Tuesday, May 27, 2025

Environmental #monitoring and spatiotemporal #trend #analysis of avian #influenza virus in #Xinjiang, 2021-2023

Abstract

Background

Avian influenza, a significant threat to public health, requires monitoring for the development of control strategies. This study aims to analyze the spatiotemporal distribution of avian influenza virus in the external environment of Xinjiang from 2021 to 2023, to enhance understanding of its transmission patterns and provide a scientific basis for public health response measures.

Methods

A total of 3913 avian-related environmental samples were collected from nine monitoring areas in Xinjiang. Sample types included poultry drinking water, meat cutting boards, cage surfaces, feces, and wastewater. Real-time RT-PCR was used to detect nucleic acid for H5, H7, and H9 subtypes. Data were statistically analyzed using Excel and SPSS, and spatial distribution was visualized through Kriging interpolation using ArcGIS.

Results

Among the collected samples, 810 tested positive, with an overall positivity rate of 20.70%. The H9 subtype was predominant, accounting for 85.43% of positive samples. Significant differences in detection rates were observed across different years, regions, sample types, and monitoring sites. Temporally, the positive rate showed an upward trend from 2021 to 2023, with higher positive rates in January and July. Geographically, Aksu, Turpan, and Ili were identified as high-risk areas. Urban and rural live poultry markets had the highest positivity rate (24.31%), and poultry drinking water, cage surfaces, and cleaning wastewater samples showed relatively high detection rates. Kriging analysis revealed several high-risk zones for virus presence.

Conclusion

This study provides crucial information for understanding the epidemiological characteristics of avian influenza virus in the external environment of Xinjiang. The H9 subtype was found to be predominant, with notable seasonal and regional variations. Live poultry markets were identified as key risk sites. These findings underscore the need for continuous surveillance and offer theoretical support for developing targeted prevention and control strategies. However, the limited scope of monitoring suggests that broader and longer-term studies are needed to better understand subtype interactions and epidemic risks.

Source: BMC Infectious Diseases, https://bmcinfectdis.biomedcentral.com/articles/10.1186/s12879-025-11155-3

____

Novel Highly Pathogenic Avian #Influenza A #H5N1 Triple #Reassortant in #Argentina, 2025

Abstract

Genomic sequencing of re-emerging highly pathogenic avian influenza A(H5N1) virus detected in Argentina in February 2025 revealed novel triple-reassortant viruses containing gene segments from Eurasian H5N1 and low pathogenic viruses from South and North American lineages. These findings underscore continued evolution and diversification of clade 2.3.4.4b H5N1 in the Americas.

Source: BioRxIV, https://www.biorxiv.org/content/10.1101/2025.05.23.655175v1

____

Characteristics of the first confirmed case of #human #infection with #mpox virus clade Ib in #China

Abstract

Mpox clade Ib is significant as it is associated with human cases and plays a key role in understanding the transmission and public health implications of mpox outbreaks. Here we present a case report of the first confirmed human infection of clade Ib in China, which occurred in December 2025 in Zhejiang Province. The case was a 28-year-old woman from South Africa who had sexual contact with an asymptomatic man from the Democratic Republic of the Congo. She presented with disseminated vesicular lesions on the extremities, face, buttocks, trunk, palms, and dorsum of the hands, but lesions were absent from the oral cavity, perineum, and anus. By the 18th day post-onset (DPO), only vesicles remained on the dorsum of the right foot and in the finger web spaces, with complete resolution by the 24th DPO. Among 59 consecutive samples collected, 55 tested positive for mpox virus. Oropharyngeal swabs turned negative by the 16th DPO, while skin lesion samples, urine samples, and scab specimens remained positive through the 20th DPO. Consecutive scab samples consistently exhibited high viral loads. In total, 211 contacts of the symptomatic patient were identified, and no secondary cases occurred. This study underscores the importance of multisite sampling for diagnostic sensitivity, highlights the transmission risk associated with asymptomatic sexual contact, and emphasizes the need for refined contact definitions and management strategies. Further research is needed to explore infection risks across different types of exposure.

Source: Nature Communications, https://www.nature.com/articles/s41467-025-60217-2

____

Avian #Influenza in #Ireland: A Spatiotemporal, Subtype, and Host-Based Analysis (1983-2024)

Abstract

Avian influenza virus (AIV) is a significant global concern, causing widespread mortality in wild birds, domestic poultry and most recently wild and domestic mammals. This study presents a retrospective analysis of AIV detections in the Republic of Ireland. Data was sourced from official surveillance databases, peer-reviewed literature and grey literature sources. Spatio-temporal, host-specific and subtype patterns were assessed using descriptive statistics, chi-square tests, linear regression and kernel density estimations. A total of 2,888 confirmed AIV detections were recorded from 25 of Ireland's 26 counties. Wild birds accounted for 98.7% of detections, with domestic birds comprising 1.3% and two detections in foxes. H5N1 was the most prevalent subtype (96.7%) followed by H5N8 and H6N1. Spatial clustering was observed in urban areas, particularly Dublin. The highest seasonal peak occurred during summer, contrasting with traditional winter-associated patterns. Several detections occurred in migratory species outside of typical residency periods, suggesting potential climate-related shifts in migration behaviour. This study represents the first review of AIV surveillance data in Ireland to date. The findings highlight evolving patterns in virus distribution, seasonality and host dynamics, with implications for national surveillance strategies. Continued cross-species monitoring and integration of ecological data are essential to inform effective management strategies.

Source: BioRxIV, https://www.biorxiv.org/content/10.1101/2025.05.26.656175v1

____

Comparative #risk #assessment of spread of highly pathogenic avian #influenza #H5 viruses in French #broiler and layer sectors.

Abstract

Since 2015, French poultry production is threatened almost every year by a reintroduction of highly pathogenic avian influenza H5 viruses. The duck sector was the most concerned by this crisis but other sectors such as broiler, layer and turkey were also affected by outbreaks. The objective of this work was to assess the risk of highly pathogenic avian influenza H5 virus transmission from one farm to another within the French broiler and layer production network. This study used the WOAH risk assessment framework. After drawing up a scenario tree of virus transmission from one farm to another, data were collected through a literature review or through experts' elicitation. Three questionnaires were developed according to the experts' field of expertise: avian influenza, broiler and layer sectors. The experts' estimates were combined using a beta distribution weighted by their confidence level. A Monte Carlo iteration process was used to combine the different probabilities of the scenario tree and to assess the transmission risk. In the broiler sector, the highest transmission probabilities were observed if the exposed farm was an indoor broiler farm and the source a broiler farm (indoor or free-range). The high transmission probability between broiler farm integrated within the same company highlighted the role of integration in this probability. The pathways which generated the highest transmission probabilities between two integrated indoor broiler farms with a good biosecurity level are person movement, transport of feed and manure management. In the layer sector, the highest transmission probabilities were observed if the source farm was a free-range farm and the exposed farm a production farm (indoor or free-range). The pathways with the highest transmission probabilities were egg transport and person movement. The sensitivity analysis showed that the exposed farm's biosecurity had a significant impact on the transmission probability. Our results provide an insight on the role of each type of farms in the virus spread within the French broiler and layer production sectors and will be useful for the implementation of control measures such as movement restriction or vaccination.

Source: BioRxIV, https://www.biorxiv.org/content/10.1101/2024.09.11.612235v3

____

#HK PRC SAR, Avian #Influenza #Report - Week 21 '25 (excerpts): One New #Human #H5N1 Case in #China



{Excerpts}

Influenza A H5N1 Virus

-- Date: 23/05/2025, 

-- Location: China*, Guangxi Zhuang Autonomous Region, 

-- Sex: Female, 

-- Age: 53,  

-- Clinical Status: Recovered, 

-- Virus Subtype: H5N1.

(...)

Source: Centre for Health Protection, Hong Kong PRC SAR, https://www.chp.gov.hk/files/pdf/2025_avian_influenza_report_vol21_wk21.pdf

____

Monday, May 26, 2025

Global #risk #mapping of highly pathogenic avian #influenza #H5N1 and H5Nx in the light of epidemic episodes occurring from 2020 onward

Abstract

Avian influenza (AI) is a highly contagious viral disease affecting poultry and wild water birds, posing significant global challenges due to its high mortality rates and economic impacts. Highly pathogenic avian influenza (HPAI) outbreaks, particularly those caused by H5N1 and its variants, have surged since their first occurrence in 1959. The HPAI H5N1 clade 2.3.4.4b viruses have notably expanded its geographical reach, affecting numerous countries, diverse avian species, and now wild and domestic mammals. Using an ecological niche modelling approach, this study aims to elucidate the environmental factors associated with the increased HPAI H5 cases since 2020, investigate potential shifts in ecological niches, and predict new areas suitable for local viral circulation. Focusing on H5N1 and H5Nx strains, we have developed ecological niche models for HPAI case in both wild and domestic birds while considering two distinct periods: 2015-2020 and 2020-2022. Key environmental predictors include chicken and duck population density, human density, distance to water bodies, and several land cover variables. Post-2020, we observe a notable increase in the relative importance of some of these predictors, such as intensive chicken population density and cultivated vegetation. The resulting risk maps reveal notable ecological suitability for local HPAI H5 circulation in Europe, Asia, as well as North and South America, with notable expansions of the areas at risk post-2020. The spatial distribution of HPAI H5 occurrences in wild birds appears to be primarily influenced by urban areas and open water regions. Overall, global risk maps derived from our models identify regions at risk where surveillance and control measures should be prioritised. Finally, our analyses also highlight a shift in the diversity of species affected by HPAI outbreaks, with a higher variety of avian species, particularly sea birds, being impacted post-2020. This increased diversity suggests that ecological shifts in HPAI H5 circulation may be accompanied by a broader range of susceptible species. Overall, these results further contribute to the understanding of HPAI epidemiology.

Source: BioRxIV, https://www.biorxiv.org/content/10.1101/2024.11.15.623755v2

____

Sunday, May 25, 2025

Home Again, Frederick McCubbin (1884)

 


Public Domain.

Source: WikiArt, https://www.wikiart.org/en/frederick-mccubbin/home-again-1884

____

Saturday, May 24, 2025

History of Mass Transportation: The FS D445 Diesel-Electric Locomotive

 


By Gabriele Fontana - https://www.flickr.com/photos/gabry1970/5175636373/, CC BY-SA 2.0, https://commons.wikimedia.org/w/index.php?curid=109273634

Source: Wikipedia, https://it.wikipedia.org/wiki/Locomotiva_FS_D.445

____

#Coronavirus Disease Research #References (by AMEDEO, May 24 '25)

 


    AJR Am J Roentgenol

  1. SCHMITT JE, Smerconish S
    Beyond the AJR: Demystifying COVID-19-Related Brain Fog With Perfusion MRI.
    AJR Am J Roentgenol. 2025 May 21. doi: 10.2214/AJR.25.32998.
    PubMed        


    Br J Anaesth

  2. WELLER JM, Long J, Moore M, Henderson K, et al
    Effects of a national team training intervention for operating theatre teams on patient and staff outcomes: a stepped-wedge cluster-randomised trial and mixed-methods study.
    Br J Anaesth. 2025 May 16:S0007-0912(25)00230-2. doi: 10.1016/j.bja.2025.
    PubMed         Abstract available


    Clin Infect Dis

  3. NADIG N, Bhimraj A, Cawcutt K, Chiotos K, et al
    2025 Clinical Practice Guideline Update by the Infectious Diseases Society of America on the Treatment and Management of COVID-19: Vilobelimab.
    Clin Infect Dis. 2025 May 22:ciaf235. doi: 10.1093.
    PubMed         Abstract available


    Int J Infect Dis

  4. HUANG Q, Kang L, Wei X, Gong C, et al
    Epidemiology and genetic diversity of common human coronaviruses in Beijing, 2015-2023: A prospective multicenter study.
    Int J Infect Dis. 2025 May 14:107926. doi: 10.1016/j.ijid.2025.107926.
    PubMed         Abstract available


    Intensive Care Med

  5. CARLET J, Payen D, Singer M
    A critical assessment of corticosteroid trials for hospitalised patients with SARS-CoV-2 disease.
    Intensive Care Med. 2025 May 23. doi: 10.1007/s00134-025-07878.
    PubMed        


    J Infect

  6. BREUER J, Drysdale M, Walker J, Han J, et al
    Monitoring the Emergence of Resistance With Sotrovimab in Immunocompromised Patients With COVID-19: LUNAR Study.
    J Infect. 2025 May 19:106510. doi: 10.1016/j.jinf.2025.106510.
    PubMed         Abstract available

  7. QI K, Chen J, Ma X, Li D, et al
    Novel Coronaviruses Identified in Livestock: The Urgent Need to Enhance Coronavirus Surveillance to Mitigate Zoonotic Risks.
    J Infect. 2025 May 16:106512. doi: 10.1016/j.jinf.2025.106512.
    PubMed        


    J Med Virol

  8. JANOFF EN, Shih MC, Donskey C, Belitskaya-Levy I, et al
    Impact of High-Titer Convalescent Plasma on Clinical and Virologic Outcomes Among Veterans Hospitalized With SARS-CoV-2 Infection: VA CoronavirUs Research and Efficacy Studies-1 (VA CURES-1).
    J Med Virol. 2025;97:e70349.
    PubMed         Abstract available

  9. KANG J, Park J, Son Y, Kim HJ, et al
    Postacute Sequelae of COVID-19 Across 12 Major Health Domains and 141 Diseases in Individuals With Mental Illness Among COVID-19 Survivors: A Population-Based Cohort Study in South Korea.
    J Med Virol. 2025;97:e70406.
    PubMed         Abstract available

  10. CHEN Q, Tan K
    Neurovascular Barrier Protection in COVID-19: Emerging Therapeutic Targets From SARS-CoV-2 Pathogenesis.
    J Med Virol. 2025;97:e70413.
    PubMed        


    J Virol

  11. QIAN Q, Zhao S-s, Yang L, Xing G, et al
    Palmitoylation enhances the stability of porcine epidemic diarrhea virus spike protein by antagonizing its degradation via chaperone-mediated autophagy to facilitate viral proliferation.
    J Virol. 2025 May 22:e0034725. doi: 10.1128/jvi.00347.
    PubMed         Abstract available

  12. WANG Y, Cheng Y, Wang S, Liu D, et al
    Unraveling the cross-talk between a highly virulent PEDV strain and the host via single-cell transcriptomic analysis.
    J Virol. 2025 May 21:e0055525. doi: 10.1128/jvi.00555.
    PubMed         Abstract available

  13. BEAN DJ, Liang YM, Avila F, He X, et al
    Endemic coronavirus infection is associated with SARS-CoV-2 Fc receptor-binding antibodies.
    J Virol. 2025 May 19:e0055025. doi: 10.1128/jvi.00550.
    PubMed         Abstract available


    Lancet Infect Dis


  14. Molnupiravir or nirmatrelvir-ritonavir plus usual care versus usual care alone in patients admitted to hospital with COVID-19 (RECOVERY): a randomised, controlled, open-label, platform trial.
    Lancet Infect Dis. 2025 May 15:S1473-3099(25)00093.
    PubMed         Abstract available

  15. LUI GCY, Hui DSC
    Revisiting oral antivirals for COVID-19 in the hospital setting.
    Lancet Infect Dis. 2025 May 15:S1473-3099(25)00169.
    PubMed        


    N Engl J Med

  16. PRASAD V, Makary MA
    An Evidence-Based Approach to Covid-19 Vaccination.
    N Engl J Med. 2025 May 20. doi: 10.1056/NEJMsb2506929.
    PubMed        

#Influenza and Other Respiratory Viruses Research #References (by AMEDEO, May 24 '25)

 


    Am J Med

  1. LIPPI G, Sanchis-Gomar F, Lavie CJ
    The recent (2018-2022) US monthly mortality for acute myocardial infarction still peaks in December and January.
    Am J Med. 2025 Jan 18:S0002-9343(25)00035-X. doi: 10.1016/j.amjmed.2025.
    PubMed         Abstract available

  2. STAHLBERG M, Fischer K, Tahhan M, Zhao A, et al
    Post-Acute COVID-19 Syndrome: Prevalence of Peripheral Microvascular Endothelial Dysfunction and Associations With NT-ProBNP Dynamics.
    Am J Med. 2025;138:1019-1028.
    PubMed         Abstract available

  3. ZHOU T, Sawano M, Arun AS, Caraballo C, et al
    Internal Tremors and Vibrations in Long COVID: A Cross-Sectional Study.
    Am J Med. 2025;138:1010-1018.
    PubMed         Abstract available

  4. SANAL-HAYES NEM, Mclaughlin M, Hayes LD, Berry ECJ, et al
    Examining Well-Being and Cognitive Function in People With Long COVID and ME/CFS, and Age-Matched Healthy Controls: A Case-Case-Control Study.
    Am J Med. 2025;138:1029-1037.
    PubMed         Abstract available


    Ann Intern Med

  5. AMAN M, Jeevananthan A, Martinez-Cruz M, Namasingh N, et al
    Endocrinology: What You May Have Missed in 2024.
    Ann Intern Med. 2025 Apr 1. doi: 10.7326/ANNALS-25-00990.
    PubMed         Abstract available

  6. HAMED HKA, Nachman A, Riopel N, Schuster M, et al
    Infectious Diseases: What You May Have Missed in 2024.
    Ann Intern Med. 2025 Apr 1. doi: 10.7326/ANNALS-25-00925.
    PubMed         Abstract available

  7. CORONADO GD, Petrik AF, Thompson JH, Leo MC, et al
    Patient Navigation to Improve Colonoscopy Completion After an Abnormal Stool Test Result : A Randomized Controlled Trial.
    Ann Intern Med. 2025 Apr 1. doi: 10.7326/ANNALS-24-01885.
    PubMed         Abstract available


    Arch Virol

  8. CHEN T, Xu W, Duan P, Jiang S, et al
    MF59-like adjuvant containing yeast-derived squalene enhances the humoral immune response to cell-derived influenza vaccine.
    Arch Virol. 2025;170:134.
    PubMed         Abstract available


    BMC Pediatr

  9. LI W, Zhu W, Tang X, Peng Z, et al
    Similarity of immune-associated markers in COVID-19 and Kawasaki disease: analyses from bioinformatics and machine learning.
    BMC Pediatr. 2025;25:400.
    PubMed         Abstract available


    J Immunol

  10. ALLEN JD, Medina JM, Thomas MH, Lynch A, et al
    H3 hemagglutinin proteins optimized for 2018 to 2022 elicit neutralizing antibodies across panels of modern influenza A(H3N2) viruses.
    J Immunol. 2025 May 21:vkaf092. doi: 10.1093.
    PubMed         Abstract available


    J Virol

  11. NOETTGER S, Zech F, Nchioua R, Pastorio C, et al
    Role of N-linked glycosylation sites in human ACE2 in SARS-CoV-2 and hCoV-NL63 infection.
    J Virol. 2025 Mar 28:e0220224. doi: 10.1128/jvi.02202.
    PubMed         Abstract available

  12. GHIMIRE R, Shrestha R, Amaradhi R, Liu L, et al
    Toll-like receptor 7 (TLR7)-mediated antiviral response protects mice from lethal SARS-CoV-2 infection.
    J Virol. 2025 Mar 31:e0166824. doi: 10.1128/jvi.01668.
    PubMed         Abstract available

  13. XIAO X, Li S, Zheng Z, Ji Y, et al
    Targeting USP22 to promote K63-linked ubiquitination and degradation of SARS-CoV-2 nucleocapsid protein.
    J Virol. 2025 Apr 4:e0223424. doi: 10.1128/jvi.02234.
    PubMed         Abstract available

  14. ZHOU B, Gui Q, Liu C, Guo H, et al
    Structure and function of an unusual R452-dependent monoclonal antibody against SARS-CoV-2.
    J Virol. 2025 Apr 8:e0184424. doi: 10.1128/jvi.01844.
    PubMed         Abstract available

  15. KAWAKITA T, Sekiya T, Kameda Y, Nomura N, et al
    ARNAX is an ideal adjuvant for COVID-19 vaccines to enhance antigen-specific CD4(+) and CD8(+) T-cell responses and neutralizing antibody induction.
    J Virol. 2025 Apr 15:e0229024. doi: 10.1128/jvi.02290.
    PubMed         Abstract available

  16. DE AVILA AI, Soria ME, Martinez-Gonzalez B, Somovilla P, et al
    SARS-CoV-2 biological clones are genetically heterogeneous and include clade-discordant residues.
    J Virol. 2025 Apr 24:e0225024. doi: 10.1128/jvi.02250.
    PubMed         Abstract available

  17. SUN H, Yang Q, Zhang Y, Cui S, et al
    Syntaxin-6 restricts SARS-CoV-2 infection by facilitating virus trafficking to autophagosomes.
    J Virol. 2025 Apr 25:e0000225. doi: 10.1128/jvi.00002.
    PubMed         Abstract available

  18. NEGI V, Kuhn RJ
    A BSL-2 chimeric system designed to screen SARS-CoV-2 E protein ion channel inhibitors.
    J Virol. 2025 Apr 30:e0225224. doi: 10.1128/jvi.02252.
    PubMed         Abstract available

  19. ZHANG S, Xu C-L, Wang J, Xiong X, et al
    Spike proteins of coronaviruses activate mast cells for degranulation via stimulating Src/PI3K/AKT/Ca(2+) intracellular signaling cascade.
    J Virol. 2025 Apr 30:e0007825. doi: 10.1128/jvi.00078.
    PubMed         Abstract available


    PLoS One

  20. FOULKES S, Munro K, Sparkes D, Broad J, et al
    Adapting COVID-19 research infrastructure to capture influenza and respiratory syncytial virus alongside SARS-CoV-2 in UK healthcare workers winter 2022/23: Results of a pilot study in the SIREN cohort.
    PLoS One. 2025;20:e0316131.
    PubMed         Abstract available

  21. MATAS JL, Raskina K, Tong S, Forney D, et al
    Comparative analysis of influenza healthcare disparities in the United States using retrospective administrative claims from Medicaid and commercial databases, 2015-2019.
    PLoS One. 2025;20:e0321208.
    PubMed         Abstract available

  22. SKERVIN TK, Ellmers TJ, Kal EC, Young WR, et al
    Exploring the effects of wearing facemasks on stair safety characteristics in young adults.
    PLoS One. 2025;20:e0324333.
    PubMed         Abstract available

  23. PARTOUCHE N, Maumy M, Chamaraux-Tran TN, Bertrand F, et al
    Does the IL-6/KL-6 ratio distinguish different phenotypes in COVID-19 Acute Respiratory Distress Syndrome? An observational study stemmed from prospectively derived clinical, biological, and computed tomographic data.
    PLoS One. 2025;20:e0321533.
    PubMed         Abstract available

  24. OVER D, Santana E, Amaral EFL, Lakkimsetti C, et al
    A comprehensive analysis of COVID-19 vaccination behavior: The influence of religion, information sources, political leanings, and demographic factors.
    PLoS One. 2025;20:e0323815.
    PubMed         Abstract available

  25. TLHAKO N, Coetzee SK, Ajanaku OJ, Fourie E, et al
    The impact of workplace relationships on nurse-reported quality of care and patient safety in the North West Province.
    PLoS One. 2025;20:e0323620.
    PubMed         Abstract available

  26. WARD CL, Rojas Castro MY, Chakhunashvili G, Chitadze N, et al
    COVID-19 vaccine effectiveness among healthcare workers during the Omicron period in the country of Georgia, January - June 2022.
    PLoS One. 2025;20:e0311337.
    PubMed         Abstract available

  27. CARR CR, Gentile NL, Bertolli J, Szewczyk W, et al
    Comparison of long COVID, recovered COVID, and non-COVID Post-Acute Infection Syndromes over three years.
    PLoS One. 2025;20:e0323104.
    PubMed         Abstract available

  28. CHAPARRO-NARVAEZ P, Manrique Sanchez JA, Berrio-Parra L, Urrego Ricaurte DC, et al
    Accuracy of information on the underlying cause of death: An analysis in Colombia during the COVID-19 pandemic in 2021.
    PLoS One. 2025;20:e0320466.
    PubMed         Abstract available

  29. LEE Z, Tan PL, Tan-Soo JS
    Unequal gains from remote work during COVID-19 between spouses: Evidence from longitudinal data in Singapore.
    PLoS One. 2025;20:e0324113.
    PubMed         Abstract available

  30. WU H, He X, Cao Y, Gao W, et al
    Adverse events affecting recovery from seasonal influenza vaccination in the hypertensive population: A population-based pharmacovigilance analysis.
    PLoS One. 2025;20:e0310474.
    PubMed         Abstract available

  31. FENG Y, Zhou Y, Li W, Cheng Q, et al
    The relationship between family functioning and depression among adolescents in China during the normalization stage of the COVID-19 epidemic: The mediating role of resilience.
    PLoS One. 2025;20:e0322939.
    PubMed         Abstract available

  32. KARA Y, Ozkan YS, Ullah A, Hamed YS, et al
    QSPR modeling of some COVID-19 drugs using neighborhood eccentricity-based topological indices: A comparative analysis.
    PLoS One. 2025;20:e0321359.
    PubMed         Abstract available

  33. SCHRODER D, Stolting A, Mullenmeister C, Behrens GMN, et al
    Improvement in quality of life and cognitive function in Post-COVID syndrome after online occupational therapy: Results from a randomized controlled pilot study.
    PLoS One. 2025;20:e0312714.
    PubMed         Abstract available

  34. RISTYAWAN MR, Putro US, Siallagan M
    Determining resources and capabilities in complex context: A decision-making model for banks.
    PLoS One. 2025;20:e0323735.
    PubMed         Abstract available

  35. GARCIA-ESPONA I, Kanine-Ait-Zalim AA, Alarcon JA, Garcia-Espona C, et al
    Trends in orthodontic scientific contributions: An evaluation based on the American Association of Orthodontists annual sessions.
    PLoS One. 2025;20:e0324810.
    PubMed         Abstract available

  36. SANZ M, Gutierrez-Diaz I, Gonzalez H, Rodriguez-Belvis MV, et al
    Hospitalised children with COVID-19 display an aberrant intestinal microbiota and a shift in faecal compounds related with the metabolism of vitamins and lipids.
    PLoS One. 2025;20:e0323910.
    PubMed         Abstract available

  37. MARTIN MORENO V, Martinez Sanz MI, Gonzalez IS, Vazquez MR, et al
    Socio-health factors, ability to perform instrumental and basic activities of daily living, and use of assistive mobility devices during the COVID-19 pandemic: Interrelationships and impact on long-term survival.
    PLoS One. 2025;20:e0318481.
    PubMed         Abstract available

  38. JONGKEES MJ, Bogers S, de Vries RD, GeurtsvanKessel CH, et al
    Longitudinal assessment of COVID-19 vaccine immunogenicity in people with HIV stratified by CD4+ T-cell count in the Netherlands: A two-year follow-up study.
    PLoS One. 2025;20:e0323792.
    PubMed         Abstract available

  39. PARIDANS M, Dardenne N, Gillain N, Husson E, et al
    Removing barriers to COVID-19 vaccine intention in a university population: Results of a serial mediation study through the dimensions of the Health Belief Model.
    PLoS One. 2025;20:e0322881.
    PubMed         Abstract available

  40. HENDRIX N, Parikh RV, Taskier M, Walter G, et al
    Heterogeneity of diagnosis and documentation of post-COVID conditions in primary care: A machine learning analysis.
    PLoS One. 2025;20:e0324017.
    PubMed         Abstract available

  41. VIJAYAKUMAR S, Corneau E, Erqou S, Kokkirala A, et al
    Outpatient care changes and associated mortality among Veterans with heart failure during the COVID-19 pandemic.
    PLoS One. 2025;20:e0323308.
    PubMed         Abstract available

  42. DORJEE K, Sadoff RC, Mansour FR, Dorjee S, et al
    Menstrual disturbance associated with COVID-19 vaccines: A comprehensive systematic review and meta-analysis.
    PLoS One. 2025;20:e0320162.
    PubMed         Abstract available

  43. DOGBLA L, Jaber AB, Baker JS, Boudet G, et al
    Impact of COVID on the medical activity of occupational health departments.
    PLoS One. 2025;20:e0323018.
    PubMed         Abstract available

  44. BENGOLEA A, Ruiz JI, Vega CG, Manzotti M, et al
    Clinical evolution and medical resource utilization in adult patients with respiratory syncytial virus infection at a community hospital in Argentina.
    PLoS One. 2025;20:e0324735.
    PubMed         Abstract available

  45. WANDER PL, Lowy E, Korpak A, Beste LA, et al
    Association of long COVID documentation with clinical outcomes among Veterans with diabetes.
    PLoS One. 2025;20:e0324709.
    PubMed         Abstract available


    Proc Natl Acad Sci U S A

  46. FAN C, Keeffe JR, Malecek KE, Cohen AA, et al
    Cross-reactive sarbecovirus antibodies induced by mosaic RBD nanoparticles.
    Proc Natl Acad Sci U S A. 2025;122:e2501637122.
    PubMed         Abstract available


    Vaccine

  47. TIAN X, Zhou Y, Deng P, Xu N, et al
    Effectiveness and safety of a novel intranasal influenza vaccine in Chinese children: A phase IV multi-Center, randomized, double-blind, placebo-controlled clinical trial.
    Vaccine. 2025;59:127268.
    PubMed         Abstract available

  48. MYBURGH L, van Loon K, Huijbers EJM, van Beijnum JR, et al
    Guided design for the development of an evolution-proof influenza vaccine.
    Vaccine. 2025;59:127281.
    PubMed         Abstract available

  49. LIAW K, Konrath KM, Trachtman AR, Tursi NJ, et al
    DNA co-delivery of seasonal H1 influenza hemagglutinin nanoparticle vaccines with chemokine adjuvant CTACK induces potent immunogenicity for heterologous protection in vivo.
    Vaccine. 2025;59:127231.
    PubMed         Abstract available

  50. SOBLE A, Malhame M, Malvolti S, Mantel C, et al
    Identification and sizing of the current use cases for seasonal influenza vaccines.
    Vaccine. 2025 May 15:127233. doi: 10.1016/j.vaccine.2025.127233.
    PubMed         Abstract available

  51. GIANNINI F, Hogan AB, Cameron E, Le H, et al
    Estimating the impact of Western Australia's first respiratory syncytial virus immunisation program for all infants: A mathematical modelling study.
    Vaccine. 2025;56:127155.
    PubMed         Abstract available

  52. MANDVIWALA AS, Munje AK, Huckriede ALW, Arankalle VA, et al
    Immunogenicity evaluation of respiratory syncytial virus prefusogenic-F based virus-like-particles consisting of G and M proteins in mice.
    Vaccine. 2025;56:127203.
    PubMed         Abstract available

  53. PADRON-REGALADO E, Escudero Gonzalez NA, Del Carmen Selvera HN
    Morbidity of viral vaccine preventable diseases in the Mexican states bordering the U.S., 2014-2023.
    Vaccine. 2025;56:127192.
    PubMed         Abstract available

  54. BOUADDI O, Khalis M, Abdellatifi M, Seedat F, et al
    Behavioural and social drivers of vaccination among child and adult migrants in Morocco: A qualitative interview study.
    Vaccine. 2025;56:127166.
    PubMed         Abstract available

  55. SEFAT KMSR, Kulkarni R, Trinh J, Leekha A, et al
    Mucosal vaccines with STING-agonist liposomal formulations inhibit RSV (respiratory syncytial virus) replication in cotton rats.
    Vaccine. 2025;56:127183.
    PubMed         Abstract available

  56. KANESHITA S, Chambers CD, Johnson D, Kavanaugh A, et al
    Short-term side effects following COVID-19 vaccination in pregnancies complicated by autoimmune inflammatory rheumatic diseases: A prospective cohort study.
    Vaccine. 2025;56:127194.
    PubMed         Abstract available

  57. MOTTA M, Callaghan T, Ross JC, Gargano L, et al
    Promoting RSV vaccine confidence through reversal narrative (RN) messaging.
    Vaccine. 2025;56:127178.
    PubMed         Abstract available

  58. PAUL MJ, Hudda MT, Pallett S, Groppelli E, et al
    Mucosal immune responses to SARS-CoV-2 infection and COVID-19 vaccination.
    Vaccine. 2025;56:127175.
    PubMed         Abstract available

  59. KISLAYA I, Caserta M, Faye SLB, Dia OK, et al
    Evaluating the effects of a multisectoral dialogue-based COVID-19 awareness-raising intervention in a limited-resource setting: A quasi-experimental study in Senegal.
    Vaccine. 2025;56:127168.
    PubMed         Abstract available

  60. SHANKER A, Vlaev I
    The social influence of the corrections of vaccine misinformation on social media.
    Vaccine. 2025;56:127177.
    PubMed         Abstract available

  61. BAYSAC DJ, Guay M, Chen R, Dube E, et al
    Did inequalities in COVID-19 vaccination resolve over time? Insights from the Canadian Community Health Survey.
    Vaccine. 2025;56:127153.
    PubMed         Abstract available

  62. HANSEN BT, Kristoffersen AB, Stecher M
    Vaccination readiness among adults in Norway: A cross-sectional survey using the 7C model.
    Vaccine. 2025;56:127169.
    PubMed         Abstract available

  63. OHNO M, Sekiya T, Obeng-Kyeremeh R, Handabile C, et al
    Optimization of the preparation method of inactivated intact virus particle vaccine for COVID-19.
    Vaccine. 2025;56:127173.
    PubMed         Abstract available

  64. LANATA CF, Ochoa TJ, Bancalari EM, Baylor NW, et al
    Testing an experimental vaccine during a public health emergency: Lessons from a Peruvian case.
    Vaccine. 2025;56:127176.
    PubMed         Abstract available

  65. MCGRATH LJ, Khan FL, Lopez SMC, Brouillette MA, et al
    2023-2024 COVID-19 vaccine uptake among immunocompromised individuals in two US states.
    Vaccine. 2025;56:127120.
    PubMed         Abstract available


    Virus Res

  66. CHEN J, Zhao S, Yan H, Huang Y, et al
    Plasma SARS-CoV-2 nucleocapsid antigen levels are associated with lung infection and tissue-damage biomarkers.
    Virus Res. 2025;356:199580.
    PubMed         Abstract available

The State of the #World’s #Animal #Health 2025 (#WOAH, May 24 '25)

{Summary}

World Organisation for Animal Health (2025). – The State of the World’s Animal Health 2025. Paris, 124pp. https://doi.org/10.20506/woah.3586. Licence: CC BY-SA 3.0 IGO.


Foreword

Animal health is inextricably linked to human  health, the stability of ecosystems and the strength of economies. In a world facing increasingly complex global challenges – emerging infectious diseases, climate change, antimicrobial resistance and food insecurity – ensuring the health of animals is crucial. This first iteration of The State of the World’s Animal Health report is a landmark publication released by the World Organisation for Animal Health (WOAH) for its 92nd General Session of the World Assembly, which reflects our commitment to evidence-based decision-making and data-driven action. Drawing  on WOAH’s comprehensive information systems and the collective expertise of its Members and expert network, this report offers a clear, objective and timely analysis of the global animal health landscape, helping us understand the current situation and the path toward a healthier future. Animal diseases know no borders. Whether affecting livestock, wildlife or aquatic species, their impact can be devastating – threatening livelihoods, public health, food supply chains, international trade and biodiversity. Our ability to prevent, detect and respond to these threats depends on robust surveillance, strong Veterinary Services, and the effective implementation of science-based policies. This report serves as a valuable resource for the veterinary workforce, researchers, policy-makers, and all those invested in the health of animals and the resilience of our societies. It provides critical insights into disease trends, the situation of veterinary capacities worldwide and the effectiveness of interventions. Most importantly, it reinforces the message that proactive investment in animal health is an investment in global health security. In addition to an objective analysis of the current situation, the core focus of this inaugural report is vaccination – one key element of disease prevention and control. Vaccination, alongside other measures, has saved countless lives, prevented economic losses, and reduced the need for antimicrobial treatments, playing a fundamental role in the fight against antimicrobial resistance. From eradicating deadly diseases like rinderpest to controlling threats such as rabies, foot and mouth disease and avian influenza, vaccines remain a powerful tool at our disposal. Yet, access to vaccines remains uneven, and challenges persist in vaccine research, production, distribution and uptake. Strengthening global cooperation and ensuring equitable access to safe, effective vaccines, alongside other control measures must be a priority for all of us. Valuable insights provided by this report will serve the discussion of this year’s General Session Forum: “Veterinary vaccines and vaccination: from science to action – reflections for change”. Looking ahead, we must continue to strengthen our data collection and analysis, foster innovation in disease prevention, and reinforce global veterinary capacities. This report is not just a static reflection of where we are – it is a dynamic call to action. A call for deeper collaboration, greater investment, and a shared commitment to building a future where animal health is protected, global health is secured and sustainable development is realised, and food security is strengthened for generations to come. Because animal health is our health. It’s everyone’s health.

Dr Emmanuelle Soubeyran, Director General, World Organisation for Animal Health

(...)

Source: World Animal Health Organization, https://www.woah.org/en/document/the-state-of-the-worlds-animal-health-2025/

____

A G219A #hemagglutinin #substitution increases #pathogenicity and viral #replication of Eurasian avian-like #H1N1 swine #influenza viruses

Abstract

The Eurasian avian-like swine (EA) H1N1 virus has been widely prevalent in the Chinese swine population and has caused infections in human. However, knowledge regarding its pathogenic mechanisms remains limited. In this study, we analyzed the pathogenic determinants of two G4 genotype EA H1N1 viruses (A/Swine/Guangdong/SS12/2017 and A/Swine/Jiangxi/1110/2017) with differing pathogenicity by constructing a series of reassortant and mutant viruses. The HA-G219A mutation was found to be determinant of pathogenicity in mice. Subsequent analyses revealed that this mutation enhances viral replication in human cells, improves thermal stability, reduces HA activation pH, and alters receptor-binding properties. Furthermore, HA-G219A mutation may be an adaptive mutation that facilitates influenza virus adaptation to swine, with its prevalence increasing in the swine population. This mutation may support cross-species transmission of EA H1N1 swine influenza viruses or genetic exchange with other virus subtypes/genotypes, potentially contributing to the emergence of pandemic viruses. These findings improve our understanding of EA H1N1 pathogenicity and highlight the critical need for ongoing surveillance of influenza viruses in pigs.

Source: Veterinary Microbiology, https://www.sciencedirect.com/science/article/abs/pii/S0378113525002007?via%3Dihub

____

Highly Pathogenic Avian #Influenza A(#H5N1) Caused Mass Death among Black-legged #Kittiwakes (Rissa tridactyla) in #Norway, 2023

Abstract

In 2023, highly pathogenic avian influenza (HPAI) heavily affected gulls in Europe. In July, a mass mortality event was reported in the Black-legged Kittiwake (Rissa tridactyla) breeding colony at Ekkerøy in Northern Norway. The cause was confirmed to be infection with the HPAI H5N1 clade 2.3.4.4b virus, genotype EA-2022-BB. We describe the outbreak in Kittiwakes, including pathological and virological investigations, and discuss the management and zoonotic potential. With more than 15,000 dead birds reported, we estimate that the outbreak caused a reduction in the Kittiwake population at Ekkerøy of at least 50%. Diseased birds exhibited neurological signs. Necropsy of ten birds revealed a peracute fatal systemic disease, with severe lesions in the brain and pancreas co-localizing with the presence of viral RNA and antigen. Vascular expression of α2,3-linked sialic acids and viral RNA/antigen may reflect hematogenous virus spread. Further studies should investigate the long-term impact of HPAI on Kittiwake populations.

Source: BioRxIV, https://www.biorxiv.org/content/10.1101/2025.05.23.655725v1

____

Friday, May 23, 2025

#Epidemiology and Genetic Characterization of Distinct #Ebola #Sudan #Outbreaks in #Uganda

Abstract

Background

Sudan virus (SUDV) has caused multiple outbreaks in Uganda over the past two decades, leading to significant morbidity and mortality. The recent outbreaks in 2022 and 2025 highlight the ongoing threat posed by SUDV and the challenges in its containment. This study aims to characterize the epidemiological patterns and phylogenomic evolution of SUDV outbreaks in Uganda, identifying key factors influencing transmission and disease severity. 

Methods

We conducted a retrospective observational study analyzing epidemiological and genomic data from SUDV outbreaks in Uganda between 2000 and 2025. Epidemiological data were collected from official sources, including the Ugandan Ministry of Health and the World Health Organization, supplemented with reports from public health organizations. Genomic sequences of SUDV were analyzed to investigate viral evolution and identify genetic variations associated with pathogenicity and transmissibility. 

Results

The 2022 outbreak involved 164 confirmed cases and a case fatality rate (CFR) of 33.5%, with significant geographic variation in case distribution. The 2025 outbreak, still ongoing, was first detected in Kampala, with evidence of both nosocomial and community transmission. Phylogenomic analysis revealed the presence of two main genetic groups, representing Sudan and Uganda, respectively. The genetic variability of the Ugandan cluster is higher than that observed in Sudan, suggesting a greater expansion potential, which aligns with the current outbreak. Epidemiological findings indicate that human mobility, weaknesses in the health system, and delays in detection contribute to the amplification of the outbreak. 

Conclusions

Our findings underscore the importance of integrated genomic and epidemiological surveillance in understanding SUDV transmission dynamics. The recurrent emergence of SUDV highlights the need for improved outbreak preparedness, rapid response mechanisms, and international collaboration. Strengthening real-time surveillance and enhancing healthcare system resilience are critical to mitigating the impact of future outbreaks.

Source: Infectious Disease Reports, https://www.mdpi.com/2036-7449/17/3/44

____

#USA, Monitoring for Avian #Influenza A(#H5) Virus In #Wastewater (CDC, May 23 '25)



{Excerpt}

Time Period: May 11, 2025 - May 17, 2025

-- H5 Detection18 sites (4.5%)

-- No Detection381 sites (95.5%)

-- No samples in last week59 sites




(...)

Source: US Centers for Disease Control and Prevention, https://www.cdc.gov/bird-flu/h5-monitoring/index.html

____

#Evolution, spread and #impact of highly pathogenic #H5 avian #influenza A viruses

Abstract

Since their first detection in 1996, highly pathogenic avian influenza viruses with H5 haemagglutinin of the A/Goose/Guangdong/1/1996 (Gs/Gd) lineage have caused outbreaks in domestic and wild animals associated with mass morbidity and mortality, and economic losses as well as sporadic human infections. These viruses have spread to hosts across the European, Asian, African, and North and South American continents, and most recently Antarctica, representing a major threat to wildlife, domestic animals and humans. Owing to continuous circulation in poultry, Gs/Gd lineage viruses have diversified into numerous distinct genetic and antigenic (sub)clades, and genetic diversity has further increased by extensive reassortment with low pathogenic avian influenza viruses of wild birds. In this Review, we discuss the historical emergence of Gs/Gd lineage viruses and their evolution and geographical spread. An overview of the major determinants of host range and cross-species transmission is provided to summarize phenotypic changes that may signal increased zoonotic or pandemic risks. The recent unusual outbreaks in wild carnivorous mammals and dairy cows is discussed, as well as the changing risk to humans. Countermeasures and mitigation strategies are described from the One Health perspective for future (pre-)pandemic preparedness.

Source: Nature Reviews Microbiology, https://www.nature.com/articles/s41579-025-01189-4

____

Thursday, May 22, 2025

Comparative #pathogenicity of three A(#H5N1) clade 2.3.4.4b HPAI viruses in blue-winged #teal and #transmission to domestic #poultry

ABSTRACT

Long-distance migratory ducks play a critical role in the maintenance and dissemination of A(H5N1) viruses. Comparative pathogenicity studies were conducted on blue-winged teal (BWTE; Anas discors) using three distinct genotypes of A(H5N1) clade 2.3.4.4b viruses (A1, B1.3, and B4.1) isolated from wild ducks in Canada. Twenty-four hours post-intranasal infection of BWTE, contact turkeys and chickens were introduced into each of the groups to evaluate viral transmission. The levels of viral shedding in BWTE increased from 3 to 7 days post-infection (dpi) and continued at lower levels until 14 dpi. The A1 genotype virus (MALL/NS/22) was found to be the least pathogenic to BWTE compared to the reassortant genotypes, B4.1 (RBME/BC/22) and B1.3 (BWTE/MB/22). The B1.3 genotype was the most virulent to BWTE and caused 66.7% mortality compared to 12.5% mortality caused by the B4.1 genotype. The extent of transmission from infected BWTE to contact turkeys and chickens showed variations. Turkeys housed with BWTE infected with either virus died within 6 to 10 days post-contact (dpc). Conversely, the transmission and mortality among contact chickens varied. The highest mortality (3 out of 5) occurred in chickens exposed to BWTE infected with the B1.3 genotype. Whilst in the B4.1 genotype, 2 out of 6 chickens died, none of the chickens in the A1 genotype succumbed to infection. No shedding or seroconversion was noted in all surviving chickens. This research underscores variations in the pathogenic traits and transmissibility among the different genotypes of A(H5N1) clade 2.3.4.4b viruses. This finding is vital for understanding the role of migratory birds in the epidemiology of A(H5N1) and the need for continuous monitoring of these viruses.

Source: mSphere, https://journals.asm.org/doi/10.1128/msphere.00021-25

____

Emergence of #Oropouche Virus in EspĂ­rito Santo State, #Brazil, 2024

Abstract

Oropouche virus (OROV), historically endemic to the Amazon, had spread to nearly all Brazil states by 2024; EspĂ­rito Santo emerged as a transmission hotspot in the Atlantic Forest biome. We characterized the epidemiologic factors driving OROV spread in nonendemic southeast Brazil, analyzing environmental and agricultural conditions contributing to viral transmission. We tested samples from 29,080 suspected arbovirus-infected patients quantitative reverse transcription PCR for OROV and dengue, chikungunya, Zika, and Mayaro viruses. During March‒June 2024, the state had 339 confirmed OROV cases, demonstrating successful local transmission. Spatial analysis revealed that most cases clustered in municipalities with tropical climates and intensive cacao, robusta coffee, coconut, and pepper cultivation. Phylogenetic analysis identified the EspĂ­rito Santo OROV strains as part of the 2022–2024 Amazon lineage. The rapid spread of OROV outside the Amazon highlights its adaptive potential and public health threat, emphasizing the need for enhanced surveillance and targeted control measures.

Source: US Centers for Disease Control and Prevention, https://wwwnc.cdc.gov/eid/article/31/6/24-1946_article

____

Effect of #JYNNEOS #vaccination on #mpox clinical #progression: a case–control study

Summary

Background

The JYNNEOS modified vaccinia virus Ankara vaccine is effective in preventing clade IIb mpox disease. However, vaccine effects on mpox severity are poorly understood. We aimed to assess associations between reported clinical characteristics and vaccination status among individuals with laboratory-confirmed mpox.

Methods

We conducted a case–control study using data collected from public health surveillance interviews of people with mpox in California. Eligible participants for primary analyses were men who were cisgender and participated in telephone interviews with complete responses recorded about anatomical sites where they had lesions. We estimated JYNNEOS vaccine effectiveness against progression to disease involving disseminated lesions via the adjusted odds ratio of vaccination, comparing participants who reported lesions disseminated across multiple anatomical regions (cases) with participants who reported lesions contained to a single anatomical region (controls). We used the same case–control framework to estimate vaccine effectiveness against progression to hospitalisation and prodromal symptoms.

Findings

Men who were cisgender represented 5763 (94·3%) of 6112 people reported to have laboratory-confrimed mpox in California from May 12, 2022, to Dec 31, 2023, among whom, 4609 (79·9%) met eligibility criteria and were included in primary analyses. Of 4609 participants, 1566 (34·0%) were classified as controls and 3043 (66·0%) were classified as cases. Among 3043 cases, 114 (3·7%) received pre-exposure vaccination and 214 (7·0%) received post-exposure vaccination only. Among 1566 controls, 285 (18·2%) received pre-exposure vaccination and 146 (9·3%) received post-exposure vaccination only. For pre-exposure vaccination, vaccine effectiveness against progression was 58·8% (95% CI 50·3–65·9); for post-exposure vaccination, vaccine effectiveness against progression was 15·9% (3·3–26·8). Pre-exposure vaccine effectiveness against progression was 66·6% (56·8–74·2) among people negative for HIV and 44·8% (27·5–58·0) for those with HIV. Pre-exposure vaccination was also associated with protection against progression to severe illness necessitating hospitalisation (85·4% [95% CI 54·3–95·3]), and with reduced odds for fever, chills, and lymphadenopathy.

Interpretation

Among men who were cisgender with mpox, pre-exposure vaccination with JYNNEOS was associated with less severe illness. Awareness of an attenuated disease phenotype involving localised lesions without accompanying prodromal symptoms is needed to ensure accurate diagnosis of mpox in previously vaccinated individuals.

Source: Lancet Infectious Diseases, https://www.thelancet.com/journals/laninf/article/PIIS1473-3099(25)00180-X/fulltext?rss=yes

____

My New Space

Most Popular Posts