Saturday, November 29, 2025

Dominant #substitutions underlying the #antigenic #evolution of #H5 #influenza virus

 


Abstract

Highly pathogenic avian influenza (HPAI) H5 viruses have recently been documented in mammals including humans, posing a major threat to global public health. To prevent a potential H5 pandemic, it is critical to elucidate the antigenic evolutionary pattern and identify key drivers underlying its evolution. In this work, we construct a comprehensive antigenic map of H5 influenza viruses spanning their evolutionary history and classified three antigenic clusters with no cross-neutralization. The first corresponds to ancestral clades, the second to 2.3.4.4* clades being predominant since 2010, and the third to 2.3.4.4 h clade. Despite the gradually increasing genetic distances from ancestral to 2.3.4.4* to 2.3.4.4 h, their antigenic evolution does not follow the same progressive pattern: the antigenic distance between 2.3.4.4 h and ancestral is smaller than that between 2.3.4.4* and ancestral. This divergence is associated with two distinct mutation patterns at six key amino acid positions: (1) persistent mutations at positions 88 (N > R > S), 199 (D > N > S), and 205 (K > N > D), and (2) reversible mutations at positions 131 (Q > L > Q), 139 (S > P > S), and 289 (N > H > N). These findings not only reveal the antigenic evolution mechanism of H5 influenza, but also provide important guidance for vaccine strain selection and broad-spectrum vaccine development.

Source: 


Link: https://www.nature.com/articles/s41467-025-65730-y

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Detection and isolation of #H5N1 clade 2.3.4.4b high pathogenicity avian #influenza virus from #ticks (Ornithodoros maritimus) recovered from a naturally infected slender-billed #gull (Chroicocephalus genei)

 


Abstract

Laridae birds, such as gulls, are known reservoirs of H13 and H16 low pathogenic avian influenza subtypes. However, during the recent outbreaks linked to the reemergence of high pathogenicity avian influenza virus (HPAIV) H5N1 clade 2.3.4.4b of the Goose/Guangdong lineage, European populations of those birds suffered significant losses. HPAI cases were registered not only along the coastlines but also inland areas, particularly in France and Central Europe. During a diagnostic investigation of a group of Laridae birds, part of a HPAIV outbreak registered in the South of France in 2023, larval stages of Ornithodoros maritimus, a nidicolous soft tick parasitizing seabirds, were recovered from a slender-billed gull (Chroicocephalus genei). Affected birds exhibited gross and histopathological lesions consistent with systemic HPAI infection. Immunohistochemistry revealed marked neurotropism, oculotropism and multicentric epitheliotropism. Viral isolation and sequencing analysis confirmed the presence of HPAI H5N1 clade 2.3.4.4b in both the gull and ectoparasites, showing from 98.505% to 99.989% nucleotide identity across six out of eight RNA segments. While additional research is needed to properly assess the vector competence of O. maritimus, ticks may represent an interesting non-invasive surveillance tool for HPAIV surveillance. This is the first time a HPAIV is successfully isolated from ticks larvae. These findings represent a first step toward understanding the potential role played by ticks in the diffusion of avian influenza viruses within marine bird colonies and among other ecosystems, considering the occurrence of specific behavioral traits, such as kleptoparasitim and the position of gulls at the interface between wild and domestic species.


Competing Interest Statement

The authors have declared no competing interest.


Funder Information Declared

Agence Nationale de la Recherche, https://ror.org/00rbzpz17

INRAe Animal Health Department

Source: 



Link, https://www.biorxiv.org/content/10.1101/2025.11.28.689408v1

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History of Mass Transportation: The Brissonneau et Lotz Diesel Locomotive D-7122 (1962)

 


By CARLOS TEIXIDOR CADENAS - Own work, CC BY-SA 4.0, https://commons.wikimedia.org/w/index.php?curid=54482587

At the Llolleo train station, very close to the port of San Antonio in the Valparaíso Region, we see the Train of Memories, pulled by two diesel locomotives (D-7122 and D-16012). The first, D-7122, is French, from Brissonneau et Lotz, built in 1962. LLO-LLEO = Llolleo. San Antonio Conurbation.

Source: 


Link: https://commons.wikimedia.org/wiki/Category:Brissonneau_et_Lotz_locomotives

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Friday, November 28, 2025

Unprecedented high level of highly pathogenic avian #influenza in wild #birds in #Europe during the 2025 autumn #migration

 


Abstract

Between 6 September and 14 November 2025, 1,443 highly pathogenic avian influenza (HPAI) A(H5) virus detections were reported in wild birds across 26 countries in Europe. This number was four times higher than in the same period in 2024 and the highest overall for those weeks since at least 2016. Almost all the detections (99%) were due to HPAI A(H5N1) viruses, and most of them belonged to EA-2024-DI.2.1, a new sub-lineage of the EA-2024-DI.2 genotype. These HPAI virus detections in wild birds involved increasing numbers of waterfowl species (ducks, geese and swans) that were found positive in large parts of Europe. In addition, high numbers of common cranes were affected across a wide band stretching from northeast to southwest Europe. Given the unprecedented high circulation of HPAI virus in the wild bird population compared to previous years, and the associated high environmental contamination, strict biosecurity measures and early detection of infected poultry establishments are urgently needed to prevent introductions from wild to domestic birds and further spread among poultry establishments. Prompt removal of wild bird carcasses is indicated to reduce the risk of infection for other wild and domestic birds and mammals.

Source: 


Link: https://efsa.onlinelibrary.wiley.com/doi/abs/10.2903/j.efsa.2025.9811

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The #epidemiology of #chikungunya virus in #Brazil and the potential #impact of #vaccines: a mathematical modelling study

 


Summary

Background

The first chikungunya virus (CHIKV) vaccine is now licensed in Brazil, the country that reports the most cases of CHIKV globally; however, the optimal use of the vaccine remains unclear owing to a poor understanding of CHIKV epidemiology and population immunity. We aimed to combine the distribution of cases and deaths reported since 2014 with seroprevalence studies to inform mathematical models that estimate the underlying rates of infection by state and year, and the underlying patterns of disease and death by age and sex.

Methods

We quantified the annual CHIKV infection and disease burden between 2014 and 2024 in each of the 27 federative units of Brazil using a mathematical model in a Bayesian framework that integrated serological surveys (n=12) and confirmed CHIKV disease cases (n=488 234) and CHIKV deaths (n=1719) reported between January, 2014, and September, 2024. Using this base, we estimated the potential impact of a vaccine over the period 2025–29 had the population been vaccinated before the 2025 season, evaluating different roll-out strategies.

Findings

We found that 18·3% (95% credible interval 16·5–20·3) of the Brazilian population has been infected since 2014, with the highest risk concentrated in the northeast and southeast. Overall, 1·13% (1·07–1·19) of infections were detected by surveillance systems, with an increasing probability of symptoms with age and greater risk of symptoms in females. Vaccinating 40% of the population older than 12 years (73 million doses), and assuming a vaccine efficacy of 70% against infection and 95% against disease, would avert up to 1·6 million (0·5–3) cases and 198 (61–359) deaths over the next 5 years.

Interpretation

Despite widespread circulation, most of Brazil remains susceptible to infection. CHIKV vaccination has the potential to substantially reduce disease burden.

Funding

CEPI.

Source: 


Link: https://www.thelancet.com/journals/laninf/article/PIIS1473-3099(25)00605-X/fulltext?rss=yes

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Thursday, November 27, 2025

#Avian-origin #influenza A viruses tolerate elevated pyrexic #temperatures in #mammals

 


Editor’s summary

Birds operate at body temperatures several degrees higher than those of mammals, and, like mammals, birds are infected by influenza viruses. Influenza viruses can move between animal hosts, often reassorting their gene segments as they transition. Knowing that the body temperature of humans often elevates when sick, Turnbull et al. investigated whether virus gene segments originating from hot-blooded birds may give the virus an advantage in feverish mammals. They found that a viral polymerase containing an avian origin PB1 subunit indeed allowed the virus to replicate at higher temperatures in vitro and in a hyperthermic mouse model. —Caroline Ash


Structured Abstract

INTRODUCTION

Influenza A viruses circulate in diverse species of birds and periodically spill over to cause severe or fatal infections in humans. Avian influenza A viruses are adapted to replicate in the gastrointestinal tract of birds at ~40° to 42°C. By contrast, human-adapted seasonal influenza A viruses tend to cause mild symptoms and thrive in the cool upper respiratory tract at ~33°C but struggle to replicate in cells cultured at 40°C. Notably, the normal body temperature of avian hosts exceeds that of a typical human fever.

Elevating core body temperature in response to infection is an evolutionarily ancient antipathogen strategy, which in humans (and other endotherms) is the hallmark of a febrile response. However, whether elevated temperature itself is directly antiviral or acts indirectly, such as through thermally stimulated immune processes, can be difficult to untangle because pyrogens and antipyretics have pro- and anti-inflammatory properties as well as affecting body temperature.

RATIONALE

We sought to harness the strain-specific temperature sensitivity of influenza viruses to assess the antiviral potential of febrile temperature in vivo. We hypothesized that elevated temperature can inhibit the replication of human-origin influenza A viruses, whereas avian viruses, adapted to higher temperatures in birds, may be able to resist this defense.

RESULTS

To avoid false comparison, we wanted to engineer viruses that were identical apart from their ability to replicate at different temperatures. Taking advantage of the segmented viral genome, we found that avian-origin PB1 proteins (a component of the viral polymerase) enabled viral replication at higher temperatures. Notably, the 1918, 1957, and 1968 pandemic influenza viruses all acquired an avian-origin PB1 that enabled temperature-resistant replication, and they were associated with more-severe disease compared with their seasonal descendants.

We used a human-origin laboratory-adapted virus (PR8) that is avirulent in humans for our in vivo experiments. PR8 causes severe disease in mice but, like seasonal influenza A viruses, it replicates poorly at 40°C. We made a series of chimeric PB1 proteins and mapped two amino acid substitutions that conferred avian-like temperature resistance to PR8. This allowed us to generate two similar viruses for comparative experiments: one that replicated poorly at 40°C and one “avianized” mutant that replicated effectively at this temperature.

In mice housed under standard conditions, the parental virus and the avianized mutant both caused severe disease. However, when we simulated a fever in mice by elevating the ambient temperature to increase core body temperature, the mice were protected against the parental virus and experienced relatively mild symptoms. By contrast, the avianized temperature-resistant virus caused severe disease in mice, despite their higher body temperature.

CONCLUSION

Because the avianized mutant that replicates effectively at 40°C in vitro was the only virus that caused severe disease in the presence of a simulated fever, we conclude that elevated temperature itself can be a potent antiviral defense in vivo. The ~2°C increase in body temperature, which is similar to an everyday febrile response, transformed a normally severe or lethal challenge into mild disease. And because the avian-like virus resisted the elevated temperature defense, fever-resistant replication could help explain why avian spillover viruses and pandemic influenza viruses with an avian-origin PB1 cause more-severe disease in humans.


Abstract

Host body temperature can define a virus’s replicative profile—influenza A viruses (IAVs) adapted to 40° to 42°C in birds are less temperature sensitive in vitro compared with human isolates adapted to 33° to 37°C. In this work, we show that avian-origin PB1 polymerase subunits enable IAV replication at elevated temperatures, including avian-origin PB1s from the 1918, 1957, and 1968 pandemic viruses. Using a model system to ensure biosafety, we show that a small increase in body temperature protects against severe disease in mice and that this protection is overcome by a febrile temperature–resistant PB1. These findings indicate that although elevated temperature itself can be a potent antiviral defense, it may not be effective against all influenza strains. These data inform both the clinical use of antipyretics and IAV surveillance efforts.

Source: 


Link: https://www.science.org/doi/10.1126/science.adq4691

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#Ethiopia, #Prevention and #Control Activities for the #Marburg Virus Disease Have Been Strengthened and Are Ongoing (MoH, Nov. 26 '25): 73 confirmed/probable/suspected cases so far

 


The Ministry of Health and the Ethiopian Public Health Institute (EPHI) have released a press statement containing updated information regarding the Marburg virus disease.

They stated that laboratory tests have confirmed the occurrence of Marburg virus disease in the Southern Ethiopia Region

Up to now, 73 suspected individuals have been tested; among them, 6 patients have died due to the virus, as confirmed by the EPHI reference laboratory. Five additional patients are currently receiving treatment.

It was also noted that 349 people who had contact with the confirmed cases are under follow-up, and 119 of them have already completed their isolation period.

Dr. Mekdes Daba, Minister of Health, expressed condolences for those who lost their lives due to the virus and extended sympathy to their families, relatives, and friends.

She further explained that isolation centers have been established in affected areas, trained personnel are deployed, and essential medical supplies are being organized to provide strengthened medical care to patients. 

Additionally, Ethiopia is working with countries that previously experienced Marburg outbreaks to exchange expertise, learn from their experience, and access treatments and vaccines that have yielded positive results, ensuring they become available in the country for patients.

Dr. Mesay Hailu, Director of the Ethiopian Public Health Institute, confirmed that isolation centers, medical services, and trained staff are prepared should new cases appear. 

He added that even in regions where no cases have been detected, preparedness activities are underway. 

Screening procedures have also been strengthened at airports, border points, and other entry/exit locations.

Anyone who shows symptoms of the disease is urged to report immediately to the nearest health facility or call the toll-free numbers 8335 or 952. These hotlines also provide additional information and counseling services about the disease.

Source: 


Link: https://www.moh.gov.et/marburg-response

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Characterization of #H5N1 high pathogenicity avian #influenza virus belonging to clade 2.3.4.4b isolated from Ezo red #fox in #Japan in a mouse model

 


ABSTRACT

H5N1 high pathogenicity avian influenza virus (HPAIV) has spread in wild birds and poultry worldwide. H5N1 HPAIV belonging to the currently predominant clade 2.3.4.4b has infected not only birds but also mammals (wild and domestic animals), with several human infections also being reported, raising concerns for public health. In 2022, a clade 2.3.4.4b H5N1 HPAIV strain, A/Ezo red fox/Hokkaido/1/2022 (H5N1; Fox/Hok/1/22), was isolated from an Ezo red fox (Vulpes vulpes schrencki) in Hokkaido, Japan; this was the first reported case of clade 2.3.4.4b H5N1 HPAIV isolation from a mammalian species in Japan. Several amino acid substitutions in the PB2 protein play an important role in the adaptation of avian influenza viruses to mammals, but Fox/Hok/1/22 PB2 does not have any of these well-known mammalian-adapting PB2 substitutions. Here, we investigated the biological properties of Fox/Hok/1/22 in a mouse model and found that this virus was highly virulent in mice and replicated well in multiple organs, including the lungs and brain. We then examined whether viruses isolated from these organs acquired known mammalian-adapting PB2 amino acid substitutions, such as PB2 E627K. Deep sequencing analysis of viral RNA from mouse brain and lungs revealed that virus with PB2-627E was predominant in three of four mice, whereas the PB2-627K substitution was predominant in one mouse. These results indicate that Fox/Hok/1/22 is highly virulent in mice despite lacking known PB2 substitutions involved in mammalian adaptation.


IMPORTANCE

The H5N1 avian influenza virus has caused severe disease in birds worldwide and is now spreading to mammals, including humans. In 2022, this virus was detected for the first time in an Ezo red fox in Japan. To understand its potential impact on mammals, we studied this virus in mice and found that it caused severe illness, spreading to multiple organs, including the lungs and brain. Surprisingly, despite lacking genetic mutations typically associated with mammalian adaptation, the virus was highly virulent in mice. This finding suggests that the H5N1 virus may pose a greater threat to mammals, including humans, than previously thought. Given their continued spread among wild and domestic animals, our findings underscore the urgent need to monitor how recent H5N1 viruses behave in mammals.

Source: 


Link: https://journals.asm.org/doi/10.1128/spectrum.01097-25

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Wednesday, November 26, 2025

Assessing #Ebola virus circulation in the Tshuapa province (#DRC): A #OneHealth #investigation of wildlife and #human interactions

 


Abstract

The wildlife reservoir and spillover mechanisms of Ebola virus remain elusive despite extensive research efforts in endemic areas. This study employed a One Health approach to examine the virus’ circulation in wildlife and the associated human exposure risks in the Tshuapa province of the Democratic Republic of the Congo. We screened 1049 samples from 919 animals, predominantly small mammals, collected in 2021, and 380 samples from inhabitants of Inkanamongo village, the site of an Ebola virus disease outbreak in 2014. These samples were screened for evidence of current (RNA) or past (IgG antibodies) Ebola virus infections. We also conducted interviews with 167 individuals in the surrounding districts to assess their interactions with wildlife. While no Ebola virus RNA was detected in the wildlife samples, anti-orthoebolavirus IgG antibodies were found in 13 bats and 38 rodents. Among the human participants, 120 individuals had IgG antibodies against at least 1 orthoebolavirus antigen, with 12 showing seropositivity for 2 antigens of the same orthoebolavirus, despite not having a prior Ebola disease diagnosis. Furthermore, the majority of respondents reported frequent visits to the forest to hunt a variety of wild animals, particularly ungulates and rodents, which could account for occasional viral spillovers. The absence of active Ebola virus circulation in wildlife may reflect seasonal patterns in reservoir ecology, as those observed in bats. Similarly, seasonal human activities, such as hunting and foraging, may result in periodic exposure risks. These findings highlight the importance of continuous, multidisciplinary surveillance to monitor changes in seasonal spillover risks.


Author summary

Since its discovery in 1976 in the Democratic Republic of Congo (DRC), Ebola virus (EBOV) has caused more than 20 outbreaks in humans, with fatality rates as high as 90%. While the virus is believed to have an animal origin, naturalist reservoir and the mechanisms of transmission to humans remain poorly understood. Gaining insight into which species may harbour the virus and how transmission occurs is essential to predict and prevent future outbreaks. In this study, we investigate EBOV exposure in wildlife and humans in a region of the DRC with a documented history of outbreaks. Although we did not detect active infection in animals, we found serological evidence of prior exposure in several bat and rodent species, as well as among local residents. Interviews with community members revealed frequent contact with wildlife through hunting and handling, practices that could elevate the risk of animal-to-human transmission. These findings offer new clues about possible EBOV reservoirs and highlight the role of human behaviours in facilitating facilitate spillover events. Our results underscore the need for continued, integrated surveillance to improve understanding of Ebola virus ecology and to help reduce the risk of future Ebola outbreaks in endemic regions.

Source: 


Link: https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1013628

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#Bacterial #Colonization and Life-Threatening #RSV #Infection in #children

 


Highlights

• Respiratory tract bacterial colonization was highly prevalent among RSV-infected children.

• Moraxella catarrhalis colonization was significantly associated with mild RSV disease.

• Haemophilus influenzae carriage showed a trend toward increased severity.

• Household crowding independently correlated with severe RSV outcomes.

• Airway microbiota may modulate RSV clinical outcomes.


Abstract

Background

Respiratory syncytial virus is a major cause of acute respiratory infection in children. While most cases are mild, some progress to life-threatening disease. The role of bacterial colonization in shaping respiratory syncytial virus outcomes remains incompletely understood.

Objective

To evaluate the association between respiratory tract bacterial colonization and respiratory syncytial virus disease severity in children.

Study design

Prospective cohort study conducted during 2019 and 2023. Children ≤24 months hospitalized with confirmed positive respiratory syncytial virus infection were enrolled. Clinical and epidemiological data were collected. respiratory syncytial virus subtypes, viral load, and detection of Haemophilus influenzae, Streptococcus pneumoniae, and Moraxella catarrhalis were determined by qPCR.

Results

401 patients were hospitalized with acute respiratory infection, of which 172 (42.9%) had confirmed respiratory syncytial virus infection. Among them, 15 (8.7%) developed life-threatening disease. Bacterial colonization was highly prevalent (92.4%): H. influenzae (68%), S. pneumoniae (64.5%), and M. catarrhalis (52.9%). M. catarrhalis colonization was associated with mild disease (p=0.003), while H. influenzae showed a trend toward increased severity (p=0.054). Viral subtype and viral load were not linked to severity. Household crowding was independently associated with more severe disease (p=0.031).

Conclusions

Our results support the growing evidence that airway microbiota modulates respiratory syncytial virus outcomes and highlights M. catarrhalis as potential microbial determinant of disease progression.

Source: 


Link: https://www.sciencedirect.com/science/article/abs/pii/S1386653225001337?dgcid=rss_sd_all

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#Transmission, Pathological and Clinical Manifestations of Highly Pathogenic Avian #Influenza A Virus in #Mammals with Emphasis on #H5N1 Clade 2.3.4.4b

 


Abstract

Highly pathogenic avian influenza A virus (HPAIV) H5N1, clade 2.3.4.4b, has emerged as a significant zoonotic threat. H5N1 is widely circulating in wild birds, and an increasing number of spillover events have been observed in a wide range of mammalian species. These cases are primarily reported in countries on the European and American continents. This review describes the likely transmission routes, lesions, and clinical manifestations of HPAIV H5N1 clade 2.3.4.4b in naturally infected mammals, with a focus on the involvement of the central nervous system (CNS). In the analysis, pathological findings were categorized by organ system and host species, which were further divided into terrestrial mammals, marine mammals, and dairy cattle. The most frequently reported clinical manifestations were neurological and respiratory signs in marine mammals and neurological signs and lethargy in terrestrial mammals. Macroscopic and histological lesions were commonly found in the CNS and lungs of terrestrial and marine mammals, while dairy cattle showed mainly gastrointestinal and mammary gland involvement. Immunohistochemistry and reverse transcriptase real-time PCR analyses confirmed high viral loads in brain tissues, indicating a neurological tropism of H5N1 clade 2.3.4.4b. Routes of CNS invasion remain uncertain, though both hematogenous and olfactory nerve pathways are discussed. Recent evidence suggests mammal-to-mammal and vertical transmission, raising concerns for the zoonotic and pandemic potential of this virus. In conclusion, the findings emphasize an urgent need for enhanced surveillance to effectively disclose changes in viral pathogenicity and transmissibility among mammalian hosts.

Source: 


Link: https://www.mdpi.com/1999-4915/17/12/1548

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Serological #Evidence of Highly Pathogenic Avian #Influenza #H5N1 in Invasive Wild #Pigs in Western #Canada

 


Abstract

Influenza A virus (IAV) can infect a wide range of hosts, including wild and domestic pigs. Swine play an important role in influenza evolution and epidemiology due to their ability to get infected with both avian and human influenza viruses, potentially leading to reassorted virus variants. Interactions at the wild-domestic swine interface have been documented on multiple occasions, raising concern about pathogen transmission and the emergence of novel influenza strains. This study investigates the occurrence and subtypes of IAV infecting invasive wild pigs in Alberta, Canada. A total of 267 wild pigs were captured between 2021–2024. Exposure to IAV was initially detected by cELISA, with further confirmation of exposure to the H5Nx virus by hemagglutination inhibition (HI) and virus neutralization (VN) assays. Although no IAV genetic material was detected by qPCR, the seropositive samples by cELISA (4.17%; 5/120) coincided with the 2022–2024 highly pathogenic avian influenza virus (HPAI) H5N1 epizootic in Alberta, which involved outbreaks in wild species and domestic birds. These findings, combined with the epidemiological context, suggest interspecies transmission of HPAI H5N1 clade 2.3.4.4b to wild pigs. These results highlight the potential role of wild pigs as a new host in Canada and emphasize the need for continued surveillance of IAV in wild pig populations to assess the risk of spillover events at the wildlife, livestock, and human interfaces.

Source: 


Link: https://onlinelibrary.wiley.com/doi/10.1155/tbed/2720469

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#Korea (Rep. of) - #Influenza A #H5N1 viruses of high pathogenicity (Inf. with) (non-poultry including wild birds) (2017-) - Immediate notification



Unspecified wild species sample from Jeollabuk-do Region.

Source: 


Link: https://wahis.woah.org/#/in-review/6967

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Reconstructing the early spatial #spread of #pandemic respiratory #viruses in the #USA

 


Abstract

Understanding the geographic spread of emerging respiratory viruses is critical for pandemic preparedness, yet the early spatiotemporal dynamics of the 2009 H1N1 pandemic influenza and SARS-CoV-2 in the United States (US) remain unclear. While mobility and genomic data have revealed important aspects of pandemic spatial spread, several key questions remain: Did the two pandemics follow similar spatial transmission routes? How rapidly did they spread across the US? What role did stochastic processes play in early spatial transmission? To address these questions, we integrated high-resolution disease data with a robust, data-efficient inference framework combining air travel, commuting flows, and pathogen superspreading potentials to reconstruct their spatial spread across US metropolitan areas. The two pandemics exhibited distinct transmission pathways across locations; however, both pandemics established local circulation in most metropolitan areas within weeks, driven by several shared transmission hubs. Early spatial spread was more strongly associated with air travel than with commuting, though stochastic dynamics introduced substantial uncertainty in transmission routes, creating challenges for timely detection and control. Simulations indicate that broad wastewater surveillance coverage beyond top transmission hubs coupled with effective infection control may slow initial spatial expansion. Our findings highlight the rapid, stochastic spread of pandemic respiratory pathogens and the difficulties of early outbreak containment.


Competing Interest Statement

JS and Columbia University disclose partial ownership of SK Analytics. Other authors declare no competing interest.


Funding Statement

This study was supported by funding from National Natural Science Foundation of China 12371516 (RZ), National Science Foundation DMS-2229605 (SP), Centers for Disease Control and Prevention U01CK000592 (JS, SP) and 75D30122C14289 (JS), National Institute of Allergy and Infectious Diseases R01AI163023 (JS), Princeton Catalysis Initiative (BTG), Princeton Precision Health (BTG), and High Meadows Environmental Institute (BTG). The findings and conclusions in this report are those of the authors and do not necessarily represent the official position of the US National Institutes of Health, Centers for Disease Control and Prevention, or Department of Health and Human Services.

Source: 


Link: https://www.medrxiv.org/content/10.1101/2025.11.24.25340792v1

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Tuesday, November 25, 2025

Emergence of a novel #reassorted high pathogenicity avian #influenza #H5N2 virus associated with severe #pneumonia in a young #adult

 


Abstract

Background 

Infection of backyard and poultry with low pathogenicity avian influenza LPAI A(H5N2) viruses has occurred in Mexico since 1994, and the first human infection caused by this influenza virus was detected in 2024. Since its emergence in the Americas, frequent reassortments between high pathogenicity avian influenza HPAI A(H5N1) and LPAI viruses has occurred. In September 2025, the Instituto Nacional de Enfermedades Respiratorias of Mexico City identified an unsubtypeable influenza A virus infection in a young adult patient later determined to be a reassortant HPAI (H5N2) virus with a clade 2.3.4.4b HA

Methods 

We analyzed clinical and epidemiologic data from this patient. Respiratory samples were tested for influenza RT-qPCR assays. Genomic sequence and phylogenetics analyses were performed to provisionally assign a new genotype to the novel HPAI A(H5N2) reassortant virus. 

Results 

The patient presented with fever and tachypnea, later developed hemoptysis and thoracic pain, with oxygen saturation decreasing to 70%. CT scan showed bilateral ground-glass opacities consistent with diffuse alveolar hemorrhage and zones consistent with consolidation. Clinical improvement was observed and the patient was discharged. Through viral complete genome analysis, we identified an HPAI A(H5N2) virus with genes from both clade 2.3.4.4b A(H5N1) viruses similar to those detected in North America during 2022-2023 and genes from the LPAI A(H5N2) viruses detected in Mexico during 2024. 

Conclusions 

This is the first ever laboratory-confirmed human infection caused by an HPAI A(H5N2) virus infection, suggesting a new genotype provisionally classified as B3.14. The relationship of the virus with the severity of illness remains unknown.


Competing Interest Statement

Conflicts of Interest: The authors declare that they have no competing interests. The sponsors had no role in the design, execution, interpretation, or writing of the study. The findings and conclusions in this report are those of the authors and do not necessarily represent the views of the Centers for Disease Control and Prevention or the Agency for Toxic Substances and Disease Registry.


Funding Statement

Funding: This work was financially supported by Secretaria de Ciencia, Humanidades, Tecnologia e Innovacion (SECIHTI), Grant CBF-2025-I-3693 to J.A.V.-P.

Source: 


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#Antibody responses to #SARS-CoV-2 #variants #LP.8.1, LF.7.1, NB.1.8.1, #XFG, and BA.3.2 following KP.2 monovalent #mRNA #vaccination

 


ABSTRACT

The evolution of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has resulted in antigenically distinct variants that challenge vaccine-induced immunity. The KP.2 monovalent mRNA vaccine was deployed in 2024 to address immune escape by emerging SARS-CoV-2 subvariants. We assessed neutralizing antibody responses in 56 adults with varied exposure histories following KP.2 vaccination against emerging variants including LP.8.1, LF.7.1, NB.1.8.1, XFG, and BA.3.2. While KP.2 vaccination enhanced neutralization against homologous variants, substantial reductions in neutralizing activity were observed against emerging Omicron variants across all exposure groups. Exposure history showed some influence on neutralization breadth, with self-reported vaccination-only participants exhibiting better cross-neutralization compared to individuals with hybrid immunity. Antigenic cartography revealed substantial antigenic distances between KP.2 and emerging variants, highlighting significant immune escape potential that threatens vaccine protection.


IMPORTANCE

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) continues to evolve, producing variants that escape vaccine-induced immunity. The current work shows that KP.2 monovalent vaccination provides limited protection against antigenically distant Omicron variants (LP.8.1, LF.7.1, NB.1.8.1, XFG and BA.3.2). These findings highlight the ongoing challenge of maintaining vaccine effectiveness against evolving SARS-CoV-2 variants and argue for continuous updating of vaccines.

Source: 


Link: https://journals.asm.org/doi/full/10.1128/mbio.02901-25?af=R

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Structural #insights into #MERS and #SARS #coronavirus #membrane proteins

 


Abstract

The membrane (M) protein of coronaviruses is essential for maintaining structural integrity during membrane virion budding and viral pathogenesis. Given its high conservation in lineages within the betacoronavirus genus, such as sarbecoviruses, the M protein presents as an attractive therapeutic target; however, developing broad-spectrum antivirals targeting coronaviruses such as MERS-CoV is challenging due to lower sequence conservation and limited structural information available beyond that of the SARS-CoV-2 M protein. In this study, we report 3-3.2 Å resolution structures of MERS-CoV M protein, engineered with a SARS-CoV-2-like antibody interface, representing the first human merbecovirus M protein structure, and SARS-CoV M protein structures, with and without a previously identified SARS-CoV-2 M protein inhibitor, JNJ-9676. We highlight the structural differences between the MERS-CoV, SARS-CoV and SARS-CoV-2 M proteins, and present insights into the conservation of the JNJ-9676 binding pocket as well as key differences that could be targeted to accelerate the design of specific MERS-CoV and broad-spectrum antivirals targeting coronavirus M proteins.

Source: 


Link: https://www.nature.com/articles/s42003-025-09042-3

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#USA, #Influenza A #H5: #Situation #summary of confirmed and probable #human cases since 2024 (as of Nov. 25 '25)

 


{Summary}

Confirmed Cases at National Level

[National - Total Cases: 71 {+1}{§}]

[Cases Exposure Source]

-- 41 - Dairy Herds (Cattle){*}

-- 24 - Poultry Farms and Culling Operations{*}

-- 3 - Other Animal Exposure{†}

-- 3 - Exposure Source Unknown{‡}


Probable Cases at National Level

[National - Total Cases: 7 {no change}]

[Cases - Exposure Source]

-- 1 - Dairy Herds (Cattle){*}

-- 5 - Poultry Farms and Culling Operations{*}

-- 0 - Other Animal Exposure{†}

-- 1 - Exposure Source Unknown{‡}


NOTE: One additional case was previously detected in a poultry worker in Colorado in 2022. Louisiana reported the first H5 bird flu death in the U.S.

{*} Exposure Associated with Commercial Agriculture and Related Operations

{†} Exposure was related to other animals such as backyard flocks, wild birds, or other mammals

{‡} Exposure source was not able to be identified

(...)

{§} A case from Washington State, see more at: https://doh.wa.gov/newsroom/grays-harbor-county-resident-dies-complications-avian-influenza

Source: 


Link: https://www.cdc.gov/bird-flu/situation-summary/?CDC_AAref_Val=https%3A%2F%2Fwww.cdc.gov%2Fflu%2Favianflu%2Favian-flu-summary.htm&cove-tab=1

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