Friday, December 27, 2024

Highly Pathogenic Avian #Influenza A(#H5N1) Virus: Interim #Recommendations for #Prevention, #Monitoring, and Public Health #Investigations

{Summary as of December 26 '24}

What to know

-- This guidance outlines CDC’s recommendations for preventing human exposures to highly pathogenic avian influenza (HPAI) A(H5N1) viruses and infection prevention and control measures, including the use of personal protective equipment, testing, antiviral treatment, patient investigations, monitoring of exposed persons, and antiviral chemoprophylaxis of exposed persons.


Summary

The purpose of this guidance is to outline CDC's recommendations for preventing exposures to highly pathogenic avian influenza (HPAI) A(H5N1) viruses, infection prevention and control measures including the use of personal protective equipment, testing, antiviral treatment, patient investigations, monitoring of exposed persons (including persons exposed to sick or dead wild and domesticated animals and livestock with suspected or confirmed infection with highly pathogenic avian influenza (HPAI) A(H5N1) virus), and antiviral chemoprophylaxis of exposed persons. These recommendations are based on available information and will be updated as needed when new information becomes available.

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Source: US Centers for Disease Control and Prevention, https://www.cdc.gov/bird-flu/prevention/hpai-interim-recommendations.html

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#Genetic #Sequences of Highly Pathogenic Avian #Influenza A(#H5N1) Viruses Identified in a Person in #Louisiana

What to know

-- CDC has sequenced the influenza viruses in specimens collected from the patient in Louisiana who was infected with, and became severely ill from HPAI A(H5N1) virus. 

-- The genomic sequences were compared to other HPAI A(H5N1) sequences from dairy cows, wild birds and poultry, as well as previous human cases and were identified as the D1.1 genotype

-- The analysis identified low frequency mutations in the hemagglutinin gene of a sample sequenced from the patient, which were not found in virus sequences from poultry samples collected on the patient’s property, suggesting the changes emerged in the patient after infection.


Background

This is a technical summary of an analysis of the genomic sequences of the viruses identified in two upper respiratory tract specimens from the patient who was severely ill from an infection with highly pathogenic avian influenza (HPAI) A(H5N1) virus in Louisiana

The patient was infected with A(H5N1) virus of the D1.1 genotype virus that is closely related to other D1.1 viruses recently detected in wild birds and poultry in the United States and in recent human cases in British Columbia, Canada, and Washington State

This avian influenza A(H5N1) virus genotype is different from the B3.13 genotype spreading widely and causing outbreaks in dairy cows, poultry, and other animals, with sporadic human cases in the United States. 

Deep sequencing of the genetic sequences from two clinical specimens from the patient in Louisiana was performed to look for changes associated with adaptation to mammals. 

There were some low frequency changes in the hemagglutinin (HA) gene segment of one of the specimens that are rare in people but have been reported in previous cases of A(H5N1) in other countries and most often during severe infections. 

One of the changes found was also identified in a specimen collected from the human case with severe illness detected in British Columbia, Canada, suggesting they emerged during the clinical course as the virus replicated in the patient. 

Analysis of the N1 neuraminidase (NA), matrix (M) and polymerase acid (PA) genes from the specimens showed no changes associated with known or suspected markers of reduced susceptibility to antiviral drugs.


CDC Update

December 26, 2024 – CDC has sequenced the HPAI A(H5N1) avian influenza viruses in two respiratory specimens collected from the patient in Louisiana who was severely ill from an A(H5N1) virus infection. 

CDC received two specimens collected at the same time from the patient while they were hospitalized for severe respiratory illness: a nasopharyngeal (NP) and combined NP/oropharyngeal (OP) swab specimens. 

Initial attempts to sequence the virus from the patient's clinical respiratory specimens using standard RNA extraction and multisegment-RTPCR (M-RTPCR)1 techniques yielded only partial genomic data and virus isolation was not successful. 

Nucleic acid enrichment was needed to sequence complete genomes with sufficient coverage depth to meet quality thresholds. 

CDC compared the influenza gene segments from each specimen with A(H5N1) virus sequences from dairy cows, wild birds, poultry and other human cases in the U.S. and Canada. 

The genomes of the virus (A/Louisiana/12/2024) from each clinical specimen are publicly posted in GISAID (EPI_ISL_19634827 and EPI_ISL_19634828) and GenBank (PQ809549-PQ809564).


Summary of amino acid mixtures identified in the hemagglutinin (HA) of clinical specimens from the patient.

Overall, the hemagglutinin (HA) sequences from the two clinical specimens were closely related to HA sequences detected in other D1.1 genotype viruses, including viruses sequenced from samples collected in November and December 2024 in wild birds and poultry in Louisiana

The HA genes of these viruses also were closely related to the A/Ezo red fox/Hokkaido/1/2022 candidate vaccine virus (CVV) with 2 or 3 amino acid changes detected. 

These viruses have, on average, 3 or 4 amino acid changes in the HA when compared directly to the A/Astrakhan/3212/2020 CVV sequence

These data indicate the viruses detected in respiratory specimens from this patient are closely related to existing HPAI A(H5N1) CVVs that are already available to manufacturers, and which could be used to make vaccines if needed.

There were some differences detected between the NP/OP and the NP specimens. 

Despite the very close similarity of the D1.1 sequences from the Louisiana human case to bird viruses, deep sequence analysis of the HA gene segment from the combined NP/OP sample detected low frequency mixed nucleotides corresponding to notable amino acid residues (using mature HA sequence numbering):

-- A134A/V [Alanine 88%, Valine 12%];

- N182N/K [Asparagine 65%, Lysine 35%]; and

- E186E/D [Glutamic acid 92%, Aspartic Acid 8%].

The NP specimen, notably, did not have these low frequency changes indicating they may have been detected from swabbing the oropharyngeal cavity of the patient. 

While these low frequency changes are rare in humans, they have been reported in previous cases of A(H5N1) in other countries and most often during severe disease2345. 

The E186E/D mixture, for example, was also identified in a specimen collected from the severe human case detected in British Columbia, Canada67.

This summary analysis focuses on mixed nucleotide detections at residues A134V, N182K, E186D as these changes may result in increased virus binding to α2-6 cell receptors found in the upper respiratory tract of humans

It is important to note that these changes represent a small proportion of the total virus population identified in the sample analyzed (i.e., the virus still maintains a majority of 'avian' amino acids at the residues associated with receptor binding). 

The changes observed were likely generated by replication of this virus in the patient with advanced disease rather than primarily transmitted at the time of infection. 

Comparison of influenza A(H5) sequence data from viruses identified in wild birds and poultry in Louisiana, including poultry identified on the property of the patient, and other regions of the United States did not identify these changes. 

Of note, virus sequences from poultry sampled on the patient's property were nearly identical to the virus sequences from the patient but did not have the mixed nucleotides identified in the patient's clinical sample, strongly suggesting that the changes emerged during infection as virus replicated in the patient. 

Although concerning, and a reminder that A(H5N1) viruses can develop changes during the clinical course of a human infection, these changes would be more concerning if found in animal hosts or in early stages of infection (e.g., within a few days of symptom onset) when these changes might be more likely to facilitate spread to close contacts. 

Notably, in this case, no transmission from the patient in Louisiana to other persons has been identified. 

The Louisiana Department of Public Health and CDC are collaborating to generate additional sequence data from sequential patient specimens to facilitate further genetic and virologic analysis.


Additional genomic analysis

The genetic sequences of the A(H5N1) viruses from the patient in Louisiana did not have the PB2 E627K change or other changes in polymerase genes associated with adaptation to mammals and no evidence of low frequency changes at critical positions. 

And, like other D1.1 genotype viruses found in birds, the sequences lack PB2 M631L, which is associated with viral adaptation to mammalian hosts, and which has been detected in >99% of dairy cow sequences but is only sporadically found in birds. 

Analysis of the N1 neuraminidase (NA), matrix (M) and polymerase acid (PA) genes from the specimens showed no changes associated with known or suspected markers of reduced susceptibility to antiviral drugs. 

The remainder of the genetic sequences of A/Louisiana/12/2024 were closely related to sequences detected in wild bird and poultry D1.1 genotype viruses, including poultry identified on the property of the patient, providing further evidence that the human case was most likely infected following exposure to birds infected with D1.1 genotype virus.


Follow Up Actions

Overall, CDC considers the risk to the general public associated with the ongoing U.S. HPAI A(H5N1) outbreak has not changed and remains low

The detection of a severe human case with genetic changes in a clinical specimen underscores the importance of ongoing genomic surveillance in people and animals, containment of avian influenza A(H5) outbreaks in dairy cattle and poultry, and prevention measures among people with exposure to infected animals or environments.

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Source: US Centers for Disease Control and Prevention, https://www.cdc.gov/bird-flu/spotlights/h5n1-response-12232024.html

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Thursday, December 26, 2024

Recurring #incursions and #dissemination of novel #Eurasian-origin #H5Nx avian #influenza viruses in Atlantic #Canada

Abstract

Wild birds are important hosts of influenza A viruses (IAVs) and play an important role in their ecology. The emergence of the A/goose/Guangdong/1/1996 H5N1 (Gs/GD) lineage marked a shift in IAV ecology, leading to recurrent outbreaks and mortality in wild birds from 2002 onwards. This lineage has evolved and diversified over time, with a recent important derivative being the 2.3.4.4b sub-lineage, which has caused significant mortality events in wild bird populations. An H5N1 clade 2.3.4.4b virus was transmitted into North America from Eurasia in 2021, with the first detection being in Newfoundland and Labrador in Atlantic Canada, and this virus and its reassortants then spread broadly throughout North America and beyond. Following the first 2021 detection, there have been three additional known incursions of Eurasian-origin strains into Atlantic Canada, a second H5N1 strain in 2022 and two H5N5 strains in 2023. In this study, we document a fifth incursion in Atlantic Canada that occurred in 2023 by another H5N5 strain. This strain spread throughout Atlantic Canada and into Quebec, infecting numerous species of wild birds and mammals. Genomic analysis revealed mammalian-adaptive mutations in some of the detected viruses (PB2-E627K and PB2-D701N) and mutations in the hemagglutinin (HA) and neuraminidase (NA) genes that are associated with enhanced viral fitness and avian transmission capabilities. Our findings indicate that this virus is continuing to circulate in wildlife, and confirms Atlantic Canada is an important North American entry point for Eurasian IAVs. Continued surveillance and genomic analysis of IAVs detected in the region is crucial to monitor the evolution of these viruses and assess potential risks to wildlife and public health.

Source: Virus Evolution, https://academic.oup.com/ve/article/10/1/veae111/7926332

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Introducing a #framework for within-host dynamics and #mutations modelling of #H5N1 #influenza #infection in #humans

Abstract

Avian influenza A(H5N1) poses a public health risk due to its pandemic potential should the virus mutate to become human-to-human transmissible. To date, reported influenza A(H5N1) human cases have typically occurred in the lower respiratory tract with a high case fatality rate. There is prior evidence of some influenza A(H5N1) strains being a small number of amino acid mutations away from achieving droplet transmissibility, possibly allowing them to be spread between humans. We present a mechanistic within-host influenza A(H5N1) infection model, novel for its explicit consideration of the biological differences between the upper and lower respiratory tracts. We then estimate a distribution of viral lifespans and effective replication rates in human H5N1 influenza cases. By combining our within-host model with a viral mutation model, we determine the probability of an infected individual generating a droplet transmissible strain of influenza A(H5N1) through mutation. For three mutations, we found a peak probability of approximately 10-3 that a human case of H5N1 influenza produces at least one virion during the infectious period. Our findings provide insights into the risk of differing infectious pathways of influenza A(H5N1) (namely avian-human vs avian-mammal-human routes), demonstrating the three-mutation pathway being a cause of concern in human cases.

Source: MedRxIV, https://www.medrxiv.org/content/10.1101/2024.09.01.24312235v2

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#Detection and #Phylogenetic Characterization of #Influenza D in Swedish #Cattle

Abstract

Increased evidence suggests that cattle are the primary host of Influenza D virus (IDV) and may contribute to respiratory disease in this species. The aim of this study was to detect and characterise IDV in the Swedish cattle population using archived respiratory samples. This retrospective study comprised a collection of a total 1763 samples collected between 1 January 2021 and 30 June 2024. The samples were screened for IDV and other respiratory pathogens using real-time reverse transcription quantitative PCR (rRT-qPCR). Fifty-one IDV-positive samples were identified, with a mean cycle threshold (Ct) value of 27 (range: 15–37). Individual samples with a Ct value of <30 for IDV RNA were further analysed by deep sequencing. Phylogenetic analysis was performed by the maximum likelihood estimation method on the whole IDV genome sequence from 16 samples. The IDV strains collected in 2021 (n = 7) belonged to the D/OK clade, whereas samples from 2023 (n = 4) and 2024 (n = 5) consisted of reassortants between the D/OK and D/660 clades, for the PB2 gene. This study reports the first detection of IDV in Swedish cattle and the circulation of D/OK and reassortant D/OK-D/660 in this population.

Source: Viruses, https://www.mdpi.com/1999-4915/17/1/17

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#USA, #Birdflu tightens grip on #California as #human cases rise

 {Excerpts}

SACRAMENTO, the United States -- California's battle against avian influenza A (H5N1) intensified amid spreading infections across dairy farms and a growing number of human infection, including two newly confirmed cases in Stanislaus and Los Angeles counties.

The virus, commonly known as bird flu, has infected 659 of California's 984 dairy operations since August, with one-quarter of these cases emerging in the past month alone, according to California authorities.

The rapid spread through the state's dairy industry prompted Governor Gavin Newsom to declare a state of emergency last week to protect agricultural workers and public health.

(...)

The outbreak's human impact has grown increasingly severe, with California reporting at least 36 confirmed cases -- more than half of the nation's total of 65, according to the latest report by the U.S. Centers for Disease Control (CDC) on Tuesday, though the actual count is likely higher as recent local confirmations may not yet be reflected in federal data.

Two new cases were confirmed Monday in California's Los Angeles County and Stanislaus County. Both individuals were exposed to livestock infected with bird flu at a worksite, and both had mild symptoms and were treated with antiviral medications, according to the two counties' health departments.

Public health officials have been monitoring wastewater across the state, detecting the virus in several Bay Area locations, including San Francisco, Napa, and San José. However, California State Epidemiologist Erica Pan explained to ABC30 that these detections might be primarily due to "residential or other commercial milk dumping down in the sinks."

Although health officials said the risk remains low for the general public, the virus kills 90 percent to 100 percent of infected poultry and about 1 percent to 2 percent of cows. California State Veterinarian Annette M. Jones noted that infected cows may never fully recover.

As the country's largest dairy producing state, California faced a heavy economic toll from the bird flu outbreak. The virus has led to quarantines and increased testing requirements. The authorities said the state is now testing its 1.7 million cows weekly.

California's milk production dropped 9.2 percent in November from the same month last year, the most significant decline recorded, according to the monthly Milk Production Report released by the U.S. Department of Agriculture (USDA) on Dec. 19. Meanwhile, California's reduced output has led to a 1 percent decrease in national milk production, raising concerns over U.S. dairy product availability and costs.

The state's poultry operations have also been hit hard. The California Department of Food and Agriculture reported that 51 commercial poultry operations and nine backyard flocks across the state had been affected.

The virus has also appeared in unexpected places, with Los Angeles County confirming two cases in domestic cats that consumed contaminated raw milk.

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Source: China Daily, https://www.chinadaily.com.cn/a/202412/26/WS676cb951a310f1265a1d503b.html

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Wednesday, December 25, 2024

#USA, #Oregon: Morasch #Meats of #Portland Voluntary #Recall of Northwest Naturals Brand 2lb #Feline #Turkey Recipe Raw & Frozen #Pet #Food Due to #HPAI {#H5N1} Contamination

The Oregon Department of Agriculture (ODA) is alerting pet owners that samples of Northwest Naturals brand 2lb Turkey Recipe raw & frozen pet food tested positive for a H5N1 strain of the Highly Pathogenic Avian Influenza (HPAI) virus

Testing conducted by the U.S. Department of Agriculture’s (USDA) National Veterinary Services Laboratories (NVSL) and the Oregon Veterinary Diagnostic Laboratory (ODVL) at Oregon State University confirmed a house cat in Washington County contracted H5N1 and died after consuming the raw frozen pet food

Tests confirmed a genetic match between the virus in the raw and frozen pet food and the infected cat.

“We are confident that this cat contracted H5N1 by eating the Northwest Naturals raw and frozen pet food,” said ODA State Veterinarian Dr. Ryan Scholz. 

“This cat was strictly an indoor cat; it was not exposed to the virus in its environment, and results from the genome sequencing confirmed that the virus recovered from the raw pet food and infected cat were exact matches to each other.”

Northwest Naturals, a Portland, Oregon-based company, is voluntarily recalling its Northwest Naturals brand 2lb Feline Turkey Recipe raw & frozen pet food. 

The recalled product is packaged in 2-pound plastic bags with “Best if used by” dates of 05/21/26 B10 and 06/23/2026 B1. 

The product was sold nationwide through distributors in AZ, CA, CO, FL, GA, IL, MD, MI, MN, PA, RI and WA in the United States, and British Columbia in Canada

Customers who have purchased the recalled product should immediately discard the product and contract the place of purchase for a full refund. 

For additional information or questions, customers may contact Northwest Naturals of Portland at info@nw-naturals.net or 866-637-1872 from 7:00 AM to 3:30 PM PST, Monday through Friday

The Oregon Health Authority (OHA) and local public health officials are monitoring household members who had contact with the cat for flu symptoms. 

To date, no human cases of HPAI have been linked to this incident, and the risk of HPAI transmission to humans remains low in Oregon. 

Since 2022, OHA has partnered with ODA through a One Health approach to investigate human exposures to animal outbreaks of avian influenza.

To avoid the spread of disease, including HPAI, state, and federal experts strongly encourage people and their pets to:

-- Avoid consuming raw or undercooked meat products

-- Avoid consuming raw dairy

-- Limit contact with sick or dead animals

-- Wash your hands after handling raw animal products or contact with sick/dead animals

-- Report sick or dead birds to ODA at 503-986-4711

-- Keep pets or poultry away from wild waterfowl

This case reminds us that feeding raw meat products to pets or consuming them yourself can lead to severe illness. 

Raw meat may contain harmful pathogens, including Salmonella, Listeria, E. coli, and H5N1. These pathogens are destroyed when meat is thoroughly cooked. 

Raw milk, which has not been pasteurized, can also carry harmful germs. Pasteurization of milk eliminates disease-causing pathogens, including HPAI.

Although Oregon has reported one confirmed human case of HPAI, there are no confirmed cases of the virus in dairy cows or cow milk. 

As a precautionary measure, ODA announced on December 11 that it will test milk from every commercial dairy across the state. Neighboring states such as Idaho, Nevada, and California have reported HPAI cases in dairy cattle herds, contributing to over 700 confirmed cases in 16 states nationwide.

Source: Department of Agriculture, https://apps.oregon.gov/oregon-newsroom/OR/ODA/Posts/Post/morasch-meats-voluntary-recall-feline-raw-pet-food-hpai

#Mpox #mRNA-1769 #vaccine inhibits #orthopoxvirus #replication at intranasal, intrarectal, and cutaneous sites of inoculation

Abstract

We previously reported that mice immunized twice with a lipid nanoparticle vaccine comprising four monkeypox viral mRNAs raised neutralizing antibodies and antigen-specific T cells and were protected against a lethal intranasal challenge with vaccinia virus (VACV). Here we demonstrated that the mRNA vaccine also protects mice against intranasal and intraperitoneal infections with monkeypox virus and bioluminescence imaging showed that vaccination greatly reduces or prevents VACV replication and spread from intranasal, rectal, and dermal inoculation sites. A single vaccination provided considerable protection that was enhanced by boosting for at least 4 months. Protection was related to the amount of mRNA inoculated, which correlated with neutralizing antibody levels. Furthermore, immunocompetent and immunodeficient mice lacking mature B and T cells that received serum from mRNA-immunized macaques before or after VACV challenge were protected. These findings provide insights into the mechanism and extent of mRNA vaccine-induced protection of orthopoxviruses and support clinical testing.

Source: npj Vaccines, https://www.nature.com/articles/s41541-024-01052-2

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#Recommendations for the #surveillance of #influenza A(#H5N1) in #cattle

Summary 

Beyond domestic poultry, influenza A(H5N1) of clade 2.3.4.4b has spread to almost all regions, infecting a wide range of wild birds, marine and terrestrial mammals, and recently, cattle in the United States of America. When an influenza virus is circulating in both avian and mammalian populations, the likelihood of spillover to humans and risk to public health may increase. The reported events of the influenza A(H5N1) virus among terrestrial and marine mammals in several countries, including the recent cases detected in the United States of America, have made it necessary to improve virus detection in cattle and other susceptible mammals and closely monitor virus evolution and adaptation to extraordinary hosts. These recommendations aim to support countries in planning surveillance for influenza A(H5N1) in cattle to enhance early detection, to generate evidence-based information to mitigate the impacts of spillover from birds to cattle, and to prevent transmission between cattle herds. Additionally, these recommendations aim to assist countries, especially low- and middle-income countries, in optimizing the use of limited resources to achieve their surveillance objectives through leveraging existing surveillance programmes. The Food and Agriculture Organization of the United Nations (FAO) recommends that all countries maintain passive surveillance for A(H5N1) to rapidly detect spillover events in non-avian species, using an appropriate case definition alongside education and outreach to relevant stakeholders to improve awareness of this emerging disease. Additionally, countries may choose to use other surveillance approaches to leverage routine and opportunistic sampling to evaluate the health of cattle populations. Event-based surveillance may also be a helpful tool in early detection. For at-risk countries,1 targeted or risk-based surveillance approaches can be used to more closely assess cattle health at the interface with poultry or wild birds, investigate suspected outbreaks in cattle, and demonstrate freedom from infection. These recommendations have a broad application to other susceptible farmed mammals.

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Source: FAO, https://openknowledge.fao.org/items/4c29fcb1-67e2-4a37-a780-cb4fe0c9f253

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#USA, #California: Public #Health Confirms #Human #H5 #Birdflu Case in #LA County

 {Excerpt}

{December 23 '24}

The Los Angeles County Department of Public Health has confirmed a human case of H5 bird flu in an adult who was exposed to livestock infected with H5 Bird flu at a worksite

This is the first human case of H5 bird flu detected in LA County. 

The person had mild symptoms, has been treated with antivirals, and is recovering at home

The overall risk of H5 bird flu to the public remains low.

There is currently no evidence of person to person spread of this virus. 

Close contacts of the infected person and other workers exposed at the worksite are being monitored for symptoms and have been offered personal protective equipment, testing and antiviral prophylaxis

No additional cases have been identified at this time. 

Public Health is working closely with the Centers for Disease Control and Prevention (CDC) and the California Department of Public Health (CDPH) on the ongoing investigation.

“People rarely get bird flu, but those who interact​ with infected livestock or wildlife ​have a greater risk of infection. This case reminds us to take basic precautions to prevent being exposed,” said Muntu Davis, MD, MPH, Los Angeles County Health Officer. 

“People should avoid unprotected contact with sick or dead animals including cows, poultry, and wild birds; avoid consuming raw or undercooked animal products, such as raw milk; and protect pets and backyard poultry from exposure to wild animals. It is also important for everyone to get the seasonal flu vaccine, which can help prevent severe seasonal flu illness and lower the risk of getting both seasonal and bird flu infections at the same time if exposed.”

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Source: Los Angeles County Public Health Department, http://publichealth.lacounty.gov/phcommon/public/media/mediapubHPdetail.cfm?cur=cur&prid=4915&row=25&start=1

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Tuesday, December 24, 2024

Natural #infection of common #cranes (Grus grus) with highly pathogenic avian #influenza #H5N1 in #Serbia

{Abstract}

Introduction

The late autumn epizootic of the highly pathogenic avian influenza virus (HPAIV) subtype H5N1 in Serbia in 2023 caused massive mortality in the migratory population of common cranes (Grus Grus). This is the first time HPAIV has been identified in the common crane in Serbia, leading to mass mortality of this bird species.

Methods

To understand the pathological impact of HPAIV in cranes, we evaluated the pathological changes in the tissues of common cranes. Additionally, we report genomic characterization of HPAI/H5N1. In total, 14 juvenile common crane carcasses were examined.

Results

Infected birds primarily exhibited neurologic signs, including ataxia and incoordination. Grossly, necrotizing pancreatitis was the most common finding, while microscopic lesions included necrosis, inflammation and hemorrhages in the lungs, spleen, brain, liver and kidneys. Based on RT-PCR, all birds were infected with the HPAI H5N1 virus, as viral RNA was detected in all 14 selected tissues. Genetic analysis revealed that our H5N1 isolate could be grouped with highly pathogenic avian influenza clade 2.3.4.4b, subgroup DA, and is very closely related to the H5N1 strains isolated from the common crane and turkey from Croatia, the common crane from Italy and the Ural owl from Slovakia.

Discussion

Our findings showed that common cranes are highly susceptible to natural infection with the HPAI H5N1 virus of clade 2.3.4.4b and may serve as bio-sentinels for the presence of the HPAI virus in wildlife.

Source: Frontiers of Veterinary Science, https://www.frontiersin.org/journals/veterinary-science/articles/10.3389/fvets.2024.1462546/full

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#USA, #California: Current #H5N1 #Birdflu #Situation in #Humans {1 new case, total now = 37}

 {Excerpt, edited}

Updated December 23, 2024​

-- ​​​The current risk to the public remains low.  ​​

-- No person-to-person spread of bird flu has been detected in California. 

-- People rarely get bird flu, but those who interact​ with infected dairy cows, poultry, or wildlife ​have a greater risk of infection.​​

-- Pasteurized milk and dairy products are safe to consume. Pasteurization inactivates the bird flu virus.​​

-- CDPH is working to protect public health related to bird flu. We monitor infection data, evolving science, and the people affected. Our knowledge will change as we learn more. We are committed to reducing the impact to those at highest risk.


Human Cases in Califo​rnia​

​​​​​​​Confirmed Human Cases​: 37 {+1}

​These numbers were last updated on December 23, 2024.

California has 1 additional probable case with dairy cow exposure that meets the  Council of State and Territorial Epidemiologists (CSTE) ​probable case definition (PDF)​. That case tested positive by a local lab and confirmatory testing at CDC was negative.​​


Confirmed human case summary during the 2024 outbreak, by exposure source.

-- ​Cattle: ​36

-- Poultry:​ 0

-- ​Unkn​own: ​1

--- ​Total: ​37

(...)

Source: Department of Health, https://www.cdph.ca.gov/Programs/CID/DCDC/Pages/Bird-Flu.aspx

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Monday, December 23, 2024

Targets of #influenza #human T-cell response are mostly conserved in #H5N1

ABSTRACT

Frequent recent spillovers of subtype H5N1 clade 2.3.4.4b highly pathogenic avian influenza (HPAI) virus into poultry and mammals, especially dairy cattle, including several human cases, increased concerns over a possible future pandemic. Here, we performed an analysis of epitope data curated in the Immune Epitope Database (IEDB). We found that the patterns of immunodominance of seasonal influenza viruses circulating in humans and H5N1 are similar. We further conclude that a significant fraction of the T-cell epitopes is conserved at a level associated with cross-reactivity between avian and seasonal sequences, and we further experimentally demonstrate extensive cross-reactivity in the most dominant T-cell epitopes curated in the IEDB. Based on these observations, and the overall similarity of the neuraminidase (NA) N1 subtype encoded in both HPAI and seasonal H1N1 influenza virus as well as cross-reactive group 1 HA stalk-reactive antibodies, we expect that a degree of pre-existing immunity is present in the general human population that could blunt the severity of human H5N1 infections. 

Source: mBio, https://journals.asm.org/doi/10.1128/mbio.03479-24

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Avian #influenza: past, present and future

Summary 

Avian influenza is not a new disease, but the emergence of high pathogenicity avian influenza (HPAI) viruses of the A/Goose/Guangdong/1/96 lineage (Gs/GD) has necessitated fundamental changes to prevention and control strategies for this disease. No longer just an avian disease, avian influenza is capable of causing severe disease in humans and is considered a potential human pandemic threat requiring One Health approaches. In addition, Gs/GD HPAI viruses have developed the capacity to be carried across and between continents by migratory birds. Given the persistence of the current A(H5N1) clade 2.3.4.4b viruses in wild birds, enhanced measures to prevent and control infection will be needed. In most countries, infection in poultry can be eliminated, although questions will remain about the sustainability of repeated stamping out. Systematic preventive vaccination should be seriously considered as a method for reducing the number of outbreaks. HPAI will not be eliminated from countries where Gs/GD viruses remain enzootic until major changes are made to the way that poultry are reared and sold, vaccination is improved and other factors that inhibit reporting and response are overcome. Currently, focus lies on Gs/GD HPAI, yet control of low pathogenicity avian influenza viruses also requires attention, including the development of vaccines that are appropriately matched to circulating strains of virus.

Source: WOAH, https://doc.woah.org/dyn/portal/index.xhtml?page=alo&aloId=44447

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Strategic #challenges in the global #control of high pathogenicity avian #influenza

Summary 

H5Nx A/Goose/Guangdong/1/96 Eurasian lineage high pathogenicity avian influenza (HPAI) viruses have been the main HPAI strains detected globally since 2005. These have spread around the world, causing a panzootic that has spanned six continents, with continual threat to not only wild and captive birds and poultry, but also wild, captive and domestic mammals and humans. The viruses’ ecology and epidemiology – especially the 2.3.4.4b clade – have changed, with over 489 species of birds infected and spreading the virus over migratory routes. This results in the death of many birds, including endangered species, and serves as a source of transmission to poultry and mammals. Improved surveillance and sharing of HPAI virus sequences, metadata and viruses across the veterinary, public health, wildlife and environment sectors are needed to elucidate the population dynamics of the infections, which is crucial to addressing this complex One Health issue. The development of appropriate mitigation strategies or changes in husbandry, production and selling practices can reduce the risk of viruses being introduced into farms, as well as their amplification and viral evolution, and any spill-back to wild birds. Approaches to prevention and control of HPAI in countries where these 2.3.4.4b viruses remain entrenched in poultry, or places at risk of virus introduction via wild bird populations, involve measures to reduce the effects of the disease in poultry (including enhanced farm bio- security, vaccination, zoning and compartmentalisation). Their uptake reflects the difficulties encountered in relying solely on biosecurity for disease prevention and on stamping out alone for virus control and elimination. The World Organisation for Animal Health’s Terrestrial Animal Health Code allows use of vaccination of poultry under specific conditions and without negatively impacting HPAI-free status if appropriate surveillance is conducted, thus supporting safe trade in poultry and poultry products. Nevertheless, concerns regarding loss of valuable export markets still interfere with greater utilisation of vaccination.

Source: WOAH, https://doc.woah.org/dyn/portal/index.xhtml?page=alo&aloId=44448

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#USA, #California: Confirmed #H5 #Birdflu Detected in #LA County #Cats That Consumed Recalled Raw #Milk - Public Health Investigating Additional Possible Cases in Cats

 {Excerpt}

The Los Angeles County Department of Public Health has confirmed two cases of H5 bird flu in cats that consumed recalled raw milk from Raw Farm, LLC. In addition, Public Health is investigating three other possible cases of H5 bird flu in three cats from a different household.

The confirmed two infected indoor cats from one household consumed raw milk linked to a recall of raw milk and cream products prior to onset of symptoms, which included lack of appetite, fever and neurologic signs. The infected cats died after severe worsening of their illness, and subsequently tested positive for Influenza A, a rare result in cats. Public Health received the results of confirmatory testing, which confirmed the infection of H5 bird flu. Additional pets in the home are under quarantine.

Public Health is now investigating additional possible cases of H5 bird flu in three cats from a different household. One cat has tested positive for Influenza A, a rare result in cats. Two other cats, which have died after worsening respiratory illness, are presumed to have also been positive for Influenza A. Public Health is awaiting confirmatory testing. These cats were not known to be exposed to raw milk, however public health is investigating other possible sources of infection, including raw meat.

The nationwide H5 bird flu outbreak has seen other cats infected with the virus after consuming infected raw milk.

People who had direct contact with the cats are monitoring for symptoms and have been offered antiviral prophylaxis. There have been no human cases of bird flu associated with exposure to these cats yet identified. The investigation is ongoing.

Although human cases of bird flu are rare and the risk to residents remains low, this detection of H5 bird flu in cats who consumed raw milk underscores the importance of being proactive about preventing ongoing transmission of the virus.

“The risk of H5 bird flu remains low in Los Angeles County, but these confirmed cases of the virus in pet cats are a reminder that consuming raw dairy and meat products can lead to severe illness in cats," said Dr. Barbara Ferrer, Ph.D., M.P.H., M.Ed., Director of the Los Angeles County Department of Public Health. “To avoid the spread of disease, including H5 bird flu, we strongly encourage residents and their pets to avoid raw dairy and undercooked meat products, limit contact with sick or dead animals, report sick or dead birds and keep pets or poultry away from wild animals and birds.”

Cats may be exposed to H5 bird flu by consuming infected birds or other animals, being in environments contaminated with the virus, and consuming unpasteurized milk from infected cows. Cats infected with H5 bird flu may develop severe illness that can include fever and neurologic signs, and that can rapidly progress to death. Transmission of the H5 bird flu virus from mammal to mammal can occur. Cats have transmitted another influenza strain to humans, but there have been no known cases to date of H5 bird flu transmitted from cats to humans as part of this nationwide H5 bird flu outbreak.

Raw milk, which is milk that has not been pasteurized, can carry harmful germs including influenza. These germs can present serious health risks to you, your family, and your pets. Anyone can become sick from drinking raw milk or consuming raw milk products. The people at the highest risk for severe illness include people who are pregnant, adults 65 years and older, children younger than 5 years, and people with weakened immune systems.

Public Health continues to strongly encourage residents to avoid consuming raw milk and to not feed it to their pets; this includes frozen raw milk products since freezing does not eliminate harmful germs that can cause illness. Pasteurized milk remains safe to drink.

Symptoms of H5 bird flu infection in humans include eye redness or discharge, cough, sore throat, runny or stuffy nose, diarrhea, vomiting, muscle or body aches, headaches, fatigue, trouble breathing and fever.

Anyone who has consumed these specific recalled raw milk products and is experiencing symptoms should immediately contact their health care provider or local health department.

Samples from birds, cats, and wild mammals in LA County continue to be tested for H5 bird flu at our Public Health Laboratory. In addition, the Public Health Laboratory routinely tests clinical specimens from humans for H5 bird flu as part of ongoing surveillance.

(...)

Source: Los Angeles County Public Health Department, http://publichealth.lacounty.gov/phcommon/public/media/mediapubhpdetail.cfm?prid=4908

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#USA, Confirmed #H5N1 avian #flu virus #human case summary during 2024 #outbreak, by state & exposure source {as of Dec. 23: +1 case, total = 65}

{Excerpt, edited}

Exposure Source

[State - Exposure Associated with Commercial Agriculture and Related Operations: Dairy Herds (Cattle) Poultry Farms and Culling Operations - Other Animal Exposure† - Exposure Source Unknown‡ - State Total]

1) California - 35 - 0 - 0 - 1 - 36

2) Colorado - 1 - 9 - 0 - 0 - 10

3) Iowa - 0 - 1 - 0 - 0 - 1 {+1}

4) Louisiana - 0 - 0 - 1 - 0 - 1

5) Michigan - 2 - 0 - 0 - 0 - 2

6) Missouri - 0 - 0 - 0 - 1 - 1

7) Oregon - 0 - 1 - 0 - 0 - 1

8) Texas - 1 - 0 - 0 - 0 - 1

9) Washington - 0 - 11 - 0 - 0 - 11

10) Wisconsin - 0 - 1 - 0 - 0 - 1

-- Source Total - 39 - 23 - 1 - 2 - 65 {+1}

NOTE: One additional case was previously detected in a poultry worker in Colorado in 2022.

{†} Exposure was related to other animals such as backyard flocks, wild birds, or other mammals

{‡} Exposure source was not able to be identified


Probable human case summary during the 2024 outbreak, by state and exposure source

When a case tests positive for H5 at a public health laboratory but testing at CDC is not able to confirm H5 infection, per Council of State and Territorial Epidemiologists (CSTE) guidance, a case is reported as probable.

[Probable cases with commercial poultry exposure (e.g., poultry farms or culling operations):]

-- Washington (3)

-- Arizona (2)

[Probable cases with commercial dairy (cattle) exposure:]

-- California (1)

[Probable cases with exposure source unknown:]

-- Delaware (1)

Confirmed and probable cases are typically updated by 5 PM EST on Mondays (for cases confirmed by CDC on Friday, Saturday, or Sunday), Wednesdays (for cases confirmed by CDC on Monday or Tuesday), and Fridays (for cases confirmed by CDC on Wednesday and Thursday). Affected states may report cases more frequently.

(...)

Source: US Centers for Disease Control and Prevention, https://www.cdc.gov/bird-flu/situation-summary/?CDC_AAref_Val=https://www.cdc.gov/flu/avianflu/avian-flu-summary.htm

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#WHO #Statement on the #antigen #composition of #COVID19 #vaccines (Dec. 23 '24)

23 December 2024 - Statement 


Key points:

-- Vaccination remains an important public health countermeasure against COVID-19. As per the WHO Director General’s standing recommendations for COVID-19, Member States are recommended to continue to offer COVID-19 vaccination based on the recommendations of the WHO Strategic Advisory Group of Experts on Immunization (SAGE).

-- SARS-CoV-2 continues to circulate and evolve with important genetic and antigenic evolution of the spike protein since the beginning of the COVID-19 pandemic.

-- The objective of an update to COVID-19 vaccine antigen composition is to enhance vaccine-induced immune responses to circulating SARS-CoV-2 variants.

-- The WHO TAG-CO-VAC advises retaining the use of a monovalent JN.1 lineage variant as the antigen in future formulations of COVID-19 vaccines.

-- In accordance with WHO SAGE policy, vaccination should not be delayed in anticipation of access to vaccines with an updated composition; vaccination programmes can continue to use any available WHO emergency-use listed or prequalified COVID-19 vaccines. 

The WHO Technical Advisory Group on COVID-19 Vaccine Composition (TAG-CO-VAC) continues to  closely monitor the genetic and antigenic evolution of SARS-CoV-2 variants, immune responses to SARS-CoV-2 infection and COVID-19 vaccination, and the performance of COVID-19 vaccines against circulating variants. 

Based on these evaluations, WHO advises vaccine manufacturers and regulatory authorities on the implications for future updates to COVID-19 vaccine antigen composition. 

In April 2024, the TAG-CO-VAC recommended the use of a monovalent JN.1 lineage vaccine antigen as one approach to induce enhanced neutralizing antibody responses to JN.1 and its descendent lineages.  Several manufacturers (using mRNA and recombinant protein-based vaccine platforms) have updated COVID-19 vaccine antigen composition to monovalent JN.1 lineage formulations (JN.1 or KP.2) and some of these have been approved for use by regulatory authorities. Previous statements from the TAG-CO-VAC can be found on the  WHO website.

The TAG-CO-VAC reconvened on 10-12 December 2024 to review the genetic and antigenic evolution of SARS-CoV-2; immune responses to SARS-CoV-2 infection and/or COVID-19 vaccination; the performance of currently approved vaccines against circulating SARS-CoV-2 variants; and the implications for COVID-19 vaccine antigen composition.


Evidence reviewed

The published and unpublished evidence reviewed by the TAG-CO-VAC included: 

(1) SARS-CoV-2 genetic evolution with additional support from the WHO  Technical Advisory Group on SARS-CoV-2 Virus Evolution (TAG-VE); 

(2) Antigenic characterization of previous and emerging SARS-CoV-2 variants using virus neutralization tests with animal antisera and further analysis of antigenic relationships using antigenic cartography; 

(3) Immunogenicity data on the breadth of neutralizing antibody responses elicited by currently approved vaccine antigens against circulating SARS-CoV-2 variants using animal and human sera; 

(4) Preliminary immunogenicity data on immune responses following infection with circulating SARS-CoV-2 variants; 

(5) Available vaccine effectiveness (VE) estimates of currently approved vaccines during periods of circulation of XBB.1 and JN.1 lineages; and 

(6) Preliminary preclinical and clinical immunogenicity data on the performance of candidate vaccines with updated antigens shared confidentially by vaccine manufacturers with TAG-CO-VAC. 

Further details on the publicly available data reviewed by the TAG-CO-VAC can be found in the accompanying data annex. Unpublished and/or confidential data reviewed by the TAG-CO-VAC are not shown.


Summary of available evidence

In 2024, SARS-CoV-2 continues to circulate globally and cause severe disease, post COVID-19 condition and death. The majority of COVID-19 deaths continue to occur in individuals aged 65 years and older and those with coexisting conditions. There are persistent and increasing gaps in the reporting of cases, hospitalizations and deaths, from WHO Member States, making epidemiological trends difficult to infer.

Currently circulating SARS-CoV-2 variants are all derived from JN.1. The weekly proportion of XEC sequences among all SARS-CoV-2 sequences submitted to GISAID continues to increase, while the weekly proportions of all other Variants of Interest (JN.1) or Variants Under Monitoring (KP.2, KP.3, KP.3.1.1, JN.1.18 and LB.1) are now declining. There are other JN.1-derived variants that are currently in low proportions, but which have mutations that may give them an advantage over XEC: currently LP.8.1, NP.1, LF.7.2 are variants being monitored and/or characterized.

In published and unpublished data using antisera from naïve animal models, circulating JN.1-derived variants (JN.1, JN.1.16.1, KP.2, KP.2.3, KP.3, KP.3.1.1, LB.1 and XEC) are antigenically closely related.

Analysis of naïve mice immunized with mRNA vaccine antigens (KP.3, KP.3.1.1, XEC) showed that JN.1, KP.3.1.1, XEC are antigenically closely related to each other (approximately 1 antigenic unit in cartographic analysis, which corresponds to a two-fold-reduction in neutralization). Antisera to KP.3.1.1 and XEC generate cross-reactive neutralizing antibody titers to each other and to other emerging variants.

Antisera from naïve hamsters infected with JN.1 descendent lineages showed that circulating JN.1-derived variants such as KP.3.1.1 are antigenically closely related to JN.1 and to each other (approximately 1 antigenic unit in cartographic analysis). JN.1 antisera showed greater cross-reactivity to KP.2 and KP.3.1.1, as compared to KP.2 antisera.

In published and unpublished data from humans, vaccination with monovalent JN.1 or KP.2 antigens significantly increased neutralizing antibody titers that cross-reacted with all JN.1 descendent lineages tested.

Analysis of pre- and post-vaccination sera from JN.1 or KP.2 immunized individuals demonstrated that vaccination results in strong rises in neutralizing antibody titers against JN.1 and descendent variants, including KP.2, KP.2.3, KP.3, KP.3.1.1 and XEC.

Post-monovalent JN.1 or KP.2 vaccination neutralizing antibody titers against KP.3.1.1 and XEC were modestly lower (consistent 2-fold reductions in titers) than those against the homologous JN.1 or KP.2 antigens.

There were greater reductions in cross-neutralization of emerging JN.1 lineage variants using post-monovalent XBB.1.5 vaccination sera, as compared to post-monovalent JN.1 or post-monovalent KP.2 vaccination sera.

In a context of infection- and vaccine-derived immunity in the majority of the population, contemporary vaccine effectiveness (VE) estimates are relative (rVE) rather than absolute (comparing vaccinated to unvaccinated individuals). rVE, sometimes referred to as “up-to-date VE”, demonstrates the added protection of most recent vaccination over and above pre-existing immunity derived from previous infections and/or vaccinations. There are currently studies reporting VE or rVE estimates using monovalent JN.1 lineage (JN.1 or KP.2) vaccines.  

Approved monovalent XBB.1.5 mRNA COVID-19 vaccines continued to provide additional protection against severe disease and death during periods of XBB descendent lineage circulation in the first three months after vaccination; rVE point estimates against symptomatic disease were typically lower. During periods of JN.1 descendent lineage circulation, monovalent XBB.1.5 mRNA vaccines continued to show additional protection in the first three months after vaccination, however, available evidence points towards a reduction in rVE estimates against JN.1-derived variants, as compared to XBB.1 lineage variants, for protection against death, severe disease, symptomatic disease and infection.

The VE estimates for monovalent XBB.1.5 vaccines against JN.1-derived variants are consistent with reductions in neutralizing antibody titers observed in preclinical and clinical immunogenicity studies of post-monovalent XBB.1.5 vaccination sera against JN.1 descendent variants, as compared to XBB.1 lineage variants.

Preclinical data shared confidentially with the TAG-CO-VAC by vaccine manufacturers show that immunization of naïve mice, as well as of mice previously immunized with SARS-CoV-2 variants with monovalent JN.1-containing or monovalent KP.2-containing vaccine candidates resulted in good neutralization of JN.1 and descendent variants, including KP.3.1.1, XEC and MC.1. However, neutralizing antibody titers against KP.3.1.1, XEC and MC.1 were approximately 2-fold lower than those against the homologous immunizing antigen. A single preclinical immunogenicity study in mice using an XEC vaccine candidate showed comparable neutralizing antibody titers against JN.1, KP.3.1.1 and XEC as compared to a JN.1 vaccine candidate.

Clinical data shared confidentially with the TAG-CO-VAC by vaccine manufacturers show that post-monovalent JN.1 sera neutralized JN.1 and its derivatives including KP.3.1.1 and XEC well.

The TAG-CO-VAC acknowledges several limitations of the available data: 

-- There are persistent and increasing gaps in the reporting of cases, hospitalizations and deaths, from WHO Member States, as well as in genetic/genomic surveillance of SARS-CoV-2 globally, including low numbers of samples sequenced and limited geographic diversity. The TAG-CO-VAC strongly supports the ongoing work of the WHO  Coronavirus Network (CoViNet) to address this information gap.

-- The timing, specific mutations and antigenic characteristics of emerging and future variants are difficult to predict, and the potential public health impact of these variants remain unknown. There are JN.1-derived variants such as LP.8.1, NP.1 and LF.7.2 that are currently in low proportions, but which have mutations that may give them more immune escape than XEC. These will continue to be monitored and/or characterized. The TAG-CO-VAC strongly supports the ongoing work of the TAG-VE. 

-- Although neutralizing antibody titers have been shown to be important correlates of protection from SARS-CoV-2 infection and of estimates of vaccine effectiveness, there are multiple components of immune protection elicited by infection and/or vaccination. Data on the immune responses following JN.1 descendent lineage infection or monovalent JN.1, KP.2 or XBB.1.5 vaccination are largely restricted to neutralizing antibodies. Data and interpretation of other aspects of the immune response, including cellular immunity, are limited. 

-- Immunogenicity data against currently circulating SARS-CoV-2 variants are not available for all COVID-19 vaccines. Further, there are very limited data on immune responses following infection in humans with recent SARS-CoV-2 variants (e.g., KP.3.1.1, XEC).

-- Estimates of VE against recently circulating SARS-CoV-2 variants, including XBB or JN.1 descendent lineages, are limited in terms of the number and geographic diversity of studies, vaccine platforms evaluated, populations assessed, and duration of follow-up. Furthermore, the referent population for VE estimates varies substantially with respect to prior history of vaccination. There are currently no direct comparative estimates for monovalent JN.1, KP.2 or XBB.1.5 vaccines versus other antigen composition(s) delivered during the same time period. Finally, VE estimates may be confounded by differences in undocumented infection-derived immunity between groups, leading to potential underestimation of VE.


Recommendations for COVID-19 vaccine antigen composition

Given the breadth in immune responses demonstrated by monovalent JN.1 lineage vaccines against circulating variants, the TAG-CO-VAC advises retaining the current COVID-19 vaccine antigen composition, i.e. a monovalent JN.1 lineage variant (NextStrain: 24A, GenBank: PP298019, GISAID: EPI_ISL_18872762) as one approach to induce enhanced neutralizing antibody responses to JN.1 and its descendent variants (e.g., KP.3.1.1 and XEC).

Other approaches that demonstrate broad and robust neutralizing antibody responses against currently circulating JN.1 descendent lineage variants, such as vaccine antigens derived from more recent variants or alternative formulations, could also be considered.

As per the WHO Director General’s  standing recommendations for COVID-19, Member States are recommended to continue to offer COVID-19 vaccination based on the recommendations of the WHO SAGE. Vaccination should not be delayed in anticipation of access to vaccines with an updated composition; vaccination programmes can continue to use any available WHO emergency-use listed or prequalified COVID-19 vaccines.


Further data requested

Given the limitations of the evidence upon which the recommendations above are derived and the anticipated continued evolution of the virus, the TAG-CO-VAC strongly encourages generation of the following data (in addition to the types of data outlined in October 2024): 

-- Immune responses and clinical endpoints (i.e. VE and/or comparator rates of infection and severe disease) in varied human populations who receive COVID-19 vaccines with a monovalent JN.1 or KP.2 vaccine antigen composition, across different vaccine platforms, as well as further clinical and laboratory data on the performance of all currently approved COVID-19 vaccines against emerging SARS-CoV-2 variants.

-- Strengthened epidemiological and virological surveillance, as per the Standing Recommendations for COVID-19 in accordance with the International Health Regulations (2005), to determine if emerging variants are antigenically distinct and able to displace circulating variants.

-- Clinical evaluation of relevant new vaccine antigens derived from more recent variants.

-- As previously stated, the TAG-CO-VAC continues to encourage the further development of vaccines that may improve protection against infection and reduce transmission of SARS-CoV-2.

The TAG-CO-VAC will continue to closely monitor the genetic and antigenic evolution of SARS-CoV-2 variants, immune responses to SARS-CoV-2 infection and COVID-19 vaccination, and the performance of COVID-19 vaccines against circulating variants. The TAG-CO-VAC will also continue to reconvene every six months to evaluate the implications for COVID-19 vaccine antigen composition. At each meeting, recommendations to either maintain current vaccine composition or to consider updates will be issued.

Source: World Health Organization, https://www.who.int/news/item/23-12-2024-statement-on-the-antigen-composition-of-covid-19-vaccines

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Sunday, December 22, 2024

#Coronavirus Disease Research #References (by AMEDEO, December 22 '24)

 


    Antiviral Res

  1. WELCH SR, Bilello JP, Carter K, Delang L, et al
    Meeting report of the 37th International Conference on Antiviral Research in Gold Coast, Australia, May 20-24, 2024, organized by the International Society for Antiviral Research.
    Antiviral Res. 2024;232:106037.
    PubMed         Abstract available

  2. WANG B, Xia H, Peng BH, Choi EJ, et al
    Pellino-1, a therapeutic target for control of SARS-CoV-2 infection and disease severity.
    Antiviral Res. 2024;233:106059.
    PubMed         Abstract available

  3. SHANNON A, Canard B
    Nucleotide analogues and mpox: Repurposing the repurposable.
    Antiviral Res. 2024;234:106057.
    PubMed         Abstract available


    BMJ

  4. FLYNN SG, Park RS, Jena AB, Staffa SJ, et al
    Coaching inexperienced clinicians before a high stakes medical procedure: randomized clinical trial.
    BMJ. 2024;387:e080924.
    PubMed         Abstract available

  5. PATERLINI M
    Italy abolishes fines for refusing covid-19 vaccination.
    BMJ. 2024;387:q2833.
    PubMed        

  6. BONCYK C, Rolfsen ML, Richards D, Stollings JL, et al
    Management of pain and sedation in the intensive care unit.
    BMJ. 2024;387:e079789.
    PubMed         Abstract available

  7. DYER O
    Covid-19 originated in Wuhan lab, alleges Republican congressional report.
    BMJ. 2024;387:q2765.
    PubMed        


    Br J Anaesth

  8. GLASBEY J, Webb SA, Peel T, Pinkney TD, et al
    Global collaboration between platform trials in surgery and anaesthesia.
    Br J Anaesth. 2024 Dec 18:S0007-0912(24)00576-2. doi: 10.1016/j.bja.2024.
    PubMed         Abstract available

  9. YAN F, Yang M
    Tracheostomy outcomes in critically ill patients with COVID-19: a systematic review, meta-analysis, and meta-regression. Comment on Br J Anaesth 2022; 129: 679-92.
    Br J Anaesth. 2024 Dec 12:S0007-0912(24)00680-9. doi: 10.1016/j.bja.2024.
    PubMed        


    Clin Infect Dis

  10. KONKLE SL, Magleby R, Bonacci RA, Segaloff HE, et al
    Post-COVID Condition Risk Factors and Symptom Clusters and Associations with Return to Pre-COVID Health-Results from a 2021 Multi-State Survey.
    Clin Infect Dis. 2024 Dec 20:ciae632. doi: 10.1093.
    PubMed         Abstract available

  11. HERBERT C, Antar AAR, Broach J, Wright C, et al
    Relationship Between Acute Severe Acute Respiratory Syndrome Coronavirus 2 Viral Clearance and Long Coronavirus 2019 (Long COVID) Symptoms: A Cohort Study.
    Clin Infect Dis. 2024 Dec 18:ciae539. doi: 10.1093.
    PubMed         Abstract available

  12. ANTOON JW, Amarin JZ, Hamdan O, Stopczynski T, et al
    Antiviral Use Among Children Hospitalized With Laboratory-Confirmed Influenza Illness: A Prospective, Multicenter Surveillance Study.
    Clin Infect Dis. 2024 Dec 17:ciae573. doi: 10.1093.
    PubMed         Abstract available

  13. RAWSON JMO, Donaldson EF, O'Rear JJ, Harrington PR, et al
    Independent FDA Analyses of Nirmatrelvir/Ritonavir Resistance in the Phase 2/3 Trials EPIC-HR and EPIC-SR.
    Clin Infect Dis. 2024 Dec 17:ciae615. doi: 10.1093.
    PubMed         Abstract available

  14. WEE LE, Lim JT, Goel M, Malek MIA, et al
    Bivalent boosters and risk of post-acute sequelae following vaccine-breakthrough SARS-CoV-2 Omicron infection: a cohort study.
    Clin Infect Dis. 2024 Dec 5:ciae598. doi: 10.1093.
    PubMed         Abstract available

  15. PINANA JL, Carbonell-Asins JA, Gomez D, Montoro J, et al
    Community-Acquired Respiratory Virus Infections: A Threat to Long-Term survivors after Allogeneic Stem Cell Transplant?
    Clin Infect Dis. 2024 Dec 5:ciae602. doi: 10.1093.
    PubMed         Abstract available

  16. SHITTU I, Silva D, Oguzie JU, Marushchak LV, et al
    A One Health Investigation into H5N1 Avian Influenza Virus Epizootics on Two Dairy Farms.
    Clin Infect Dis. 2024 Dec 10:ciae576. doi: 10.1093.
    PubMed         Abstract available


    Infect Control Hosp Epidemiol

  17. LINKENHELD A, Williams VR, Chan K, Carating H, et al
    Impact of daily prompt to vaccinate inpatients awaiting rehabilitation against SARS-CoV-2 and influenza.
    Infect Control Hosp Epidemiol. 2024 Dec 19:1-3. doi: 10.1017/ice.2024.
    PubMed         Abstract available


    Int J Infect Dis

  18. SIBOMANA O, Hakayuwa CM, Munyantore J
    Marburg Virus Reaches Rwanda: How Close Are We to a Vaccine Solution?
    Int J Infect Dis. 2024 Dec 19:107371. doi: 10.1016/j.ijid.2024.107371.
    PubMed         Abstract available

  19. ANDEWEG SP, de Kassteele JV, Wang X, van Maarseveen N, et al
    Estimating the effect of COVID-19 vaccination and prior infection on Ct values as a proxy of SARS-CoV-2 viral load.
    Int J Infect Dis. 2024 Dec 9:107362. doi: 10.1016/j.ijid.2024.107362.
    PubMed         Abstract available

  20. WATASE M, Masaki K, Chubachi S, Namkoong H, et al
    Corrigendum to 'Impact of accumulative smoking exposure and chronic obstructive pulmonary disease on COVID-19 outcomes: report based on findings from the Japan COVID-19 task force' [IJID 128 (2023) 121-127].
    Int J Infect Dis. 2024;151:107322.
    PubMed        

  21. DEQUIDT T, Richier Q, Louapre C, Ader F, et al
    Convalescent plasma in patients receiving Rituximab or Ocrelizumab for Multiple Sclerosis or Neuromyelitis Optica Spectrum Disorder with COVID-19: A Multicenter Retrospective Study.
    Int J Infect Dis. 2024 Dec 4:107323. doi: 10.1016/j.ijid.2024.107323.
    PubMed         Abstract available


    J Infect

  22. CHOW KN, Tsang YW, Chan YH, Telaga SA, et al
    The effect of pre-COVID and post-COVID vaccination on long COVID: a systematic review and meta-analysis.
    J Infect. 2024 Nov 21:106358. doi: 10.1016/j.jinf.2024.106358.
    PubMed         Abstract available

  23. MOK CKP, Tang YS, Tan CW, Chong KC, et al
    Comparison of safety and immunogenicity in the elderly after receiving either Comirnaty or Spikevax monovalent XBB1.5 COVID-19 vaccine.
    J Infect. 2024;90:106374.
    PubMed         Abstract available


    J Med Virol

  24. HUANG J, Li Y, Chen H, Liu H, et al
    Epidemiological, Clinical, and Genomic Traits of PIV in Hospitalized Children After the COVID-19 Pandemic in Wuhan, China.
    J Med Virol. 2024;96:e70117.
    PubMed         Abstract available

  25. CHAN YJ, Chen CC, Tu YK, Hsu WH, et al
    The Effectiveness of COVID-19 Vaccination on Post-Acute Sequelae of SARS-CoV-2 Infection Among Geriatric Patients.
    J Med Virol. 2024;96:e70119.
    PubMed         Abstract available

  26. VLAMING-VAN EIJK LE, Ertugrul IA, Upasani V, Wold KI, et al
    Temporal Dynamics and (Para)Clinical Factors Associated With (Long) Viral RNA Shedding in COVID-19 Nonhospitalized Individuals - The COVID-HOME Study.
    J Med Virol. 2024;96:e70125.
    PubMed         Abstract available

  27. DALEXIS RD, Moshirian Farahi SMM, Dort J, Beogo I, et al
    Rates and Factors Related to COVID-19 Vaccine Uptake in Racialized and Indigenous Individuals in Canada: The Deleterious Effect of Experience of Racial Discrimination.
    J Med Virol. 2024;96:e70127.
    PubMed         Abstract available

  28. LAURE C, Hanae PR, Helene C, Melanie F, et al
    COVID-19 and Oncofertility: No SARS-CoV-2 in Semen but Inflammation Seems to Affect Sperm Parameters.
    J Med Virol. 2024;96:e70070.
    PubMed         Abstract available

  29. MANRIQUE JM, Maffia-Bizzozero S, Delpino MV, Quarleri J, et al
    Multi-Organ Spread and Intra-Host Diversity of SARS-CoV-2 Support Viral Persistence, Adaptation, and a Mechanism That Increases Evolvability.
    J Med Virol. 2024;96:e70107.
    PubMed         Abstract available


    J Virol

  30. BARBOSA BOMFIM CC, Genin H, Cottoignies-Callamarte A, Gallois-Montbrun S, et al
    Erratum for Barbosa Bomfim et al., "CGRP inhibits SARS-CoV-2 infection of bronchial epithelial cells, and its pulmonary levels correlate with viral clearance in critical COVID-19 patients".
    J Virol. 2024 Dec 10:e0200624. doi: 10.1128/jvi.02006.
    PubMed        

  31. CARDANI-BOULTON A, Lin F, Bergmann CC
    CD6 regulates CD4 T follicular helper cell differentiation and humoral immunity during murine coronavirus infection.
    J Virol. 2024 Dec 16:e0186424. doi: 10.1128/jvi.01864.
    PubMed         Abstract available

  32. CAI Z, Ni W, Li W, Wu Z, et al
    SARS-CoV-2 S protein disrupts the formation of ISGF3 complex through conserved S2 subunit to antagonize type I interferon response.
    J Virol. 2024 Dec 19:e0151624. doi: 10.1128/jvi.01516.
    PubMed         Abstract available


    JAMA

  33. MAIA IS, Kawano-Dourado L, Tramujas L, de Oliveira NE, et al
    High-Flow Nasal Oxygen vs Noninvasive Ventilation in Patients With Acute Respiratory Failure: The RENOVATE Randomized Clinical Trial.
    JAMA. 2024 Dec 10. doi: 10.1001/jama.2024.26244.
    PubMed         Abstract available

  34. ANDERER S
    Trial Shows It's Safe to Get COVID-19, Flu Vaccines at the Same Time.
    JAMA. 2024 Dec 13. doi: 10.1001/jama.2024.24891.
    PubMed        

  35. ANDERER S
    New Research Suggests Increased Risk of Some Autoimmune Disorders After COVID-19.
    JAMA. 2024 Dec 13. doi: 10.1001/jama.2024.24894.
    PubMed        

  36. GENG LN, Erlandson KM, Hornig M, Letts R, et al
    2024 Update of the RECOVER-Adult Long COVID Research Index.
    JAMA. 2024 Dec 18. doi: 10.1001/jama.2024.24184.
    PubMed         Abstract available

  37. RUBIN R
    In Search of COVID-19 Vaccines That Elicit Mucosal Immunity and Stop Transmission.
    JAMA. 2024 Dec 20. doi: 10.1001/jama.2024.23627.
    PubMed        


    Lancet


  38. The burden of diseases, injuries, and risk factors by state in the USA, 1990-2021: a systematic analysis for the Global Burden of Disease Study 2021.
    Lancet. 2024;404:2314-2340.
    PubMed         Abstract available

  39. DZAU VJ, Laitner MH, Shambaugh EL
    Strategic imperatives for health in the USA: a roadmap for the incoming presidential administration.
    Lancet. 2024;404:2371-2379.
    PubMed         Abstract available


  40. Global, regional, and national progress towards the 2030 global nutrition targets and forecasts to 2050: a systematic analysis for the Global Burden of Disease Study 2021.
    Lancet. 2025;404:2543-2583.
    PubMed         Abstract available

  41. RUBIN DT, Allegretti JR, Panes J, Shipitofsky N, et al
    Guselkumab in patients with moderately to severely active ulcerative colitis (QUASAR): phase 3 double-blind, randomised, placebo-controlled induction and maintenance studies.
    Lancet. 2024 Dec 17:S0140-6736(24)01927-5. doi: 10.1016/S0140-6736(24)01927.
    PubMed         Abstract available


    Lancet Infect Dis

  42. ROJEK A, Fieggen J, Apiyo P, Caluwaerts S, et al
    Ebola disease: bridging scientific discoveries and clinical application.
    Lancet Infect Dis. 2024 Dec 12:S1473-3099(24)00673.
    PubMed         Abstract available

  43. URIU K, Kaku Y, Uwamino Y, Fujiwara H, et al
    Antiviral humoral immunity induced by JN.1 monovalent mRNA vaccines against SARS-CoV-2 omicron subvariants including JN.1, KP.3.1.1, and XEC.
    Lancet Infect Dis. 2024 Dec 10:S1473-3099(24)00810.
    PubMed        


    Life Sci

  44. OATIS D, Balta C, Herman H, Ciceu A, et al
    The interplay between lung galectins and pro-fibrotic markers in post-COVID-19 fibrogenesis: A pilot study.
    Life Sci. 2024 Dec 19:123326. doi: 10.1016/j.lfs.2024.123326.
    PubMed         Abstract available


    MMWR Morb Mortal Wkly Rep

  45. ABDIRIZAK F, Winn AK, Parikh R, Scobie HM, et al
    Surveillance of Human Adenovirus Types and the Impact of the COVID-19 Pandemic on Reporting - United States, 2017-2023.
    MMWR Morb Mortal Wkly Rep. 2024;73:1136-1141.
    PubMed         Abstract available


    Nature

  46. MEYER C, Garzia A, Miller MW, Huggins DJ, et al
    Small-molecule inhibition of SARS-CoV-2 NSP14 RNA cap methyltransferase.
    Nature. 2024 Dec 11. doi: 10.1038/s41586-024-08320.
    PubMed         Abstract available

  47. VAN NOORDEN R
    Controversial COVID study that promoted unproven treatment retracted after four-year saga.
    Nature. 2024 Dec 18. doi: 10.1038/d41586-024-04014.
    PubMed        

  48. GRAHAM F
    Daily briefing: Infamous 'hydroxychloroquine for COVID-19' paper has been retracted.
    Nature. 2024 Dec 18. doi: 10.1038/d41586-024-04236.
    PubMed        


    Radiology

  49. HENDRICK RE, Monticciolo DL
    Surveillance, Epidemiology, and End Results Data Show Increasing Rates of Distant-Stage Breast Cancer at Presentation in U.S. Women.
    Radiology. 2024;313:e241397.
    PubMed         Abstract available

#Influenza and Other Respiratory Viruses Research #References (by AMEDEO, December 22 '24)

 


    Am J Med

  1. HAWLEY HB
    Long COVID: Clinical Findings, Pathology, and Endothelial Molecular Mechanisms.
    Am J Med. 2025;138:91-97.
    PubMed         Abstract available

  2. HAYES LD, Sanal-Hayes NEM, Mclaughlin M, Berry ECJ, et al
    People with Long Covid and ME/CFS Exhibit Similarly Impaired Balance and Physical Capacity: A Case-Case-Control Study.
    Am J Med. 2025;138:140-147.
    PubMed         Abstract available

  3. MCLAUGHLIN M, Cerexhe L, Macdonald E, Ingram J, et al
    A Cross-Sectional Study of Symptom Prevalence, Frequency, Severity, and Impact of Long COVID in Scotland: Part I.
    Am J Med. 2025;138:121-130.
    PubMed         Abstract available

  4. HONDA H, Takamatsu A, Miwa T, Tabuchi T, et al
    Prolonged Symptoms after COVID-19 in Japan: A Nationwide Survey of the Symptoms and Their Impact on Patients' Quality of Life.
    Am J Med. 2025;138:98-107.
    PubMed         Abstract available

  5. BAILEY J, Lavelle B, Miller J, Jimenez M, et al
    Multidisciplinary Center Care for Long COVID Syndrome-A Retrospective Cohort Study.
    Am J Med. 2025;138:108-120.
    PubMed         Abstract available

  6. XUEREB RA, Borg M, Vella K, Gatt A, et al
    Long COVID Syndrome: A Case-Control Study.
    Am J Med. 2025;138:131-139.
    PubMed         Abstract available

  7. HASLAM A, Prasad V
    Comparability of Control and Comparison Groups in Studies Assessing Long COVID.
    Am J Med. 2025;138:148-152.
    PubMed         Abstract available


    Ann Intern Med

  8. VASSILOPOULOS S, Mylonakis E
    After COVID-19 diagnosis, risk for incident type 2 diabetes was elevated for up to 2 y.
    Ann Intern Med. 2024 Dec 3. doi: 10.7326/ANNALS-24-02887.
    PubMed         Abstract available


    Antiviral Res

  9. MCGOVERN-GOOCH KR, Mani N, Gotchev D, Ardzinski A, et al
    Biological characterization of AB-343, a novel and potent SARS-CoV-2 M(pro) inhibitor with pan-coronavirus activity.
    Antiviral Res. 2024;232:106038.
    PubMed         Abstract available

  10. SASAKI J, Sato A, Sasaki M, Okabe I, et al
    X-206 exhibits broad-spectrum anti-beta-coronavirus activity, covering SARS-CoV-2 variants and drug-resistant isolates.
    Antiviral Res. 2024 Nov 19:106039. doi: 10.1016/j.antiviral.2024.106039.
    PubMed         Abstract available

  11. WELCH SR, Bilello JP, Carter K, Delang L, et al
    Meeting report of the 37th International Conference on Antiviral Research in Gold Coast, Australia, May 20-24, 2024, organized by the International Society for Antiviral Research.
    Antiviral Res. 2024;232:106037.
    PubMed         Abstract available

  12. NAKASHIMA M, Nobori H, Kuroda T, Shimba A, et al
    Oral 3CL protease inhibitor ensitrelvir suppressed SARS-CoV-2 shedding and infection in a hamster aerosol transmission model.
    Antiviral Res. 2024 Oct 28:106026. doi: 10.1016/j.antiviral.2024.106026.
    PubMed         Abstract available


    Arch Virol

  13. ZALI M, Sadat Larijani M, Bavand A, Moradi L, et al
    Circulatory microRNAs as potential biomarkers for different aspects of COVID-19.
    Arch Virol. 2024;170:8.
    PubMed         Abstract available

  14. NAVARRO-LOPEZ R, Valdez-Gomez HE, Zalapa-Hernandez M, Solis-Hernandez M, et al
    An epizootic of highly pathogenic avian influenza virus H7N3 in a Mexican ecological reserve.
    Arch Virol. 2024;170:6.
    PubMed         Abstract available

  15. GUNASEKARA E, Hair-Bejo M, Aini I, Omar AR, et al
    Molecular characterisation of novel reassortants of the G57 genotype of low-pathogenic avian influenza H9N2 virus isolated from poultry farms in Malaysia.
    Arch Virol. 2024;170:3.
    PubMed         Abstract available


    Biochem Biophys Res Commun

  16. HOSOKAWA K, Ohmori H
    Digital reverse transcription PCR using a simple poly(dimethylsiloxane) microwell array chip for detection of SARS-CoV-2.
    Biochem Biophys Res Commun. 2024;741:151070.
    PubMed         Abstract available


    BMC Pediatr

  17. LIN F, Liang JL, Guan ZX, Wu M, et al
    Hospitalized children with influenza A before, during and after COVID-19 pandemic: a retrospective cohort study.
    BMC Pediatr. 2024;24:828.
    PubMed         Abstract available


    BMJ

  18. FLYNN SG, Park RS, Jena AB, Staffa SJ, et al
    Coaching inexperienced clinicians before a high stakes medical procedure: randomized clinical trial.
    BMJ. 2024;387:e080924.
    PubMed         Abstract available

  19. BONCYK C, Rolfsen ML, Richards D, Stollings JL, et al
    Management of pain and sedation in the intensive care unit.
    BMJ. 2024;387:e079789.
    PubMed         Abstract available


    Cell

  20. ROSEN LE, Tortorici MA, De Marco A, Pinto D, et al
    A potent pan-sarbecovirus neutralizing antibody resilient to epitope diversification.
    Cell. 2024;187:7196-7213.
    PubMed         Abstract available


    Epidemiol Infect

  21. ZHENG C, Yu FY, Chan PS, Sun F, et al
    Receiving three doses of inactivated or mRNA COVID-19 vaccines was associated with lower odds of long COVID symptoms among people with a history of SARS-CoV-2 infection in Hong Kong, China: a cross-sectional survey study.
    Epidemiol Infect. 2024;152:e166.
    PubMed         Abstract available

  22. WANG S, Yan J, Song M, Xue Z, et al
    Development of a nomogram for high antibody titre of COVID-19 convalescent plasma.
    Epidemiol Infect. 2024;152:e167.
    PubMed         Abstract available


    Eur J Epidemiol

  23. IOANNIDIS JPA
    Differential risk of healthcare workers versus the general population during outbreak, war and pandemic crises.
    Eur J Epidemiol. 2024;39:1211-1219.
    PubMed         Abstract available

  24. NARAYANAN MK, Dodgeon B, Katsoulis M, Ploubidis GB, et al
    How to mitigate selection bias in COVID-19 surveys: evidence from five national cohorts.
    Eur J Epidemiol. 2024;39:1221-1227.
    PubMed         Abstract available


    J Clin Microbiol

  25. GRENINGER AL, Larcena A, Patel A, Webster B, et al
    Prospective, multi-site evaluation of the Cepheid Xpert Xpress CoV-2 plus test on nasal and nasopharyngeal swabs.
    J Clin Microbiol. 2024;62:e0121924.
    PubMed         Abstract available


    J Gen Virol

  26. KRISHNA B, Metaxaki M, Perera M, Wills M, et al
    Comparison of different T cell assays for the retrospective determination of SARS-CoV-2 infection.
    J Gen Virol. 2024;105.
    PubMed         Abstract available

  27. ALNAJJAR S, Larios-Mora A, Van-Geelen A, Gallup J, et al
    Therapeutic efficacy of JNJ-49214698, an RSV fusion inhibitor, in RSV-infected neonatal lambs.
    J Gen Virol. 2024;105:002056.
    PubMed         Abstract available


    J Infect

  28. JIA T, Wang F, Chen Y, Liao G, et al
    Expanded immune imprinting and neutralization spectrum by hybrid immunization following breakthrough infections with SARS-CoV-2 variants after three-dose vaccination.
    J Infect. 2024 Nov 26:106362. doi: 10.1016/j.jinf.2024.106362.
    PubMed         Abstract available

  29. CHOW KN, Tsang YW, Chan YH, Telaga SA, et al
    The effect of pre-COVID and post-COVID vaccination on long COVID: a systematic review and meta-analysis.
    J Infect. 2024 Nov 21:106358. doi: 10.1016/j.jinf.2024.106358.
    PubMed         Abstract available

  30. REN Z, Yang M, Su G, Qian G, et al
    Real-world effectiveness and safety of Azvudine in hospitalized patients with SARS-CoV-2 infection: a multicenter, retrospective cohort study.
    J Infect. 2024 Nov 17:106355. doi: 10.1016/j.jinf.2024.106355.
    PubMed         Abstract available

  31. MCLEOD C, Dymock M, Flanagan KL, Plebanski M, et al
    The Platform Trial In COVID-19 priming and BOOsting (PICOBOO): the immunogenicity, reactogenicity, and safety of licensed COVID-19 vaccinations administered as a second booster in BNT162b2 primed individuals aged 18-<50 and 50-<70 years old.
    J Infect. 2024 Nov 14:106346. doi: 10.1016/j.jinf.2024.106346.
    PubMed         Abstract available

  32. HAN B, Du C, Deng M, Tang R, et al
    Real-world effectiveness and safety of simnotrelvir/ritonavir for COVID-19: A nationwide, multicenter, prospective, observational cohort study in China.
    J Infect. 2024 Nov 7:106339. doi: 10.1016/j.jinf.2024.106339.
    PubMed         Abstract available

  33. DULFER EA, Fohse K, Taks EJM, Moorlag SJCFM, et al
    The effect of BCG vaccination in the elderly on infectious and non-infectious immune-mediated diseases.
    J Infect. 2024;89:106344.
    PubMed         Abstract available

  34. CITRON MP, Zang X, Leithead A, Meng S, et al
    Evaluation of a non-nucleoside inhibitor of the RSV RNA-dependent RNA polymerase in translatable animals models.
    J Infect. 2024;89:106325.
    PubMed         Abstract available

  35. KUMAR NP, Balaji S, Devi PG, Ramraj B, et al
    Inflammatory Cytokine Responses in Pediatric tuberculosis with or without SARS-CoV-2 seropositivity.
    J Infect. 2024 Oct 17:106314. doi: 10.1016/j.jinf.2024.106314.
    PubMed         Abstract available

  36. WEI X, Wang L, Li M, Qi J, et al
    Novel imported clades accelerated the RSV surge in Beijing, China, 2023-2024.
    J Infect. 2024 Oct 17:106321. doi: 10.1016/j.jinf.2024.106321.
    PubMed         Abstract available

  37. MEIRMAN TD, Shapira B, Balicer RD, Rokach L, et al
    Trends of Common Laboratory Biomarkers after SARS-CoV-2 Infection.
    J Infect. 2024 Oct 16:106318. doi: 10.1016/j.jinf.2024.106318.
    PubMed         Abstract available

  38. CHEN X, Meng X, Wu Q, Lim WW, et al
    Assessment of Neutralizing Antibody Response as a Correlate of Protection against Symptomatic SARS-CoV-2 Infections after Administration of two doses of the CoronaVac inactivated COVID-19 Vaccine: A Phase III Randomized Controlled Trial.
    J Infect. 2024 Oct 16:106315. doi: 10.1016/j.jinf.2024.106315.
    PubMed         Abstract available

  39. MADSEN AMR, Gehrt L, Schaltz-Buchholzer F, Moller S, et al
    Evaluating the effect of BCG vaccination for non-specific protection from infection in senior citizens during the COVID-19 pandemic: a randomised clinical trial.
    J Infect. 2024 Oct 16:106319. doi: 10.1016/j.jinf.2024.106319.
    PubMed         Abstract available

  40. MARCHESE AM, Fries L, Beyhaghi H, Vadivale M, et al
    Mechanisms and Implications of IgG4 Responses to SARS-CoV-2 and Other Repeatedly Administered Vaccines.
    J Infect. 2024 Oct 15:106317. doi: 10.1016/j.jinf.2024.106317.
    PubMed         Abstract available

  41. LI Y, Zhang X, Yi J, Chen Y, et al
    Synergistic evolution: the dynamic adaptation of SARS-CoV-2 and human protective immunity in the real world.
    J Infect. 2024 Oct 9:106310. doi: 10.1016/j.jinf.2024.106310.
    PubMed         Abstract available

  42. ALOISIO GM, Nagaraj D, Murray AM, Schultz EM, et al
    Infant-derived human nasal organoids exhibit relatively increased susceptibility, epithelial responses, and cytotoxicity during RSV infection.
    J Infect. 2024;89:106305.
    PubMed         Abstract available

  43. AMARILLA-IRUSTA A, Zenarruzabeitia O, Sevilla A, Sanda V, et al
    CD151 identifies a NK cell subset that is enriched in COVID-19 patients and correlates with disease severity.
    J Infect. 2024 Oct 5:106304. doi: 10.1016/j.jinf.2024.106304.
    PubMed         Abstract available

  44. FYLES M, Overton CE, Ward T, Bennett E, et al
    Modelling multiplex testing for outbreak control.
    J Infect. 2024 Oct 1:106303. doi: 10.1016/j.jinf.2024.106303.
    PubMed         Abstract available

  45. AKSU MD, van der Ent T, Zhang Z, Riza AL, et al
    Regulation of plasma soluble receptors of TNF and IL-1 in patients with COVID-19 differs from that observed in sepsis.
    J Infect. 2024 Sep 30:106300. doi: 10.1016/j.jinf.2024.106300.
    PubMed         Abstract available

  46. DEHLIA A, Guthridge MA
    The persistence of Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS) after SARS-CoV-2 infection: A systematic review and meta-analysis.
    J Infect. 2024 Sep 29:106297. doi: 10.1016/j.jinf.2024.106297.
    PubMed         Abstract available

  47. BENNETT C, Hoosain Z, Koen A, Lalloo U, et al
    Immunogenicity and Safety of SARS-CoV-2 Recombinant Spike Protein Vaccine in South African People Living With and Without HIV-1 Infection: A Phase 2 Randomised Trial.
    J Infect. 2024 Sep 27:106285. doi: 10.1016/j.jinf.2024.106285.
    PubMed         Abstract available

  48. MCLEOD C, Dymock, Flanagan KL, Plebanski M, et al
    The Platform Trial In COVID-19 Priming and BOOsting (PICOBOO): the immunogenicity, reactogenicity, and safety of different COVID-19 vaccinations administered as a second booster (fourth dose) in AZD1222 primed individuals aged 50-<70 years old.
    J Infect. 2024 Sep 26:106286. doi: 10.1016/j.jinf.2024.106286.
    PubMed         Abstract available


    J Infect Dis

  49. HAMMERTON SM, Billings WZ, Hemme H, Ross TM, et al
    Estimating standard-dose and high-dose Fluzone vaccine efficacies for influenza A based on HAI titers.
    J Infect Dis. 2024 Dec 13:jiae615. doi: 10.1093.
    PubMed         Abstract available

  50. TANG Y, Boribong BP, Swank ZN, Demokritou M, et al
    COVID-19 mRNA vaccines induce robust levels of IgG but limited amounts of IgA within the oronasopharynx of young children.
    J Infect Dis. 2024 Sep 10:jiae450. doi: 10.1093.
    PubMed         Abstract available

  51. JANES H, Fisher LH, Kee JJ, Parameswaran L, et al
    Association Between SARS-CoV-2 Viral Load and COVID-19 Vaccination in 4 Phase 3 Trials.
    J Infect Dis. 2024 Sep 3:jiae400. doi: 10.1093.
    PubMed         Abstract available

  52. ANDERSON EJ, Tippett A, Begier E, Gibson T, et al
    Relative Contribution of Diagnostic Testing to the Diagnosis of Respiratory Syncytial Virus in Hospitalized Adults in the United States.
    J Infect Dis. 2024;230:1342-1351.
    PubMed         Abstract available

  53. DOTY B, Ghaswalla P, Bohn RL, Stoszek SK, et al
    Incidence of RSV in Adults: A Comprehensive Review of Observational Studies and Critical Gaps in Information.
    J Infect Dis. 2024;230:e1182-e1201.
    PubMed         Abstract available

  54. ANDRES C, Perramon-Malavez A, Creus-Costa A, Gatell A, et al
    Respiratory Viral Coinfections in Pediatric Patients in the Primary Care Setting: A Multicenter Prospective Study Within the COPEDICAT Network.
    J Infect Dis. 2024;230:1337-1341.
    PubMed         Abstract available


    J Virol

  55. PATINO-GALINDO J, Garcia-Sastre A, Kuhn JH, Rabadan R, et al
    Recombination across distant coronavirid species and genera is a rare event with distinct genomic features.
    J Virol. 2024 Nov 19:e0110024. doi: 10.1128/jvi.01100.
    PubMed         Abstract available

  56. XIONG Y, Tao K, Li T, Zhou Y, et al
    Both chebulagic acid and punicalagin inhibit respiratory syncytial virus entry via multi-targeting glycoprotein and fusion protein.
    J Virol. 2024;98:e0153624.
    PubMed         Abstract available

  57. NEAL HE, Barrett CT, Edmonds K, Moncman CL, et al
    Examination of respiratory syncytial virus fusion protein proteolytic processing and roles of the P27 domain.
    J Virol. 2024;98:e0163924.
    PubMed         Abstract available

  58. CHEN D, Zhang W, Xiao B, Xu B, et al
    Effect of wild-type vaccine doses on BA.5 hybrid immunity, disease severity, and XBB reinfection risk.
    J Virol. 2024 Nov 5:e0128524. doi: 10.1128/jvi.01285.
    PubMed         Abstract available

  59. TAKAHASHI T, Amarbayasgalan S, Ueno S, Sugiura Y, et al
    Lethal model for respiratory syncytial virus infection using C57BL/6 mice.
    J Virol. 2024;98:e0177224.
    PubMed         Abstract available

  60. STEIN SC, Hansen G, Ssebyatika G, Stroh LJ, et al
    A human monoclonal antibody neutralizing SARS-CoV-2 Omicron variants containing the L452R mutation.
    J Virol. 2024 Nov 4:e0122324. doi: 10.1128/jvi.01223.
    PubMed         Abstract available

  61. PARRY RH, Lytras S, Petrone ME, Wille M, et al
    No evidence that mutations in SARS-CoV-2 variants of concern derive from homologous fragments in gut microbiota.
    J Virol. 2024 Nov 4:e0146824. doi: 10.1128/jvi.01468.
    PubMed         Abstract available


    J Virol Methods

  62. ASHLEY CL, Bloul M, Alca S, Smith L, et al
    Optimisation of a multiplexed, high throughput assay to measure neutralising antibodies against SARS-CoV-2 variants.
    J Virol Methods. 2025;332:115073.
    PubMed         Abstract available

  63. DA SILVA JG, Arruk VG, Veiga GRLD, Sousa LVA, et al
    Quantitative and qualitative analysis of seroconversion after one year of vaccination with inactivated SARS-CoV-2 vaccine (CoronaVac(R)) in healthcare workers: Cross-sectional analytical study.
    J Virol Methods. 2025;332:115067.
    PubMed         Abstract available

  64. FIBRIANI A, Naisanu K, Yamahoki N, Kinanti DR, et al
    Development of polyclonal chicken egg yolk immunoglobulin Y (IgY) antibodies targeting SARS-CoV-2 multi-epitope antigen.
    J Virol Methods. 2025;331:115062.
    PubMed         Abstract available

  65. YAMAZAKI Y, Tanaka R, Castillo G, Macalanda AMC, et al
    Development of a concentration method for simple and sensitive detection of SARS-CoV-2 in saliva using a magnetic nanoparticle kit.
    J Virol Methods. 2025;331:115059.
    PubMed         Abstract available

  66. MDUNYELWA A, Seema C, Mabaso A, Mlambo K, et al
    Evaluation of the Seegene Allplex RV master assay for one-step simultaneous detection of eight respiratory viruses in nasopharyngeal specimens.
    J Virol Methods. 2025;331:115042.
    PubMed         Abstract available


    JAMA

  67. TADROUS M, Callaway Kim K, Hernandez I, Rothenberger SD, et al
    Differences in Drug Shortages in the US and Canada.
    JAMA. 2024 Oct 31. doi: 10.1001/jama.2024.17688.
    PubMed         Abstract available


    Lancet

  68. DZAU VJ, Laitner MH, Shambaugh EL
    Strategic imperatives for health in the USA: a roadmap for the incoming presidential administration.
    Lancet. 2024;404:2371-2379.
    PubMed         Abstract available


  69. The burden of diseases, injuries, and risk factors by state in the USA, 1990-2021: a systematic analysis for the Global Burden of Disease Study 2021.
    Lancet. 2024;404:2314-2340.
    PubMed         Abstract available


    Minerva Pediatr (Torino)

  70. MARIANI A, Tiryaki S, Harms M, Orlov V, et al
    What we learned from the COVID-19 first wave: a survey from Young Pediatric Urology Committee (YPUC) from ESPU.
    Minerva Pediatr (Torino). 2024;76:735-742.
    PubMed         Abstract available


    MMWR Morb Mortal Wkly Rep

  71. ABDIRIZAK F, Winn AK, Parikh R, Scobie HM, et al
    Surveillance of Human Adenovirus Types and the Impact of the COVID-19 Pandemic on Reporting - United States, 2017-2023.
    MMWR Morb Mortal Wkly Rep. 2024;73:1136-1141.
    PubMed         Abstract available


    PLoS Biol

  72. KUCHARSKI AJ
    Controlling minor outbreaks is necessary to prepare for major pandemics.
    PLoS Biol. 2024;22:e3002945.
    PubMed         Abstract available


    PLoS One

  73. SOEORG H, Abroi A, Pall T, Dotsenko L, et al
    Dynamics of SARS-CoV-2 lineages in children and adults in 2021 and 2022.
    PLoS One. 2024;19:e0316213.
    PubMed         Abstract available

  74. CHAE SW, Hara N, Shiroiya HR, Chen J, et al
    Being vulnerable with viewers: Exploring how medical YouTubers communicated about COVID-19 with the public.
    PLoS One. 2024;19:e0313857.
    PubMed         Abstract available

  75. GUERRERIO AL, Mateja A, MacCarrick G, Fintzi J, et al
    Cardiovascular complications in vascular connective tissue disorders after COVID-19 infection and vaccination.
    PLoS One. 2024;19:e0315499.
    PubMed         Abstract available

  76. ZAMIR MT, Ullah F, Tariq R, Bangyal WH, et al
    Machine and deep learning algorithms for sentiment analysis during COVID-19: A vision to create fake news resistant society.
    PLoS One. 2024;19:e0315407.
    PubMed         Abstract available

  77. WEBSTER M, Manoukian S, McKendrick JH, Biosca O, et al
    Exploring the gender gap in young adult mental health during COVID-19: Evidence from the UK.
    PLoS One. 2024;19:e0305680.
    PubMed         Abstract available

  78. SULTANA KAKOLY N, Hasan SMK, Hoque MM, Ratul RH, et al
    Sociodemographic factors, clinical characteristics, outcomes and short-term follow-up in COVID-19 patients with new onset hyperglycemia and pre-existing diabetes on admission in a tertiary-care hospital in Bangladesh.
    PLoS One. 2024;19:e0311508.
    PubMed         Abstract available

  79. SAMBEL AYKUTLU M, Aykutlu HC, Ozveren M, Garip R, et al
    Digital media use and its effects on digital eye strain and sleep quality in adolescents: A new emerging epidemic?
    PLoS One. 2024;19:e0314390.
    PubMed         Abstract available

  80. SU H, Yang PL, Eaton TL, Valley TS, et al
    Cognition, function, and mood post-COVID-19: Comparative analysis using the health and retirement study.
    PLoS One. 2024;19:e0315425.
    PubMed         Abstract available

  81. LE GOFF D, Perraud G, Leon M, Aujoulat P, et al
    Innovative population-based strategies for primary prevention of cardiovascular disease: A 2-year randomised control trial evaluating behavioral change led by community champions versus brief advice.
    PLoS One. 2024;19:e0314748.
    PubMed         Abstract available

  82. CHANG H, Li S, Ke X, Zhou Z, et al
    Differences in emergency hospitalization trauma patients during and after the COVID-19 pandemic.
    PLoS One. 2024;19:e0315416.
    PubMed         Abstract available

  83. BOUTHILLIER ME, Farmer Y, Calderon Ramirez C, Downar J, et al
    Public perspectives on COVID-19 triage protocols for access to critical care in extreme pandemic context.
    PLoS One. 2024;19:e0314460.
    PubMed         Abstract available

  84. SARKAR J
    To test or not to test? A new behavioral epidemiology framework for COVID-19.
    PLoS One. 2024;19:e0309423.
    PubMed         Abstract available

  85. MOBARAK H, Haddad C, Salameh P, Towair E, et al
    The relationship between self-determination and burnout: Mental health outcomes in medical residents.
    PLoS One. 2024;19:e0308897.
    PubMed         Abstract available

  86. SANTARPIA JL, Lau J, Shom D, Ratnesar-Shumate SA, et al
    Association between in situ ventilation and human-generated aerosol exposure in meatpacking plants during the COVID-19 pandemic.
    PLoS One. 2024;19:e0314856.
    PubMed         Abstract available

  87. BEIG M, Parvizi E, Navidifar T, Bostanghadiri N, et al
    Geographical mapping and temporal trends of Acinetobacter baumannii carbapenem resistance: A comprehensive meta-analysis.
    PLoS One. 2024;19:e0311124.
    PubMed         Abstract available

  88. DJAILEB A, Parker MF, Lavallee E, Stuible M, et al
    Longitudinal determination of seroprevalence and immune response to SARS-CoV-2 in a population of food and retail workers through decentralized testing and transformation of ELISA datasets.
    PLoS One. 2024;19:e0314499.
    PubMed         Abstract available

  89. ZHENG J, Li B, Jia L, Zhang J, et al
    Tumorigenicity decrease in Bcl-xL deficient MDCK cells ensuring the safety for influenza vaccine production.
    PLoS One. 2024;19:e0311069.
    PubMed         Abstract available

  90. KITAMURA K, Arita M
    Evaluation of VP4-VP2 sequencing for molecular typing of human enteroviruses.
    PLoS One. 2024;19:e0311806.
    PubMed         Abstract available

  91. LIU C, Ma H, Wang X, Cui J, et al
    A comparative study of dynamic risk spillovers among financial sectors in China before and after the epidemic.
    PLoS One. 2024;19:e0314071.
    PubMed         Abstract available

  92. UDOH E, Okonkwo O, Omoregie G, Ura-Akubo V, et al
    Service quality in decentralized community-based Covid-19 antigen rapid diagnostic testing programmes in the Federal Capital Territory, Nigeria.
    PLoS One. 2024;19:e0310294.
    PubMed         Abstract available

  93. PARK S, Bangirana P, Mupere E, Baluku RI, et al
    Association of COVID-19-related perceptions and experiences with depression and anxiety in Ugandan caregivers of young children with malaria and iron deficiency: A cross-sectional study.
    PLoS One. 2024;19:e0314409.
    PubMed         Abstract available

  94. KOSTADINOV M, Zdravevski E, Lameski P, Coelho PJ, et al
    Forecasting air pollution with deep learning with a focus on impact of urban traffic on PM10 and noise pollution.
    PLoS One. 2024;19:e0313356.
    PubMed         Abstract available

  95. MAGHSOODI E, Hasanpour E, Soleimani F, Aghal M, et al
    Evaluation of anxiety level and the factors Affecting Anxiety in health care workers in Shahid Dr. Gholipour Hospital, Bukan, Iran during COVID-19 pandemic.
    PLoS One. 2024;19:e0264916.
    PubMed         Abstract available

  96. KE Y, Yang M, Xie Y
    An empirical research based on spatial-temporal evolution of high-quality tourism development in Fujian Province of China.
    PLoS One. 2024;19:e0315221.
    PubMed         Abstract available

  97. SAENGER TR, Kapstein EB, Sircar R
    Estimating the collapse of Afghanistan's economy using nightlights data.
    PLoS One. 2024;19:e0315337.
    PubMed         Abstract available

  98. SSEMATIMBA A, Malladi S, Bonney PJ, St Charles KM, et al
    Estimating the time of Highly Pathogenic Avian Influenza virus introduction into United States poultry flocks during the 2022/24 epizootic.
    PLoS One. 2024;19:e0310733.
    PubMed         Abstract available

  99. BOCCOLINI PMM, Boclin KLS, de Sousa IMC, Boccolini CS, et al
    Use of integrative and complementary practices in Brazil during the COVID-19 pandemic.
    PLoS One. 2024;19:e0311832.
    PubMed         Abstract available

  100. GABARRELL-PASCUET A, Coll-Planas L, Alias SB, Pascual RM, et al
    Reducing loneliness and depressive symptoms in older adults during the COVID-19 pandemic: A pre-post evaluation of a psychosocial online intervention.
    PLoS One. 2024;19:e0311883.
    PubMed         Abstract available

  101. D'SOUZA GC, Yingst JM, Krebs NM, Bordner C, et al
    Using the diffusion of innovations theory to understand factors associated with COVID-19 vaccination among tobacco users.
    PLoS One. 2024;19:e0309780.
    PubMed         Abstract available

  102. WAFUBWA RN, Soler-Hampejsek E, Muluve E, Osuka D, et al
    Adolescent school retention post COVID-19 school closures in Kenya: A mixed-methods study.
    PLoS One. 2024;19:e0315497.
    PubMed         Abstract available

  103. AN Q, Wu J, Chen WH
    Using the SEIQR model with epidemic amplifier effect to predict the final outbreak size of the COVID-19 in Dalian, Liaoning province, China.
    PLoS One. 2024;19:e0307239.
    PubMed         Abstract available

  104. SARAGOSA M, Goraya F, Nowrouzi-Kia B, Gohar B, et al
    A qualitative study examining stressors among Respiratory Therapists in Ontario amidst the COVID-19 pandemic.
    PLoS One. 2024;19:e0312504.
    PubMed         Abstract available

  105. POZO JI, Cabellos B, Perez Echeverria MDP
    Has the educational use of digital technologies changed after the pandemic? A longitudinal study.
    PLoS One. 2024;19:e0311695.
    PubMed         Abstract available

  106. ROBINSON JL, Kellner JD, Crotts J, Travassos G, et al
    Accuracy of the diagnosis of pneumonia in Canadian pediatric emergency departments: A prospective cohort study.
    PLoS One. 2024;19:e0311201.
    PubMed         Abstract available

  107. ARPPO A, Barker H, Parkkila S
    Bioinformatic characterization of ENPEP, the gene encoding a potential cofactor for SARS-CoV-2 infection.
    PLoS One. 2024;19:e0307731.
    PubMed         Abstract available

  108. KE T, Livingston M, Zhang Y, Pavlyshyn D, et al
    A longitudinal study of alcohol consumption among adults in Victoria, Australia during the COVID-19 pandemic.
    PLoS One. 2024;19:e0313599.
    PubMed         Abstract available

  109. MORITA S, Tokumasu K, Otsuka Y, Honda H, et al
    Phase-dependent trends in the prevalence of myalgic encephalomyelitis / chronic fatigue syndrome (ME/CFS) related to long COVID: A criteria-based retrospective study in Japan.
    PLoS One. 2024;19:e0315385.
    PubMed         Abstract available

  110. DAGNAW TE, Delie AM, Kassie TD, Berihun S, et al
    Knowledge, attitude, and practice towards COVID-19 and associated factors among students in Ethiopia: Systematic review and meta-analysis.
    PLoS One. 2024;19:e0314451.
    PubMed         Abstract available

  111. RAHMAN MM, Pradhan MR, Ghosh MK, Rahman MM, et al
    The impact of COVID-19 pandemic on fertility behaviour in Indian states: Evidence from the National Family Health Survey (2019/21).
    PLoS One. 2024;19:e0314800.
    PubMed         Abstract available

  112. VICKERS P, Adamo L, Alfano M, Clark C, et al
    Development of a novel methodology for ascertaining scientific opinion and extent of agreement.
    PLoS One. 2024;19:e0313541.
    PubMed         Abstract available

  113. SUGIURA Y, Shimizu K, Takahashi T, Ueno S, et al
    Amino acid T25 in the substrate-binding domain of SARS-CoV-2 nsp5 is involved in viral replication in the mouse lung.
    PLoS One. 2024;19:e0312800.
    PubMed         Abstract available


    Proc Natl Acad Sci U S A


  114. Correction for Rockey et al., Ventilation does not affect close-range transmission of influenza virus in a ferret playpen setup.
    Proc Natl Acad Sci U S A. 2024;121:e2424158121.
    PubMed        


    Vaccine

  115. WILLIAMS JTB, Ritger C, Holliman BD, Huebschmann AG, et al
    Staff and caregivers' perceptions of digital storytelling to increase influenza vaccine confidence in an urban safety-net healthcare system.
    Vaccine. 2024;45:126572.
    PubMed         Abstract available

  116. XIA M, Huang P, Vago FS, Jiang W, et al
    Pseudovirus nanoparticles targeting the receptor binding HA1 domains of influenza viruses elicited high HA1-specific antibody responses and protected mice against mortality caused by influenza virus challenges.
    Vaccine. 2024 Dec 7:126585. doi: 10.1016/j.vaccine.2024.126585.
    PubMed         Abstract available

  117. KAPLAN BS, Souza CK, Kimble JB, Brand MW, et al
    A neuraminidase-based inactivated influenza virus vaccine significantly reduced virus replication and pathology following homologous challenge in swine.
    Vaccine. 2024 Dec 6:126574. doi: 10.1016/j.vaccine.2024.126574.
    PubMed         Abstract available

  118. MARCHESE AM, Beyhaghi H, Rousculp MD, Huang V, et al
    Local and systemic reactogenicity after mRNA and protein-based COVID-19 vaccines compared to meningococcal vaccine (MenACWY) in a UK blinded, randomized phase 2 trial (COV-BOOST).
    Vaccine. 2025;44:126569.
    PubMed         Abstract available

  119. FILIMONOVIC J, Stosic M, Gazibara T, Dotlic J, et al
    The trend in national childhood immunization program coverage throughout Serbian communities in Kosovo and Metohija from 2003 to 2022: pre-COVID-19 period vs. COVID-19 pandemic.
    Vaccine. 2025;44:126576.
    PubMed         Abstract available

  120. PICHE-RENAUD PP, Drover SSM, Austin PC, Morris SK, et al
    COVID-19 vaccine effectiveness against severe omicron-related outcomes in children aged 5 to 11 years in Ontario: A Canadian immunization research network (CIRN) study.
    Vaccine. 2024 Nov 30:126539. doi: 10.1016/j.vaccine.2024.126539.
    PubMed         Abstract available

  121. HARTEVELD LM, van Leeuwen LM, Euser SM, Smit LJ, et al
    Respiratory syncytial virus (RSV) prevention: Perception and willingness of expectant parents in the Netherlands.
    Vaccine. 2025;44:126541.
    PubMed         Abstract available

  122. COSMA C, Radi A, Cattano R, Zanobini P, et al
    Exploring Chatbot contributions to enhancing vaccine literacy and uptake: A scoping review of the literature.
    Vaccine. 2024;44:126559.
    PubMed         Abstract available

  123. FLORES D, Luna EM
    The effectiveness of vaccines against COVID-19 in Mexico: A time series approach.
    Vaccine. 2024;44:126565.
    PubMed         Abstract available

  124. THIEM VD, Anh DD, Ha VH, Van Thom N, et al
    Safety and immunogenicity of an inactivated recombinant Newcastle disease virus vaccine expressing SARS-CoV-2 spike: A randomised, comparator-controlled, phase 2 trial.
    Vaccine. 2024;44:126542.
    PubMed         Abstract available

  125. WANG Q, Yang L, Li L, Xiu S, et al
    Investigating parental perceptions of respiratory syncytial virus (RSV) and attitudes to RSV vaccine in Jiangsu, China: Insights from a cross-section study.
    Vaccine. 2024;44:126570.
    PubMed         Abstract available

  126. GEMANDER N, Kemlin D, Depickere S, Kelkar NS, et al
    COVID-19 vaccine responses are influenced by distinct risk factors in naive and SARS-CoV-2 experienced hemodialysis recipients.
    Vaccine. 2024;44:126544.
    PubMed         Abstract available

  127. BLUKACZ A, Obach A, Vasquez P, Campana C, et al
    Determinants of COVID-19 and non-COVID-19 vaccine confidence in low- and middle-income countries: A systematic review of qualitative evidence and thematic synthesis.
    Vaccine. 2024;44:126546.
    PubMed         Abstract available

  128. AMODIO D, Angelidou A, Cotugno N, Sherman AC, et al
    Biomarkers of vaccine safety and efficacy in vulnerable populations: Lessons from the fourth international precision vaccines conference.
    Vaccine. 2024;43.
    PubMed         Abstract available

  129. DE LIMA EDS, Antunes MOB, de Souza JS, Jones MH, et al
    Effectiveness of BNT162b2 and CoronaVac against COVID-19-related severe outcomes among children and adolescents: A Brazilian nationwide cohort study.
    Vaccine. 2025;44:126550.
    PubMed         Abstract available

  130. DEAN NE, Halloran ME, Zarnitsyna VI
    Poor vaccine responders mask the true trend in vaccine effectiveness against progression to severe disease.
    Vaccine. 2024;43.
    PubMed         Abstract available

  131. LEE M, Qin C, Lee Y, Deng J, et al
    COVID-19 vaccine acceptance and 5C psychological antecedents amid the omicron surge in South Korea and China.
    Vaccine. 2024;43.
    PubMed         Abstract available

  132. DE OLIVEIRA LA, de Morais IRB, Marchioro SB, de Almeida GB, et al
    Assessment of the BNT162B2 COVID-19 vaccine immune response in Brazilian indigenous adolescents.
    Vaccine. 2024;43.
    PubMed         Abstract available

  133. MEELDIJK A, Vandeberg L, Akkermans R, Hautvast J, et al
    How text message reminders increase COVID-19 booster vaccine uptake: Two randomized controlled trials.
    Vaccine. 2024;43.
    PubMed         Abstract available

  134. LOCKMAN A, Callaghan T, Blackburn CC, Colwell B, et al
    Vaccine spillover effects in Africa: A cross-national study of vaccine spillover and confidence in Kenya, Nigeria, and South Africa.
    Vaccine. 2024;43.
    PubMed         Abstract available

  135. JASTORFF A, Gymnopoulou E, Salas J, Merrall E, et al
    Safety and immunogenicity of the Ad26/protein preF RSV vaccine in adults aged 18 to 59 years with and without at-risk comorbidities for severe respiratory syncytial virus disease: A phase 3, randomized, controlled, immunobridging trial.
    Vaccine. 2024;43.
    PubMed         Abstract available

  136. REGAN AK, Couture MC, Callaghan T, Agnew B, et al
    Modification and validation of a vaccine hesitancy scale for adolescent COVID-19 vaccination.
    Vaccine. 2024;43.
    PubMed         Abstract available

  137. LOPEZ-MACIAS C, Torres M, Armenta-Copca B, Wacher NH, et al
    Phase II study on the safety and immunogenicity of single-dose intramuscular or intranasal administration of the AVX/COVID-12 "Patria" recombinant Newcastle disease virus vaccine as a heterologous booster against COVID-19 in Mexico.
    Vaccine. 2024;43.
    PubMed         Abstract available

  138. GWAK E, Choe SA, Bolormaa E, Choe YJ, et al
    Relative effectiveness of homologous NVX-CoV2373 and BNT162b2 COVID-19 vaccinations in South Korea.
    Vaccine. 2024;43.
    PubMed         Abstract available

  139. WILLIAMS E, Echeverri Tribin F, Carreno JM, Krammer F, et al
    Proteomic signatures of vaccine-induced and breakthrough infection-induced host responses to SARS-CoV-2.
    Vaccine. 2024;43.
    PubMed         Abstract available

  140. MATTES F, Dratva J, Schmelzer S, Wagner A, et al
    The association between service experience in vaccination centers and expectation confirmation as a driver of future vaccination intentions: Results from a survey among users of a Swiss mass COVID-19 vaccination center.
    Vaccine. 2024;43.
    PubMed         Abstract available

  141. AGUIRRE-CAMACHO A, Hidalgo B, Rash JA
    Exposure to objective/sensationalist information moderates associations between psychological factors and COVID-19 anti-vaccination attitudes: An experimental study.
    Vaccine. 2024;43.
    PubMed         Abstract available

  142. HAEBERER M, Lopez-Ibanez de Aldecoa A, Seabroke S, Ramirez Agudelo JL, et al
    Economic burden of children hospitalized with respiratory syncytial virus infection in Spain, 2016-2019.
    Vaccine. 2025;43.
    PubMed         Abstract available

  143. DENG Y, Hayes KN, Zhao Y, Chachlani P, et al
    Variation in the time to complete the primary COVID-19 vaccine series by race, ethnicity, and geography among older US adults.
    Vaccine. 2024;43.
    PubMed         Abstract available

  144. STEFFENS MS, Bolsewicz KT, King C, Bullivant B, et al
    Australian parents' experiences with adolescent age-based vaccinations during the COVID-19 pandemic.
    Vaccine. 2024;43.
    PubMed         Abstract available

  145. LE MARCHAND C, Singson JRC, Clark A, Shah D, et al
    Multisystem inflammatory syndrome in children (MIS-C) cases by vaccination status in California.
    Vaccine. 2024;43.
    PubMed         Abstract available

  146. DELARUELLE K, Lermytte E, Bockstal M, Vuolanto P, et al
    Unraveling COVID-19 vaccine hesitancy in Europeans 50 and older through a lens of preventive practices.
    Vaccine. 2024;43.
    PubMed         Abstract available

  147. KIM SA, Maeda M, Murata F, Fukuda H, et al
    Effect of COVID-19 vaccination on the risk of developing post-COVID conditions: The VENUS study.
    Vaccine. 2024;43.
    PubMed         Abstract available

  148. MOHD HISHAM AA, Mat Yassim AS, Suppian R, Azlan M, et al
    Comparable and sustained levels of S1-RBD-IgG and S1-RBD-IgA in BNT162b2 homologous and CoronaVac-BNT162b2 heterologous booster vaccination: A 22-month prospective study in Malaysia.
    Vaccine. 2024;42:126471.
    PubMed         Abstract available

  149. CHARLAND K, Quach C, Papenburg J, Pierce L, et al
    Parental decisions regarding the vaccination of children and adolescents against SARS-CoV-2 from 2020 to 2023: A descriptive longitudinal study of parents and children in Montreal, Canada.
    Vaccine. 2024;43.
    PubMed         Abstract available

  150. HOFSTETTER AM, Klein EJ, Strelitz B, Selvarangan R, et al
    On-time childhood vaccination before and during the COVID-19 pandemic in seven communities: Findings from the New Vaccine Surveillance Network.
    Vaccine. 2024;42:126455.
    PubMed         Abstract available

  151. WHITE TM, Lazarus JV, Rabin KH, Ratzan SC, et al
    Emerging global patterns of COVID-19 vaccine information fatigue in 23 countries in 2023.
    Vaccine. 2024;42:126475.
    PubMed         Abstract available

  152. EBERHARDT J, Al-Qerem W, Ling J
    Comparing COVID-19 booster vaccine acceptance in the United Kingdom, Germany, Austria, and Jordan: The role of protection motivation theory, conspiracy beliefs, social media use and religiosity.
    Vaccine. 2024;42:126474.
    PubMed         Abstract available

  153. MCGREGOR R, Paterson A, Lavender B, Hooker C, et al
    The SARS-CoV-2 neutralising antibody profile of New Zealand adults in 2023: Impact of vaccination and infection.
    Vaccine. 2024;42:126482.
    PubMed         Abstract available

  154. LENTAKIS E, Seale H, Lazarus R, Mounier-Jack S, et al
    Exploring the delivery of adult vaccination outside of primary care settings: A mixed methods scoping review.
    Vaccine. 2024;42:126458.
    PubMed         Abstract available

  155. HO TC, Chuang SC, Hung KC, Chang CC, et al
    Exploring risk factors for Raynaud's phenomenon post COVID-19 vaccination.
    Vaccine. 2024;42:126470.
    PubMed         Abstract available

  156. LENTAKIS E, Seale H, Lazarus R, Mounier-Jack S, et al
    Exploring the attitudes and practices of adult service users and providers towards vaccination in non-primary care settings: A mixed methods scoping review.
    Vaccine. 2024;42:126472.
    PubMed         Abstract available

  157. JORDAN E, Jenkins V, Silbernagl G, Chavez MPV, et al
    A multivalent RSV vaccine based on the modified vaccinia Ankara vector shows moderate protection against disease caused by RSV in older adults in a phase 3 clinical study.
    Vaccine. 2024;42:126427.
    PubMed         Abstract available

  158. NG AJJ, Teo DCH, Dorajoo SR, Yap AJY, et al
    Acute autoimmune hepatitis following COVID-19 mRNA vaccination: A population-based study using electronic health records in Singapore.
    Vaccine. 2024;42:126462.
    PubMed         Abstract available

  159. DARKO DM, Seaneke SK, Karikari-Boateng E, Nkansah E, et al
    Safety of mRNA COVID-19 vaccines among persons 15- years and above in Ghana: A cohort event monitoring study.
    Vaccine. 2024;42:126460.
    PubMed         Abstract available

  160. AB RAHMAN N, King TL, Peariasamy KM, Sivasampu S, et al
    Risk of major adverse cerebro-cardiovascular events following BNT162b2, CoronaVac, and ChAdOx1 vaccination and SARS-CoV-2 infection: A self-controlled case-series study.
    Vaccine. 2024;42:126465.
    PubMed         Abstract available

  161. SHARFF KA, Tandy TK, Lewis PF, Johnson ES, et al
    Incidence of ischemic stroke after COVID-19 bivalent booster vaccination in an integrated health system.
    Vaccine. 2024;42:126440.
    PubMed         Abstract available

  162. WICKLINE MM, Carpenter PA, Harris JR, Iribarren SJ, et al
    Vaccine hesitancy and routine revaccination among adult HCT survivors in the United States: A convergent mixed methods analysis.
    Vaccine. 2024;42:126374.
    PubMed         Abstract available

  163. HARRACHE A, Saker K, Mokdad B, Generenaz L, et al
    Anti-RBD IgG dynamics following infection or vaccination.
    Vaccine. 2024;42:126464.
    PubMed         Abstract available

  164. MA SH, Chen TL, Ou WF, Chao WC, et al
    The risk of postherpetic neuralgia in COVID-19 vaccination-associated herpes zoster: A retrospective cohort study using TriNetX.
    Vaccine. 2024;42:126451.
    PubMed         Abstract available

  165. EVIATAR T, Ziv A, Oved A, Miller-Barmak A, et al
    Longitudinal safety and efficacy of the BNT162b2 mRNA COVID-19 vaccine in children aged 4-11 years with juvenile-onset autoimmune inflammatory rheumatic diseases: A prospective multicenter study.
    Vaccine. 2024;42:126426.
    PubMed         Abstract available

  166. NAZARENO AL, Newall AT, Muscatello DJ, Hogan AB, et al
    Modelling the epidemiological impact of maternal respiratory syncytial virus (RSV) vaccination in Australia.
    Vaccine. 2024;42:126418.
    PubMed         Abstract available

  167. SANO K, Kurosawa T, Horikawa K, Kimura Y, et al
    Cellular and humoral immunity and IgG subclass distribution after omicron XBB.1.5 monovalent vaccination in Japan.
    Vaccine. 2024;42:126452.
    PubMed         Abstract available

  168. NUZHATH T, Colwell B, Callaghan T, Hotez P, et al
    Pediatric COVID-19 vaccine hesitancy among pregnant and post-partum women: A mixed-method study.
    Vaccine. 2024;42:126420.
    PubMed         Abstract available

  169. EIDEN AL, Drakeley S, Modi K, Mackie D, et al
    Attitudes and beliefs of healthcare providers toward vaccination in the United States: A cross-sectional online survey.
    Vaccine. 2024;42:126437.
    PubMed         Abstract available

  170. COCKERILL R, Horney JA, Penta SC, Silver A, et al
    Factors associated with COVID-19 vaccination or intent to be vaccinated across three U.S. states.
    Vaccine. 2024;42:126457.
    PubMed         Abstract available

  171. TOP KA, Shulha HP, Muller MP, Valiquette L, et al
    Participant-reported neurological events following immunization in the Canadian National Vaccine Safety Network-COVID-19 vaccine (CANVAS-COVID) study.
    Vaccine. 2024;42:126445.
    PubMed         Abstract available

  172. HSIEH HC, Chen CC, Liu WC, Wu SC, et al
    Intranasal booster with SARS-CoV-2 RBD protein fused to E. coli enterotoxin a subunit after primary mRNA vaccination in mice.
    Vaccine. 2024;42:126448.
    PubMed         Abstract available

  173. SEDAGHAT M, Karami B, Najafi F, Shadmani FK, et al
    Gender differences in adverse effects following the second dose of AstraZeneca COVID-19 vaccine: a cross-sectional study among healthcare workers.
    Vaccine. 2024;42:126424.
    PubMed         Abstract available

  174. DOYON-PLOURDE P, Farley R, Krishnan R, Tunis M, et al
    Direct quantitative comparison of benefits and risks of COVID-19 vaccines used in National Immunization Technical Advisory Groups Guidance during the first two years of the pandemic.
    Vaccine. 2024;42:126406.
    PubMed         Abstract available

  175. VYSE A, Wright H, Begier E
    Estimating adult accident and emergency attendances in English hospitals attributed to respiratory syncytial virus.
    Vaccine. 2024;42:126412.
    PubMed         Abstract available

  176. PASCOE KM, Bishop S, Ci X, Ramirez M, et al
    Factors that shape COVID-19 pediatric vaccine decision-making in rural agricultural communities: A qualitative study.
    Vaccine. 2024;42:126389.
    PubMed         Abstract available

  177. HOJO-SOUZA NS, de Castro JT, Rivelli GG, Azevedo PO, et al
    SpiN-Tec: A T cell-based recombinant vaccine that is safe, immunogenic, and shows high efficacy in experimental models challenged with SARS-CoV-2 variants of concern.
    Vaccine. 2024;42:126394.
    PubMed         Abstract available

  178. ALANSARI KDH, Buhl C, Thabit AK, Badr AF, et al
    Validation of the Arabic translation of the vaccination attitudes examination (VAX) scale.
    Vaccine. 2024;42:126411.
    PubMed         Abstract available

  179. EARP M, Meng L, Black CL, Carter RJ, et al
    Using regression tree analysis to examine demographic and geographic characteristics of COVID-19 vaccination trends over time, United States, May 2021-April 2022, National Immunization Survey Adult COVID Module.
    Vaccine. 2024;42:126372.
    PubMed         Abstract available

  180. PATRICK-SMITH M, Emary K, Hodgson SH, Thomas TM, et al
    Roles and responsibilities of participants, researchers, and the media in the communication of vaccine trials: Experience from the United Kingdom's first COVID-19 vaccine trial.
    Vaccine. 2024;42:126391.
    PubMed         Abstract available

  181. LYU X, Liu X, Hong H
    Validation of the Chinese version of the vaccine conspiracy beliefs scale during COVID-19 pandemic and its correlates.
    Vaccine. 2024;42:126395.
    PubMed         Abstract available

  182. SOTOODEH A, Hedberg P, Granath F, Alfven T, et al
    Sociodemographic determinants of COVID-19 vaccination in adolescents in Stockholm, Sweden.
    Vaccine. 2024;42:126388.
    PubMed         Abstract available

  183. ENGLAND A, Sung J, Deulofeu M, Soler LF, et al
    Variant-specific neutralising antibodies levels induced by the PHH-1 V SARS-CoV-2 vaccine (Bimervax(R)) by HIPRA.
    Vaccine. 2024;42:126386.
    PubMed         Abstract available

  184. BERNADIN O, Cochin M, Driouich JS, Laprie C, et al
    Preclinical evaluation in hamster model of the mRNA COVID-19 vaccine candidate AfriVac 2121 (Wuhan) produced under the WHO/MPP mRNA Technology Transfer Programme.
    Vaccine. 2024;42:126378.
    PubMed         Abstract available

  185. AVERIN A, Sato R, Begier E, Gessner BD, et al
    Annual public health and economic burden of medically attended respiratory syncytial virus illnesses among US adults.
    Vaccine. 2024;42:126323.
    PubMed         Abstract available

  186. LAEMMLE-RUFF I, Fryk JJ, Shenton P, Clothier HJ, et al
    Detailed review of mortality reported following COVID-19 vaccination in Victoria, Australia: 2021-2023.
    Vaccine. 2024;42:126368.
    PubMed         Abstract available

  187. WEE LE, Malek MIBA, Tan J, Chiew C, et al
    Risk of death and cardiovascular events following COVID-19 vaccination or positive SARS-CoV-2 test amongst adult Singaporeans during omicron transmission.
    Vaccine. 2024;42:126356.
    PubMed         Abstract available

  188. FOTAKIS EA, Picasso E, Sacco C, Petrone D, et al
    Impact of the 2023/24 autumn-winter COVID-19 seasonal booster campaign in preventing severe COVID-19 cases in Italy (October 2023-March 2024).
    Vaccine. 2024;42:126375.
    PubMed         Abstract available

  189. PRY JM, McCullough K, Lai KW, Lim E, et al
    Defining long COVID using a population-based SARS-CoV-2 survey in California.
    Vaccine. 2024;42:126358.
    PubMed         Abstract available

  190. KRAUSE KD, D'Avanzo PA, Karr AG, Rhem C, et al
    Vaccination uptake in LGBTQ adults in two US states: Findings from the QVax study.
    Vaccine. 2024;42:126320.
    PubMed         Abstract available

  191. SHIU EYC, Cheng SMS, Martin-Sanchez M, Au NYM, et al
    Durability for 12 months of antibody response to a booster dose of monovalent BNT162b2 in adults who had initially received 2 doses of inactivated vaccine.
    Vaccine. 2024;42:126317.
    PubMed         Abstract available

  192. VAN HEESBEEN R, Bastian AR, Omoruyi E, Rosen J, et al
    Immunogenicity and safety of different dose levels of Ad26.RSV.preF/RSV preF protein vaccine in adults aged 60 years and older: A randomized, double-blind, placebo-controlled, phase 2a study.
    Vaccine. 2024;42:126273.
    PubMed         Abstract available

  193. CHANG JY, Chang M, Huang S, Bosco J, et al
    COVID-19 vaccine uptake in a predominantly minoritized cohort hospitalized during the early pandemic in New York City.
    Vaccine. 2024;42:126260.
    PubMed         Abstract available

  194. CHUN J, Yoon D, Nowakowska A, Lee HD, et al
    Delivery of SARS-CoV-2 spike and membrane genes in a single Baculoviral vector enhance the immune breadth against SARS-CoV-2 variants of concern.
    Vaccine. 2024;42:126355.
    PubMed         Abstract available

  195. CANETTI M, Barda N, Lustig Y, Weiss-Ottolenghi Y, et al
    Risk factors and correlates of protection against XBB SARS-CoV-2 infection among health care workers.
    Vaccine. 2024;42:126308.
    PubMed         Abstract available

  196. BLASCO A, Royuela A, Garcia-Gomez S, Gomez-Lozano N, et al
    Association of SARS-CoV-2 immunoserology and vaccination status with myocardial infarction severity and outcome.
    Vaccine. 2024;42:126305.
    PubMed         Abstract available


    Virus Res

  197. KOMAMI M, Komu JG, Ishiguro Y, Sasaki M, et al
    Detection of antibodies against H5 subtype highly pathogenic avian influenza viruses in multiple raccoons in Tokachi District, Hokkaido, Japan, from 2022 to 2023.
    Virus Res. 2024 Dec 15:199515. doi: 10.1016/j.virusres.2024.199515.
    PubMed         Abstract available

  198. MAO B, Le-Trilling VTK, Tang H, Hu J, et al
    Diphyllin elicits a doubled-pronged attack on the entry of SARS-CoV-2 by inhibiting cathepsin L and furin.
    Virus Res. 2024;350:199485.
    PubMed         Abstract available

  199. GIRMA A
    Biology of human respiratory syncytial virus: Current perspectives in immune response and mechanisms against the virus.
    Virus Res. 2024;350:199483.
    PubMed         Abstract available

  200. KUROSE M, Yamamoto A, Elsayed AMA, Lawal-Ayinde BM, et al
    Viral coexistence and insertional mutations in the ORF8 region of SARS-CoV-2: A possible mechanism of nucleotide insertion.
    Virus Res. 2024;350:199478.
    PubMed         Abstract available

  201. NO JS, Noh JY, Lee CY, Kim IH, et al
    Dynamics of SARS-CoV-2 variants during the XBB wave in the Republic of Korea.
    Virus Res. 2024;350:199471.
    PubMed         Abstract available

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