Sunday, December 21, 2025

#Coronavirus Disease Research #References (by AMEDEO, Dec. 21 '25)

 


    Infect Control Hosp Epidemiol

  1. LI Q, Novosad S, Rha B, Hua H, et al
    Trends of bloodstream infection incidence rates among patients on outpatient hemodialysis, National Healthcare Safety Network, 2012-2021.
    Infect Control Hosp Epidemiol. 2025 Dec 18:1-7. doi: 10.1017/ice.2025.
    PubMed         Abstract available


    Int J Infect Dis

  2. CHOI WS, Kim KH, Kim DS, Lee SH, et al
    Increased 30-day Mortality Risk in Coronavirus Disease 2019 Compared to Seasonal Influenza.
    Int J Infect Dis. 2025 Dec 17:108312. doi: 10.1016/j.ijid.2025.108312.
    PubMed         Abstract available

  3. RODGERS MA, Averhoff F, Berg MG, Anderson M, et al
    Robust mission-driven responses to infectious disease threats delivered by the Abbott pandemic defense coalition.
    Int J Infect Dis. 2026;162:108162.
    PubMed         Abstract available


    J Med Virol

  4. WU Y, Yang C, Wei X, Xiao T, et al
    Albendazole Suppresses SARS-CoV-2 Replication by Enhancing HERC5-Mediated ISGylation of Nucleocapsid Protein.
    J Med Virol. 2025;97:e70751.
    PubMed         Abstract available


    J Virol

  5. FONSECA BF, Robinot R, Michel V, Mendez A, et al
    Stealth replication of SARS-CoV-2 Omicron in the nasal epithelium at physiological temperature.
    J Virol. 2025 Dec 19:e0200825. doi: 10.1128/jvi.02008.
    PubMed         Abstract available

  6. HAWKINS GM, Qing E, Salgado J, Chan P, et al
    A murine coronavirus infection platform identifies proviral and proinflammatory activities of SARS-CoV-2 accessory protein 7a.
    J Virol. 2025 Dec 16:e0196124. doi: 10.1128/jvi.01961.
    PubMed         Abstract available


    JAMA

  7. DEVANAND DP, Wisniewski T, Razlighi Q, Qian M, et al
    Valacyclovir Treatment of Early Symptomatic Alzheimer Disease: The VALAD Randomized Clinical Trial.
    JAMA. 2025 Dec 17:e2521738. doi: 10.1001/jama.2025.21738.
    PubMed         Abstract available

  8. MCCLYMONT E, Blitz S, Forward L, Cole S, et al
    The Role of Vaccination in Maternal and Perinatal Outcomes Associated With COVID-19 in Pregnancy.
    JAMA. 2025 Dec 15:e2521001. doi: 10.1001/jama.2025.21001.
    PubMed         Abstract available


    Lancet

  9. RUTTER H, Wabnitz K, Nambiar D, Garde A, et al
    The Lancet Commission on improving population health post-COVID-19.
    Lancet. 2025 Dec 11:S0140-6736(25)02061-6. doi: 10.1016/S0140-6736(25)02061.
    PubMed        


    Lancet Infect Dis


  10. Global burden of lower respiratory infections and aetiologies, 1990-2023: a systematic analysis for the Global Burden of Disease Study 2023.
    Lancet Infect Dis. 2025 Dec 15:S1473-3099(25)00689.
    PubMed         Abstract available

Source: 

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#Influenza and Other Respiratory Viruses Research #References (by AMEDEO, Dec. 21 '25)

 


    Antimicrob Agents Chemother

  1. LEONARD VHJ, Vidales DB, Taft BR, Hesse MJ, et al
    Identification and characterization of a novel inhibitor of influenza A virus that acts by blocking nucleoprotein oligomerization.
    Antimicrob Agents Chemother. 2025 Dec 19:e0114925. doi: 10.1128/aac.01149.
    PubMed         Abstract available


    Arch Virol

  2. BEDAIR NM, Sakr MA, Mourad A, Eissa N, et al
    Genetic characterization of highly pathogenic avian influenza A/H5N8 virus isolated from commercial poultry farms in Egypt reveals zoonotic potential.
    Arch Virol. 2025;171:29.
    PubMed         Abstract available


    Biochemistry

  3. WESTMAN H, Hammarstrom P, Nystrom S
    SARS-CoV-2 Spike Protein Amyloid Fibrils Impair Fibrin Formation and Fibrinolysis.
    Biochemistry. 2025;64:4818-4829.
    PubMed         Abstract available


    Epidemiol Infect

  4. STADHOUDERS L, Hoogteijling EM, Duijts L, Lebon A, et al
    Trends in asthma exacerbations in children before, during, and after the COVID-19 pandemic.
    Epidemiol Infect. 2025;153:e138.
    PubMed         Abstract available


    J Clin Microbiol

  5. BATAC ALR, Marks M, Tucker JD, Peeling RW, et al
    Syphilis self-testing and implications for syphilis control and prevention.
    J Clin Microbiol. 2025 Oct 21:e0098225. doi: 10.1128/jcm.00982.
    PubMed         Abstract available


    J Gen Virol

  6. EASTON V, McPhillie MJ, Santos IA, Hall P, et al
    Identification and characterization of candidate inhibitors of the SARS-CoV-2 nsp14 3'-5' exoribonuclease.
    J Gen Virol. 2025;106.
    PubMed         Abstract available


    J Infect Dis

  7. ZHU MQ, Kuan G, Maier HE, Lopez R, et al
    Stunting Increases Influenza Virus Shedding Duration in Preschool/School-Aged Children.
    J Infect Dis. 2025 Dec 18:jiaf641. doi: 10.1093.
    PubMed         Abstract available

  8. ROUPHAEL N, Tanios R, Traenkner J, Pauly MD, et al
    Feasibility and Safety of Aerosolized Influenza Virus Challenge in Humans Using Two Modern Delivery Systems.
    J Infect Dis. 2025 Dec 16:jiaf603. doi: 10.1093.
    PubMed         Abstract available


    JAMA

  9. ZAMBON M, Hayden FG
    Influenza A(H3N2) Subclade K Virus: Threat and Response.
    JAMA. 2025 Dec 18. doi: 10.1001/jama.2025.25903.
    PubMed        

  10. SCHWEITZER K
    A New H3N2 Influenza Strain Is Raising Concerns About This Flu Season.
    JAMA. 2025 Dec 19. doi: 10.1001/jama.2025.25205.
    PubMed        


    PLoS One

  11. OH YJ, Rasul ME, Lim JI, Calabrese C, et al
    Targeting anger for COVID-19 prevention: The motivating role of anger on media use and vaccination intention.
    PLoS One. 2025;20:e0338183.
    PubMed         Abstract available

  12. MUIR T, Poudyal CS, De Lima R, Otaki F, et al
    Investigating organizational resilience in a medicine and health sciences university in United Arab Emirates.
    PLoS One. 2025;20:e0338728.
    PubMed         Abstract available

  13. CORTESI M, Pendenza F, Haddon E, Schiavio A, et al
    Can creative activities and mind-body practices help enhance well-being and mental health awareness? An exploratory qualitative study in UK higher education.
    PLoS One. 2025;20:e0338938.
    PubMed         Abstract available

  14. TINNERHOLM LJUNGBERG H, Wallberg M, Aboagye E, Bergstrom G, et al
    'Wish you were here': Managers' experiences of hybrid work in higher education.
    PLoS One. 2025;20:e0339120.
    PubMed         Abstract available

  15. BERCEANU C, Bertolotti F, Arshad N, Patrascu M, et al
    Understanding the mechanisms of infodemics: Equation-based vs. agent-based models.
    PLoS One. 2025;20:e0338614.
    PubMed         Abstract available

  16. ARAUJO JIF, Batista FAM, De Souto Medeiros MR, Sena BO, et al
    The use of social media as an influence on vaccination rates: A systematic review protocol.
    PLoS One. 2025;20:e0334114.
    PubMed         Abstract available

  17. FAN J, Yang Y, Zhang F, Wu X, et al
    Analysis of molecular mechanism of Chinese medicine Jinhong decoction (JHD) in synergistically treating sepsis and COVID-19 based on network pharmacology.
    PLoS One. 2025;20:e0339457.
    PubMed         Abstract available

  18. PARK J, Shon C
    The impact of COVID-19 on walking practices in Korea: Policy implications for Urban health and physical activity resilience.
    PLoS One. 2025;20:e0338875.
    PubMed         Abstract available

  19. BRUNEKREEF J, Teslya A, Buskens V, Nunner H, et al
    Impact of adherence and stringency on the effectiveness of lockdown measures: A modelling study.
    PLoS One. 2025;20:e0338818.
    PubMed         Abstract available

  20. GYAWALI N, Caragea D, Caragea C, Mohammad SM, et al
    The shifting landscape of vaccine discourse: Insights from a decade of pre- to post-COVID-19 vaccine posts on social media.
    PLoS One. 2025;20:e0337911.
    PubMed         Abstract available

  21. SCHWARTZ AR, Tate JP, Lehmann LS, King JT Jr, et al
    Advance directives prior to COVID-19 diagnosis in a United States national healthcare system.
    PLoS One. 2025;20:e0338825.
    PubMed         Abstract available


    Proc Natl Acad Sci U S A

  22. DIAMANT ES, Yeh PJ
    Rapid morphological change in an urban bird due to COVID-19 restrictions.
    Proc Natl Acad Sci U S A. 2025;122:e2520996122.
    PubMed         Abstract available

  23. PETROVA B, Syphurs C, Culhane AJ, Chen J, et al
    MTHFR allele and one-carbon metabolic profile predict severity of COVID-19.
    Proc Natl Acad Sci U S A. 2025;122:e2509118122.
    PubMed         Abstract available


    Vaccine

  24. WANG L, Li L, Yang W, Pang X, et al
    Immunogenicity and safety of inactivated quadrivalent influenza vaccines in children aged 6-35 months: A multi-center, randomized, double-blind, active-controlled clinical trial.
    Vaccine. 2025;71:128113.
    PubMed         Abstract available

  25. YU S, Zheng B, Zhao J, Jiang L, et al
    Vaccine fatigue, perceived risk and trust: Unraveling the motivational drivers of influenza vaccination in Chinese adults using the COM-B model.
    Vaccine. 2025;72:128112.
    PubMed         Abstract available

Source: 

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Saturday, December 20, 2025

History of Mass Transportation: The Renfe Class 307 Brissonneau et Lotz Diesel-Electric Locomotive


By Thierry Leleu - Own work, CC BY-SA 3.0, https://commons.wikimedia.org/w/index.php?curid=2390060

Source: 


Link: https://commons.wikimedia.org/wiki/Category:Renfe_class_307

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Emergence of #mammalian-adaptive #PB2 #mutations enhances #polymerase activity and #pathogenicity of #cattle-derived #H5N1 #influenza A virus

 


Abstract

Highly pathogenic avian influenza H5N1 poses an increasing public health risk, particularly following its spillover into dairy cows and associated human infections in the U.S. since March 2024. Here, we systematically identified critical PB2 mutations emerged during avian-to-cattle transmission and subsequent adaptation in cattle, notably PB2 M631L, which conferred pathogenicity in mice comparable to the well-characterized PB2 E627K mutation. Retrospective analysis reveals that PB2 631L also circulated in avian and human H5N1 strains during the 2013–2014 outbreaks in Cambodia and Vietnam. Additional adaptive mutations include established markers (E627K, Q591R, D701N), and novel variants (I647V, G685R, K736R). These mutations enhance polymerase activity by improving the utilization of both bovine and human ANP32A proteins, thereby increasing viral fitness and pathogenicity in mammals. The convergence of these adaptations highlights the elevated zoonotic risk of cattle-adapted H5N1 viruses and underscores the urgent need for heightened surveillance across avian and mammalian hosts.

Source: 


Link: https://www.nature.com/articles/s41467-025-67753-x

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History of Mass Transportation: The SNCF X 5800 Renault Autorail

 


Par SylvainAmbert — Travail personnel, CC BY-SA 4.0, https://commons.wikimedia.org/w/index.php?curid=111556121

Source: 


Link: https://fr.wikipedia.org/wiki/X_5800

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#Replication and #Transmission of #Influenza A Virus in Farmed #Mink

 


Abstract

Farmed mink are frequently exposed to circulating influenza A viruses (IAVs), as confirmed by viral isolation and serological evidence. Previous work reveals that naïve mink serve as susceptible hosts for both avian and human influenza strains, highlighting their potential role in influenza ecology. In this study, we investigated whether farmed mink naturally pre-exposed to H9 retain the capacity to serve as “mixing vessels” for reassorting human and avian IAVs. Our results demonstrate that they remain fully susceptible and permissive to infection by both avian H6N6 and human H1N1 influenza strains. Notably, efficient transmission of these viruses occurred among farmed mink, confirming their potential to sustain viral exchange. These findings indicate that farmed mink represent highly permissive hosts capable of facilitating reassortment between circulating human and avian IAVs. Given this risk, current mink farming practices may substantially increase the likelihood of a pandemic emergence. We therefore urge immediate revision, stringent enhancement, and rigorous enforcement of biosecurity protocols and active surveillance systems in fur farming operations.

Source: 


Link: https://www.mdpi.com/1999-4915/18/1/9

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#Cats infected with #H5N1 avian #influenza – a new infectious disease in #Poland

 


Abstract

Avian influenza virus (AIV) infections in cats are a new and not fully understood  problem in Poland. These infections have drawn the attention of both veterinarians  and human medical practitioners, mainly because of their zoonotic  potential, i.e. possible spreading to humans and other mammals. In wild felids as  well as in domestic cats, AIV can cause severe infections, often ending in death.  Highly pathogenic avian influenza virus (HPAIV) and low pathogenic avian influenza virus (LPAIV) have been identified, with the recent H5N1 (2.3.4.4b  clade) outbreak affecting poultry, wild birds and carnivores.  Transmission likely occurs through contact with infected birds, their excretions or  contaminated raw poultry, while cat-to-cat transmission remains unconfirmed.  First reported in Thailand in 2003, H5N1 infections in cats have since occurred in  multiple countries. In Poland, 25 confirmed cases were identified in June 2023,  with genetic sequencing linking the virus to strains detected in local wild birds.  The virus primarily replicates in the lower respiratory tract, spreading via viremia  or nerve fibers, causing multi-organ failure. While avian influenza in cats is severe  and often fatal, it should not yet be considered an epidemic. Further  interdisciplinary research is essential to clarify transmission routes and assess the  zoonotic risk. Additionally, differential diagnosis should include rabies, which presents similar neurological symptoms and remains a critical public health  concern. This article presents the current knowledge of H5N1 virus infection in  cats, especially the possible routes for its spreading, the current epizootic  situation of the disease around the world, its pathogenesis, clinical course and  methods of diagnosis.

Source: 


Link: https://journals.pan.pl/dlibra/publication/157284/edition/137625/content

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#Genetic characterization of highly pathogenic avian #influenza #H5N8 virus isolated from commercial #poultry #farms in #Egypt reveals zoonotic potential

 


Abstract

Highly pathogenic avian influenza (HPAI) H5N8 virus, first identified in late 2016 in Egypt, continues to circulate and has replaced the previously dominant HPAI H5N1 virus of clade 2.2.1. In this study, HPAI H5N8 was detected on 23 commercial poultry farms in Egypt. Complete genome sequences of three isolates collected in 2021 were obtained using next-generation sequencing (NGS) and subjected to genetic characterization. Phylogenetic analysis showed these isolates to belong to clade 2.3.4.4b, comprising two genotypes: EA-2021-Q and EA-2020-A. Molecular analysis of the haemagglutinin (HA) protein revealed the presence of T156A and V538A substitutions in the duck isolate and an N183S substitution in the chicken isolate. Several additional nonsynonymous mutations were identified, including 147I and 504V in the PB2 protein, 127V, 672L, and 550L in the PA protein, 64F and 69P in the M2 protein, and 42S in the NS1 protein. Comparative analysis of HA antigenic sites between these isolates and the human vaccine against H5N8 revealed four nonsynonymous mutations: S141P, A154N, D45N, and V174I. Notably, the HA sequences of the studied isolates shared 98.7–99.4% amino acid sequence identity, and the NA sequences shared 96.1–97.1% identity to those of the 2.3.4.4b candidate human H5N8 vaccine strain (CVV) A/Astrakhan/3212/2020-like. These findings underscore the importance of continuous monitoring of the genetic evolution of avian influenza viruses to guide updates of candidate vaccine strains. Furthermore, the high similarity between the detected isolates and a zoonotic Russian H5N8 wild-type strain highlights the potential risk of cross-species transmission and possible human infection.

Source: 


Link: https://link.springer.com/article/10.1007/s00705-025-06479-z

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#USA. #Update: #Genetic Sequencing Results for #Wisconsin Dairy #Herd Detection of Highly Pathogenic Avian #Influenza #H5N1 (#USDA, Dec. 20 '25): Clade 2.3.4.4b genotype D1.1

 


WASHINGTON, D.C., December 19, 2025

On December 14, 2025, USDA’s Animal and Plant Health Inspection Service (APHIS) announced the first detection of highly pathogenic avian influenza (HPAI) in a dairy herd in Wisconsin

On December 17, the National Veterinary Services Laboratories (NVSL) completed whole genome sequencing and confirmed that the virus is H5N1 clade 2.3.4.4b genotype D1.1. 

Analysis indicates that this detection is a new spillover event from wildlife into dairy cattle, separate from previous events.


Key Points

-- Most detections in U.S. dairy herds have resulted from movements linked to the original spillover event that occurred in the Texas Panhandle in late 2023, involving the B3.13 strain.

-- In early 2025, through the National Milk Testing Strategy, USDA detected two spillover events in Nevada and Arizona dairy herds. Both were identified early, and no further herd infections occurred through animal movements. These events involved the D1.1 strain.

-- The Wisconsin herd, also detected through the National Milk Testing Strategy, represents a new, separate spillover event and involves the D1.1 strain. At this time, no additional dairy herds have been identified as infected in association with this event.


Public Health and Food Safety

-- This detection does not pose a risk to consumer health or affect the safety of the commercial milk supply. 

-- Pasteurization effectively inactivates HPAI virus, and milk from affected animals is diverted or destroyed to prevent entry into the food supply. 

-- The Centers for Disease Control and Prevention (CDC) continues to consider the risk to the public to be low.


The Importance of Biosecurity

-- USDA remains committed to working with state partners to monitor, investigate, and mitigate the spread of HPAI in livestock. 

-- The detection does not change USDA’s HPAI eradication strategy. Biosecurity is still key to mitigating the risk of disease introduction or spread between premises.

APHIS recommends enhanced biosecurity measures for all dairy farms. Producers should immediately report any livestock with clinical signs, or any unusual sick or dead wildlife, to their state veterinarian.

Source: 


Link: https://www.aphis.usda.gov/news/agency-announcements/update-genetic-sequencing-results-wisconsin-dairy-herd-detection-highly

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Friday, December 19, 2025

Highly Pathogenic Avian #Influenza: #Tracking the #Progression from IAV #H5N1 to IAV #H7N9 and Preparing for Emerging Challenges

 


Abstract

Highly Pathogenic Avian Influenza (HPAI) viruses, particularly IAV (H5N1), continue to pose a major global threat due to their widespread circulation and high mortality rates in birds. Management of HPAI is complicated by challenges in conserving migratory bird populations, sustaining poultry production, and uncertainties in disease dynamics. Structured decision-making frameworks, such as those based on the PrOACT model, are recommended to improve outbreak response and guide critical actions, especially when HPAI virus (HPAIV) detections occur in sensitive areas like wildlife refuges. Surveillance data from late 2024 to early 2025 show persistent HPAI activity, with 743 detections across 22 European countries and beyond, and notable outbreaks in poultry in nations like Hungary, Iceland, and the UK. The proximity of poultry farms to water sources increases environmental contamination risks. Meanwhile, HPAI A(IAV (H5N1)) and other H5Nx viruses have been detected in a wide range of mammalian species globally, raising concerns about mammalian adaptation due to mutations like E627K and D701N in the PB2 protein. Human infections with IAV (H5N1) have also been reported, with recent cases in North America highlighting zoonotic transmission risks. Molecular studies emphasize the importance of monitoring genetic variations associated with increased virulence and antiviral resistance. Preventive strategies focus on biosafety, personal protective measures, and vaccine development for both avian and human populations. Ongoing genetic characterization and vigilant surveillance remain critical to managing the evolving threat posed by HPAI viruses.

Source: 


Link: https://www.mdpi.com/2076-2607/14/1/12

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#USA, #Wastewater Data for Avian #Influenza #H5 (#CDC, Dec. 19 '25)

 


{Excerpt}

Time Period: December 07, 2025 - December 13, 2025 {*}

-- H5 Detection:  3 site(s) (0.7%)

-- No Detection451 site(s) (99.3%)

-- No samples in last week37 site(s)

{*} Note: The H5 detection at site 2030 in Virginia is a result of a data error and is a false detection. This will be corrected in the next update.




(...)

Source: 


Link: https://www.cdc.gov/nwss/rv/wwd-h5.html

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#Sweden - High pathogenicity avian #influenza #H5N1 viruses (#poultry) (Inf. with) - Immediate notification



{Höör Region} A farm with parent poultry. All animals were euthanized 18 December. A protection zone (3 km) and a surveillance zone (10 km) have been put in place around the infected farm and all other restrictions and necessary measures according to Regulation (EU) 2016/429 and EU DR 2020/687 are applied.

Source: 


Link: https://wahis.woah.org/#/in-review/7136

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#Poland - High pathogenicity avian #influenza #H5N1 viruses (#poultry) (Inf. with) - Immediate notification

 


A poultry farm in Łódzkie Region.

Source: 


Link: https://wahis.woah.org/#/in-review/7137

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A #pandemic #toolbox for clade 2.3.4.4b #H5N1 #influenza virus #risk #assessment

 


{Excerpt}

Since 1997, more than 1000 cases of highly pathogenic avian influenza A(H5N1) have been reported in humans. During this time, A(H5N1) viruses have evolved into dozens of clades, showing ever-expanding phylogenetic diversification and geographical spread. Over the past 5 years, clade 2.3.4.4b A(H5N1) viruses have exhibited rapid global expansion in migratory birds, with spillover to an increasing range of marine and terrestrial mammalian species. Among these species are dairy cattle, not previously recognised as a permissive host for influenza A viruses (IAV), leading to widespread clade 2.3.4.4b A(H5N1) outbreaks in herds in the USA and sporadic human infections linked with exposure to infected animals since March 2024. While person-to-person transmission has not been detected in the USA, the increased geographical distribution of and susceptibility of mammalian hosts to clade 2.3.4.4b A(H5N1) viruses has brought to the forefront a need to assess the pandemic risk posed by these viruses.

(...)

Source: 


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Attachment and #replication of clade 2.3.4.4b #influenza #H5N1 viruses in #human respiratory #epithelium: an in-vitro study

 


Summary

Background

Highly pathogenic avian influenza H5N1 viruses of the A/Goose/Guangdong/1/1996 lineage pose a global threat to wildlife, domestic animals, and humans. Cross-species transmission events to mammals, including humans, in the past 4 years highlight this threat. For influenza A viruses, crucial determinants of cross-species and intraspecies transmission to and among mammals include attachment to and replication in respiratory airway epithelial cells. Although these determinants have been studied for H5N1 viruses in the past, limited studies for clade 2.3.4.4b viruses exist. Therefore, the aim of this study was to determine the ability of recent clade 2.3.4.4b H5N1 viruses to attach to human respiratory tissues, to replicate in human airway epithelial cells and the associated immune response.

Methods

In this in-vitro study, we investigated three H5N1 clade 2.3.4.4b viruses (H5N1Gull2022, H5N1Polecat2022, and H5N1Bovine2024) in comparison with previously studied 2.1.3.2 H5N1 (H5N12005) and a seasonal H3N2 virus. First, we compared virus attachment patterns by virus histochemistry. Second, we investigated the infection and replication efficiency, and innate immune responses in infected human respiratory epithelium in vitro. Third, we measured polymerase complex activity using a minigenome assay.

Findings

Clade 2.3.4.4b viruses and H5N12005 virus differed by five amino acids located near the receptor binding site of the haemagglutinin. All clade 2.3.4.4b viruses attached more efficiently to cells of the human upper and lower respiratory tract compared with H5N12005 virus. All clade 2.3.4.4b viruses replicated in human nasal and tracheobronchial respiratory epithelium cultures. In the tracheobronchial respiratory epithelium cultures, H5N1Gull2022 virus replicated more efficiently than H5N12005 virus (p=0·0050) and reached titres similar to H3N22003 virus. Polymerase complex activity of H5N1Gull2022 virus was not significantly different from that of H5N12005 and was significantly lower compared with H3N22003 virus (p≤0·0001). Infection with H5N1Gull2022 virus induced a broader antiviral immune response than H5N12005 virus.

Interpretation

Clade 2.3.4.4b H5N1 viruses have phenotypic characteristics that are different from a clade 2.1.3.2 H5N12005 virus. The ability of clade 2.3.4.4b viruses to attach to and replicate in respiratory epithelium likely contributes to an increased risk for both human infection and virus adaptation to humans.

Funding

The EU, the Dutch Research Council, the Netherlands Organization for Health Research and Development, and the Dutch Ministries of Agriculture, Fisheries, Food Security and Nature, and Health, Welfare and Sport.

Source: 


Link: https://www.thelancet.com/journals/lanmic/article/PIIS2666-5247(25)00158-2/fulltext

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Thursday, December 18, 2025

#Statement on the #antigen #composition of #COVID19 #vaccines (#WHO, Dec. 18 '25)

 


Key points:

-- The WHO Technical Advisory Group on COVID-19 Vaccine Composition (TAG-CO-VAC) held its twice-yearly decision-making meeting in December 2025 to review the evolution of SARS-CoV-2, the performance of currently approved COVID-19 vaccines and the implications for COVID-19 vaccine antigen composition.

-- The objective of an update to COVID-19 vaccine antigen composition is to enhance vaccine-induced immune responses to circulating SARS-CoV-2 variants.

-- Following this meeting, the TAG-CO-VAC advises vaccine manufacturers that monovalent LP.8.1 is the recommended vaccine antigen.

-- The previously recommended JN.1 lineage (JN.1 or KP.2) antigens remain suitable alternatives and vaccination should not be delayed in anticipation of access to vaccines with the LP.8.1 composition.

-- Other approaches that demonstrate broad and robust neutralizing antibody responses or efficacy against currently circulating SARS-CoV-2 variants could also be considered.

-- Vaccination remains an important public health countermeasure against COVID-19. As per the WHO Director General’s standing recommendations for COVID-19, Member States are recommended to continue to offer COVID-19 vaccination based on the recommendations of the WHO Strategic Advisory Group of Experts on Immunization (SAGE).


The WHO Technical Advisory Group on COVID-19 Vaccine Composition (TAG-CO-VAC) continues to closely monitor the genetic and antigenic evolution of SARS-CoV-2 variants, immune responses to SARS-CoV-2 infection and COVID-19 vaccination, and the performance of COVID-19 vaccines against circulating variants. 

Based on these evaluations, WHO advises vaccine manufacturers and regulatory authorities on the implications for future updates to COVID-19 vaccine antigen composition. 

In May 2025, the TAG-CO-VAC recommended that monovalent JN.1 or KP.2 remain appropriate vaccine antigens and that monovalent LP.8.1 is a suitable alternative vaccine antigen

Multiple manufacturers (using mRNA or recombinant protein-based vaccines) have updated COVID-19 vaccine antigen composition to monovalent JN.1 lineage formulations (JN.1, KP.2 or LP.8.1). 

Several of these vaccines have been approved for use by regulatory authorities and have been introduced into vaccination programmes. Previous statements from the TAG-CO-VAC can be found on the WHO website.

The TAG-CO-VAC reconvened on 8-9 December 2025 to review: 

- the genetic and antigenic evolution of SARS-CoV-2; 

- immune responses to SARS-CoV-2 infection and/or COVID-19 vaccination; 

- the performance of currently approved vaccines against circulating SARS-CoV-2 variants; and 

- the implications for COVID-19 vaccine antigen composition.


Evidence reviewed

The published and unpublished evidence reviewed by the TAG-CO-VAC included: 

-- (1) SARS-CoV-2 genetic evolution with additional support from the WHO Technical Advisory Group on Virus Evolution (TAG-VE); 

-- (2) Antigenic characterization of previous and emerging SARS-CoV-2 variants using virus neutralization tests with animal antisera and further analysis of antigenic relationships using antigenic cartography; 

-- (3) Immunogenicity data on the breadth of neutralizing antibody responses elicited by currently approved vaccine antigens against circulating SARS-CoV-2 variants using animal and human sera; 

-- (4) Preliminary clinical immunogenicity data on immune responses following infection with circulating SARS-CoV-2 variants; 

-- (5) Available relative vaccine effectiveness (VE) estimates of currently approved vaccines during periods of JN.1 lineage circulation; and 

-- (6) Preliminary non-clinical and clinical immunogenicity data on the performance of candidate vaccines with updated antigens shared confidentially by vaccine manufacturers with TAG-CO-VAC. 

Further details on the data reviewed by the TAG-CO-VAC can be found in the accompanying data annex. Confidential data reviewed by the TAG-CO-VAC are not shown.


Summary of available evidence

-- There are persistent and increasing gaps in the reporting of cases, hospitalizations and deaths, from WHO Member States, limiting the interpretation of epidemiological trends. 

-- Nonetheless, in 2025, SARS-CoV-2 continues to circulate globally, causing severe disease, post COVID-19 condition, and death

-- Globally, the majority of COVID-19 deaths continue to occur in individuals aged 65 years and older and those with underlying comorbidities.

-- As of early December 2025, most circulating SARS-CoV-2 variants worldwide remain derived from JN.1

-- In most regions, SARS-CoV-2 Variant Under Monitoring (VUM) XFG is the predominant variant among SARS-CoV-2 sequences submitted to GISAID, typically accounting for 70-80% of all variants reported. 

-- In contrast, in several countries in the WHO Western Pacific Region in which SARS-CoV-2 sequencing continues, VUM NB.1.8.1 has been the most recent predominant variant, with XFG detected at lower levels. 

-- VUM BA.3.2, first detected in November 2024, continues to be detected at low levels globally; however, higher levels have been reported in limited geographic areas, particularly in wastewater and clinical samples in Western Australia

-- The proportions of JN.1 (Variant of Interest) and all other VUMs (KP.3.1.1 and LP.8.1) are declining and are now detected at low levels.

-- Published and unpublished neutralization data using antisera from naïve mice and hamsters infected with JN.1 or XFG, as well as mice immunized with mRNA vaccine antigens JN.1, LP.1.8.1, NB.1.8.1 or XFG, indicate that recent JN.1-derived variants are antigenically closely related. These variants differ by approximately 1 antigenic unit in cartographic analyses, corresponding to a two-fold-difference in neutralization, with XFG often the most antigenically distant from JN.1 within the JN.1 cluster. In contrast, these antisera showed limited neutralization activity against BA.3.2, indicating that BA.3.2 is antigenically distinct from circulating JN.1-derived variants.

-- Sera collected in 2025 from individuals with prior SARS-CoV-2 infection or COVID-19 vaccination showed a moderate reduction in neutralizing antibody titers against BA.3.2, as compared to those against JN.1 and LP.8.1.

-- Published and unpublished human serological data of pre- and post-vaccination sera from individuals immunized with JN.1 or KP.2 demonstrated significant increases in neutralizing activity against JN.1 and its descendent lineages. Post-vaccination neutralizing antibody titers against NB.1.8.1 and XFG were lower than those against the homologous JN.1 or KP.2 antigens, with even larger reductions observed for BA.3.2.

-- Pre- and post-vaccination sera from individuals immunized with LP.8.1 demonstrated significant increases in neutralizing activity against JN.1 and its descendent lineages, including NB.1.8.1 and XFG. Post-vaccination neutralizing antibody titers against BA.3.2 were lower than against the homologous LP.8.1 antigen and other JN.1-derived variants.

-- Contemporary vaccine effectiveness (VE) estimates are relative (rVE), rather than absolute (comparing vaccinated to unvaccinated individuals), and demonstrate the added or incremental protection of recent vaccination over and above pre-existing infection- and vaccine-derived immunity. Monovalent JN.1 and KP.2 mRNA vaccines demonstrated additional protection—relative to pre-existing immunity—against symptomatic and severe COVID-19. There are currently no studies reporting VE or rVE estimates using monovalent LP.8.1 vaccines.

-- Data shared confidentially with the TAG-CO-VAC by vaccine manufacturers showed that:

- Immunization of naïve mice and mice previously immunized with SARS-CoV-2 variants with monovalent JN.1 elicited high neutralizing antibody titers against JN.1, XEC, LP.8.1, NB.1.8.1. Neutralization titers against XFG were typically lower than those against the homologous immunizing antigen, with further reductions observed against BA.3.2.

- Immunization of naïve mice and mice previously immunized with SARS-CoV-2 variants with monovalent LP.8.1 induced high neutralizing antibody titers against the homologous antigen, JN.1, NB.1.8.1 and XFG. Reductions in antibody titers were consistently observed against BA.3.2.

-- In humans, vaccination with monovalent JN.1 elicited robust neutralizing antibody responses against JN.1, XEC, LP.8.1 and NB.1.8.1. As observed in mice, post-monovalent JN.1 vaccination neutralizing antibody titers against XFG and BA.3.2 were lower than those against the homologous JN.1 antigen. Vaccination with 8.1 induced strong increases in neutralizing antibody titers against JN.1, LP.8.1, NB.1.8.1 and XFG. As in mice, post-monovalent LP.8.1 vaccination neutralizing antibody titers against BA.3.2 were lower than those against the homologous LP.8.1 antigen.

-- Overall, LP.8.1 as a vaccine antigen offers modestly but significantly increased cross-reactive antibody responses to currently circulating JN.1-derived variants, as compared to monovalent JN.1 or KP.2 vaccines.

The TAG-CO-VAC acknowledges several limitations of available data: 

-- There are persistent and increasing gaps in the reporting of cases, hospitalizations and deaths, from WHO Member States, as well as in genetic/genomic surveillance of SARS-CoV-2 globally, including low numbers of samples sequenced and limited geographic diversity. The TAG-CO-VAC strongly supports the ongoing work of the WHO Coronavirus Network (CoViNet) and the Global Influenza Surveillance and Response System (GISRS) to address this information gap.

-- The timing, specific mutations and antigenic characteristics of emerging and future variants are difficult to predict, and the potential public health impact of these variants remain unknown. While most circulating variants are currently derived from JN.1, there are long branch saltation variants, such as BA.3.2, that are currently detected in low proportions of SARS-CoV-2 variants sequenced globally. Available data indicate that BA.3.2 does not currently exhibit a clear fitness advantage over JN.1-derived variants; however, its future evolutionary potential remains uncertain. These variants will continue to be monitored and/or characterized and the TAG-CO-VAC strongly supports the ongoing work of the TAG-VE. 

-- Although neutralizing antibody titers have been shown to be important correlates of protection from SARS-CoV-2 infection and of estimates of vaccine effectiveness, there are multiple components of immune protection elicited by infection and/or vaccination. Data on the immune responses following JN.1 descendent lineage infection or monovalent JN.1, KP.2 or LP.8.1 vaccination are largely restricted to neutralizing antibodies. Data and interpretation of other aspects of the immune response, including cellular immunity, are limited. 

-- Immunogenicity data against currently circulating SARS-CoV-2 variants are not available for all COVID-19 vaccines. 

-- Estimates of rVE against recently circulating JN.1 variants are limited in terms of the number of studies, geographic diversity, vaccine platforms evaluated, populations assessed, duration of follow-up, and contemporary comparisons of vaccines with different antigen composition.


Recommendations for COVID-19 vaccine antigen composition

-- Monovalent LP.8.1 (NextStrain: 25A; GenBank: PV074550.1; GISAID: EPI_ISL_19467828) is the recommended COVID-19 vaccine antigen.

-- As vaccination should not be delayed in anticipation of access to vaccines with an LP.8.1 composition, previously recommended JN.1 lineage (JN.1 or KP.2) antigens remain suitable alternatives.

Other approaches that demonstrate broad and robust neutralizing antibody responses or efficacy against currently circulating SARS-CoV-2 variants could also be considered.

As per the WHO Director General’s standing recommendations for COVID-19, Member States are recommended to continue to offer COVID-19 vaccination based on the recommendations of the WHO SAGE.


Further data requested

Given the limitations of the evidence upon which the recommendations above are derived and the anticipated continued evolution of the virus, the TAG-CO-VAC strongly encourages generation of the following data (in addition to the types of data outlined in September 2025): 

-- Immune responses and clinical endpoints (i.e. VE and/or comparator rates of infection and severe disease) in varied human populations who receive currently approved COVID-19 vaccines against emerging SARS-CoV-2 variants, across different vaccine platforms.

-- Strengthened epidemiological and virological surveillance, as per the Standing Recommendations for COVID-19 in accordance with the International Health Regulations (2005), to determine if emerging variants are antigenically distinct and able to displace circulating variants.

-- Strengthened epidemiological surveillance to characterize disease severity in immunologically naïve and/ or immature individuals (i.e. birth cohorts).

-- Non-clinical and clinical immunogenicity data against circulating SARS-CoV-2 variants for vaccine candidates with different SARS-CoV-2 antigens, such as BA.3.2.

-- As previously stated, the TAG-CO-VAC continues to encourage the further development of vaccines that may improve protection against infection and reduce transmission of SARS-CoV-2.

-- The TAG-CO-VAC will continue to closely monitor the genetic and antigenic evolution of SARS-CoV-2 variants, immune responses to SARS-CoV-2 infection and COVID-19 vaccination, and the performance of COVID-19 vaccines against circulating variants. The TAG-CO-VAC will also continue to reconvene every six months, or as needed, to evaluate the implications for COVID-19 vaccine antigen composition. At each meeting, recommendations to either maintain current vaccine composition or to consider updates will be issued. Prior to each meeting, the TAG-CO-VAC will publish an update to the statement on the types of data requested to inform COVID-19 vaccine antigen composition deliberations.

Source: 


Link: https://www.who.int/news/item/18-12-2025-statement-on-the-antigen-composition-of-covid-19-vaccines

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The #epidemiology of #pathogens with #pandemic potential: A review of key #parameters and clustering analysis

 


Highlights

• Epidemiological parameters differ by pathogen and by setting.

• Unsupervised machine learning classifies pathogens into distinct epidemiological archetypes.

• Pathogens can be allocated into defined groups outlining plausible parameter ranges across epidemiologically similar pathogens.


Abstract

Introduction

In the light of the COVID-19 pandemic many countries are trying to widen their pandemic planning from its traditional focus on influenza. However, it is impossible to draw up detailed plans for every pathogen with epidemic potential. We set out to try to simplify this process by reviewing the epidemiology of a range of pathogens with pandemic potential and seeing whether they fall into groups with shared epidemiological traits.

Methods

We reviewed the epidemiological characteristics of 19 different pathogens with pandemic potential (those on the WHO priority list of pathogens, different strains of influenza and Mpox). We extracted data on key parameters (reproduction number serial interval, proportion of presymptomatic transmission, case fatality risk and transmission route) and applied an unsupervised learning algorithm. This combined Monte Carlo sampling with ensemble clustering to classify pathogens into distinct epidemiological archetypes based on their shared characteristics.

Results

From 154 articles we extracted 302 epidemiological parameter estimates. The clustering algorithms categorise these pathogens into six archetypes (1) highly transmissible Coronaviruses, (2) moderately transmissible Coronaviruses, (3) high-severity contact and zoonotic pathogens, (4) Influenza viruses (5) MERS-CoV-like and (6) MPV-like.

Conclusion

Unsupervised learning on epidemiological data can be used to define distinct pathogen archetypes. This method offers a valuable framework to allocate emerging and novel pathogens into defined groups to evaluate common approaches for their control.

Source: 


Link: https://www.sciencedirect.com/science/article/pii/S1755436525000702?via%3Dihub

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#Airway #organoids reveal #patterns of #Influenza A tropism and #adaptation in #wildlife species

 


Abstract

Identifying animal species that are susceptible to the plethora of existing and emerging viruses is critical for predicting and containing disease outbreaks. Current efforts to assess viral tropism largely rely on experimental infection models, but such experiments are logistically and ethically infeasible for many wildlife species. To tackle this challenge, we developed a panel of airway organoids from ten taxonomically diverse wildlife and livestock species and evaluated their susceptibility to influenza viruses of mammalian (pH1N1) and avian (H5N1) origin. Our analyses revealed large species-specific differences in infection rate and cytopathogenicity that aligned with known in vivo data and field observations. Furthermore, we demonstrated that this organoid panel can serve as a powerful tool to elucidate receptor-binding mechanisms, viral dynamics, and early host adaptation in poorly characterized animal species. In summary, this work provides a robust and ethically viable approach for evaluating viral tropism and adaptation in wildlife species, and fills a critical gap in current pandemic preparedness, zoonotic disease surveillance, and wildlife conservation efforts.


Competing Interest Statement

The authors have declared no competing interest.


Funder Information Declared

Ministerio de Ciencia, Innovación y Universidades, https://ror.org/05r0vyz12, PLEC2022-009171, RYC2021-033035-I, PID2023-147498OB-I00, JDC2023050389-I

European Commission, HORIZON-HLTH-2021 CORONA-01, HORIZON-HLTH-2023-DISEASE-03

CERCA Institution, https://ror.org/01bkbaq61

Source: 


Link: https://www.biorxiv.org/content/10.64898/2025.12.17.694819v1

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Wednesday, December 17, 2025

Isolation and subtyping of avian #influenza A virus from wild #birds in #Khartoum, #Sudan

 


Abstract

Avian influenza (AI) is a significant disease affecting chickens and other avian species. Wild birds are thought to contribute to the virus transmission. The present study intends to explore the existence of AI type A virus in wild birds at the Six April Zoo, Khartoum State, Sudan. A total of 42 cloacal and tracheal swabs were collected from clinically healthy individuals belonging to five different wild bird species. The selected wild bird species were Common crane Grus grus, Sudan crowned crane Balearica pavonina, Helmeted guinea fowl Numida meleagris, Duck sp. Anatidae and Chestnut-billed sand grouse Pterocles exustus. Swabs were examined for AI virus antigen using the agar gel immunodiffusion (AGID) test, and all tested swabs produced positive results. The swab samples were inoculated into embryonated chicken eggs. The isolated virus was identified by AGID test and polymerase chain reaction. The virus was isolated from swabs collected from Grus grus, Balearica pavonina, Numida meleagris, Duck sp. Anatidae and Pterocles exustus. Subtyping of the isolated viruses was performed using reverse transcriptase-polymerase chain reaction, which identified the H5 subtype.

Source: 


Link: https://ojvr.org/index.php/ojvr/article/view/2228

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#MERS-COV in the Middle East, a #OneHealth #concept approach

 


Abstract

The MERS-COV virus is a zoonotic coronavirus that emerged in 2012 in KSA and caused viral illness with a case fatality rate up to 35 %. Over a decade later, the virus is still evolving and circulating. The aim of this review is to discuss the current epidemiology of MERS-COV both in humans and animals, during and post the COVID-19 pandemic. We have found that MERS-COV is still evolving in camels with new lineages being detected in Saudi Arabia. Although the number of human cases has decreased, there is a gradual resurgence in the number of cases. Furthermore, many cases are being reported without exposure to camels and/or raw products, nor contact with known human cases. This necessitates global efforts in the surveillance of asymptomatic carriers in the community, role of unknown animal reservoirs in the virus spread if any, as well as extensive genomic surveillance of the virus. This is in order to unveil and assess the genetic changes that the virus is undergoing and their according effect on the viral fitness, tropism, and virulence. These efforts are crucial for potential future pandemic preparedness, understanding the modes of transmission, as well as drug and vaccine development for MERS-COV.

Source: 


Link: https://www.sciencedirect.com/science/article/pii/S2352771425003180?via%3Dihub

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