prevalence of H5N1 virus infections among animals in close contact with humans increases opportunities for mutation or reassortment that could lead to sustained person-to-person spread, causing a pandemic. It is possible that co-infections with seasonal influenza A and H5N1 viruses in the same person or animal provide opportunities for reassortment of genes between two influenza A viruses, potentially resulting in an influenza A virus with characteristics of both seasonal influenza A and H5N1 viruses that is more efficiently transmitted among people than current H5N1 viruses circulating among birds, cows, and other animals.

H5N1 virus infection can cause severe illness in people; H5N1 viruses historically have caused severe cases in humans. CDC has developed H5 candidate vaccine viruses (CVVs) that are expected to be effective against H5N1 viruses now circulating among wild birds, poultry, and cows in the United States. These H5 CVVs could be used to produce a vaccine for people, if needed, thereby reducing the risk for severe disease among humans. Access to antivirals for treatment or post-exposure prophylaxis could also decrease future risk of severe illness or transmission.

(...)


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Thursday, March 6, 2025

Examining the #Survival of A #H5N1 #Influenza Virus in Thermised Whole #Cow #Milk

Abstract

The recent spillover events of highly pathogenic avian influenza (HPAI) A(H5N1) clade 2.3.4.4b to dairy cattle, and high viral shedding in the milk from infected animals, has created concern that milk and dairy products could be a route for human infection. It has been demonstrated that pasteurization is effective in inactivating A(H5N1) in milk. However, multiple dairy products are made with unpasteurized but thermised milk. The aim of this study was to examine whether some conditions commonly used for thermisation are effective against inactivation of A(H5N1) in whole milk. For this purpose, we artificially inoculated whole raw cow milk with 6.5 log10 EID50 A(H5N1) and heated for 15 seconds at 60°C, 63°C and 66°C, the viral infectivity was tested using embryonated chicken eggs. We observed over 4 and 5 log10 reduction in viral infectivity at 60°C and 63°C, respectively. The viral infectivity was reduced to below the detection limit at 66°C. We also calculated the D-values, the time required to reduce the viral titer by one log10, for each treatment and as expected, we observed a decrease in D-values with increasing thermisation temperature. These data demonstrate that thermisation is effective in reducing the viral load and thus they allow for informed risk assessment of A(H5N1) contaminated dairy products made from thermized milk.

Source: BioRxIV, https://www.biorxiv.org/content/10.1101/2025.03.05.641644v1

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Cross-species and #mammal-to-mammal #transmission of clade 2.3.4.4b highly pathogenic avian #influenza A #H5N1 with #PB2 adaptations

Abstract

Highly pathogenic H5N1 avian influenza viruses (HPAIV) belonging to lineage 2.3.4.4b emerged in Chile in December 2022, leading to mass mortality events in wild birds, poultry, and marine mammals and one human case. We detected HPAIV in 7,33% (714/9745) of cases between December 2022–April 2023 and sequenced 177 H5N1 virus genomes from poultry, marine mammals, a human, and wild birds spanning >3800 km of Chilean coastline. Chilean viruses were closely related to Peru’s H5N1 outbreak, consistent with north-to-south spread down the Pacific coastline. One human virus and nine marine mammal viruses in Chile had the rare PB2 D701N mammalian-adaptation mutation and clustered phylogenetically despite being sampled 5 weeks and hundreds of kilometers apart. These viruses shared additional genetic signatures, including another mammalian PB2 adaptation (Q591K, n = 6), synonymous mutations, and minor variants. Several mutations were detected months later in sealions in the Atlantic coast, indicating that the pinniped outbreaks on the west and east coasts of South America are genetically linked. These data support sustained mammal-to-mammal transmission of HPAIV in marine mammals over thousands of kilometers of Chile’s Pacific coastline, which subsequently continued through the Atlantic coastline.

Source: Nature Communications, https://www.nature.com/articles/s41467-025-57338-z

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#XBB.1.5 monovalent #vaccine induces lasting cross-reactive responses to #SARS-CoV-2 #variants such as HV.1 and #JN1, as well as SARS-CoV-1, but elicits limited XBB.1.5 specific #antibodies

ABSTRACT

The evolution of the antibody response to the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is impacted by the nature and number of antigenic exposures. First-generation coronavirus disease 2019 (COVID-19) vaccines encoded an ancestral spike protein. Updated bivalent vaccines and breakthrough infections have shaped the intricate diversity of the polyclonal antibody response and specificity of individual antibody clones. We and others previously showed that bivalent vaccines containing the ancestral and Omicron (BA.5) spikes induce high levels of cross-reactive antibodies but undetectable BA.5-specific antibodies in serum. Here, we assessed sera collected before as well as 1 and 3 months following administration of an updated XBB.1.5 monovalent vaccine to individuals with diverse infection and vaccination histories. Vaccination increased neutralization against recent variants of concern, including HV.1, JN.1, and the vaccine-homologous XBB.1.5. Antibody binding and avidity against ancestral and XBB.1.5 antigens significantly increased after vaccination. However, antibody depletion experiments showed that most of the response was cross-reactive to the ancestral spike, and only low levels of XBB.1.5-specific antibodies to the spike or the receptor-binding domain were detected. Importantly, increased antibody levels were still detectable in circulation 3 months post-vaccination and cross-reacted with severe acute respiratory syndrome coronavirus 1 (SARS-CoV-1) as measured by pseudovirus neutralization and binding assays. Overall, our data suggest that the XBB.1.5 monovalent vaccine predominantly elicits a cross-reactive response imprinted by viral spike antigens encountered early during the pandemic.


IMPORTANCE

Updated COVID-19 vaccine formulations and SARS-CoV-2 exposure history affect the antibody response to SARS-CoV-2. High titers of antibodies are induced in serum by XBB.1.5 monovalent vaccination. Antibody depletion experiments reveal that the majority of the antibody response is cross-reactive to the ancestral spike, despite vaccination increasing neutralization against recently circulating Omicron variants. Vaccine-induced SARS-CoV-2 antibodies cross-react with SARS-CoV-1 and remain in the bloodstream for at least 3 months after immunization.

Source: mSphere, https://journals.asm.org/doi/10.1128/mbio.03607-24

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Wednesday, March 5, 2025

Impact of highly pathogenic avian #influenza virus on Black-headed #Gulls Chroicocephalus ridibundus population in #Poland in 2023

ABSTRACT

The highly pathogenic avian influenza virus (HPAIV) A(H5N1) has caused the most extensive and severe epizootic event affecting both poultry and wild birds globally. This study investigated the impact of HPAIV on the breeding population of the Black-headed Gull Chroicocephalus ridibundus, the most abundant gull species in Poland. During the 2023 outbreak, this species was reported as the most frequently infected in the country. A higher-than-natural adult mortality rate (greater than 1.5% of the breeding individuals) was observed in 114 surveyed colonies across all regions of Poland. Laboratory tests confirmed the presence of HPAIV in all 17 colonies sampled, with average adult mortality estimated at 26.1%, and ranging from 1.7% to 77.8%. The estimated mortality rate across all surveyed colonies was 22.2%. Extrapolations across the entire Polish breeding population (at least 115,000 pairs according to the national census) indicated that approximately 51,000 adult Black-headed Gulls might have perished due to HPAIV in 2023. The number of adults found dead was positively correlated with colony size (r = 0.733, P < 0.001). The deaths were associated with a single HPAIV genotype (BB) across all confirmed cases. Understanding the spread and severity of HPAIV in colonially breeding waterbirds, such as gulls, is essential for assessing the full extent of the threats this virus poses to wild bird populations.

Source: Avian Pathology, https://www.tandfonline.com/doi/full/10.1080/03079457.2025.2467122

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Real-time #epidemiological #surveillance #data: tracking the occurrences of avian #influenza #outbreaks around the world

Abstract

Objectives

This study aims to provide real-time surveillance of epidemiological outbreaks of avian influenza in humans and mammals. The primary objective is to understand and track the dynamics of outbreaks as they develop, facilitating timely interventions and informed public health decisions. The data collection is part of a broader initiative focused on improving preparedness and response capabilities to emerging health threats.

Data description

The dataset includes comprehensive and up-to-date information on epidemiological patterns, including geographic spread, incidence rates, and demographic factors. Collected through systematic monitoring and reporting systems, this dataset is invaluable to researchers seeking to understand the evolving nature of avian influenza outbreaks in the global context. By sharing these data, we aim to contribute to the collective knowledge base by supporting evidence-based strategies for effective public health management and intervention.

Source: BMC Research Notes, https://bmcresnotes.biomedcentral.com/articles/10.1186/s13104-024-07042-w

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Defining transmissible dose 50%, donor #inoculation dose that results in #airborne #transmission to 50% of contacts, for 2 #pandemic #influenza viruses in ferrets

Abstract

Ferrets are widely used to model airborne transmission of influenza viruses in humans. Airborne transmission is evaluated by infecting donor ferrets with a high virus dose (106 infectious units) and monitoring transmission to contact animals sharing the same airspace. However, humans can be infected with a broad range of influenza virus doses. Therefore, we evaluated the relationship between virus inoculation dose and transmission for two pandemic influenza viruses in ferrets. Donor ferrets were inoculated with 100 to 106 tissue culture infectious dose 50 (TCID50) of the 2009 pandemic H1N1 or 1968 H3N2 pandemic virus, and were then paired with respiratory contacts. Using the proportion of donors that became infected across virus doses, we calculated the infectious dose 50 (ID50). Subsequently, by comparing the proportion of respiratory contacts that became infected, we calculated the transmissible dose 50% (TD50): the donor inoculation dose that resulted in transmission to 50% of contacts. For the 2009 H1N1 virus, the ID50 and TD50 were equivalent at <1 TCID50. However, for the 1968 H3N2 virus, the ID50 and TD50 were <4 and 103.49 TCID50, respectively. The increased TD50 for the H3N2 virus was associated with reductions in peak viral titers and viral shedding in donors over decreasing virus inoculation doses. Collectively, these studies define a new measure of transmission that permits comparisons of transmissibility over a log scale. Using this metric, we show the 1968 pandemic H3N2 virus has reduced transmissibility in ferrets relative to the 2009 pandemic H1N1 virus.

Source: BioRxIV, https://www.biorxiv.org/content/10.1101/2025.03.04.641289v1

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#Pathogenicity and #transmissibility of #bovine-derived HPAI #H5N1 #B3.13 virus in #pigs

Abstract

Since the first emergence of highly pathogenic avian influenza (HPAI) H5N1 viruses in dairy cattle, the virus has continued to spread, reaching at least 16 states and at least 950 dairy herds in the United States. Subsequently, spillovers of the virus from dairy cattle to humans have been reported. Pigs are an important reservoir in influenza ecology because they serve as a mixing vessel in which novel reassortant viruses with pandemic potential can be generated. Here, we show that oro-respiratory infection of pigs resulted in productive replication of a bovine-derived HPAI H5N1 B3.13 virus. Infectious viruses were mainly identified in the lower respiratory tract of principal infected pigs, and sero-conversion was observed in most of the principal pigs at later time points. In one animal, we detected the emergence of a mutation in hemagglutinin (HA) previously associated with increased affinity for mammalian-type alpha 2,6-linked sialic acid receptors, but this mutation did not reach consensus levels. Sentinel contact pigs remained sero-negative throughout the study, indicating lack of transmission. The results support that pigs are susceptible to a bovine-derived HPAI H5N1 B3.13 virus, but this virus did not replicate as robustly in pigs as mink-derived HPAI H5N1 and swine-adapted influenza viruses.

Source: BioRxIV, https://www.biorxiv.org/content/10.1101/2025.03.04.641414v1

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Evolutionary Studies on the #Coxsackievirus A24 #Variants Causing Acute #Hemorrhagic #Conjunctivitis with Emphasis on the Recent #Outbreak of 2023 in #India

Abstract

Acute Hemorrhagic Conjunctivitis (AHC) is primarily caused by viral infections, with Coxsackievirus A-24v (CV-A24v) being a significant culprit. Enteroviruses, including CV-A24v, are responsible for global AHC outbreaks. Over time, CV-A24v has evolved, and genotype IV (GIV) has become the dominant strain. This study focused on examining the genetic features and evolutionary trends of CV-A24v responsible for the recent AHC outbreak of 2023 in India. Researchers isolated viral strains from ocular swabs and confirmed the presence of CV-A24v using reverse transcriptase quantitative PCR (RT-qPCR) and whole-genome sequencing. Genomic comparisons between isolates of 2023 and those from a previous outbreak in 2009 were conducted. Phylogenetic analysis revealed that the 2023 isolates formed a distinct cluster within GIV-5 and were related to recent strains from China and Pakistan. The older Indian isolates from 2009 grouped with GIV-3. New subclades, GIV-6 and GIV-7, were also identified in this study, indicating the diversification of CV-A24. Molecular clock and phylogeographic analysis traced the virus’s circulation back to the 1960s, with the common ancestor likely to have originated in Singapore in 1968. The 2023 Indian strains probably originated from Thailand around 2014, with subsequent spread to China and Pakistan. This study concluded that the 2023 outbreak was caused by a genetically distinct CV-A24v strain with nine mutations, underlining the virus’s ongoing evolution and adaptations and offering valuable insights for future outbreak control.

Source: Viruses, https://www.mdpi.com/1999-4915/17/3/371

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