Tuesday, December 16, 2025

Chinese #Taipei - #Influenza A #H5N1 viruses of high pathogenicity (Inf. with) (non-poultry including wild birds) (2017-) - Immediate notification

Samples from Qieding District, Kaohsiung City and Annan District, Tainan City were sent to the National Laboratory, Veterinary Research Institute (VRI), for diagnosis. Highly pathogenic avian influenza H5N1 subtype were confirmed by VRI. The sampling spots were disinfected. Surrounding poultry farms within 3 km radius of the sampling spot are under intensified surveillance for 28 days.


By Cp9asngf - Own work, CC BY-SA 3.0, https://commons.wikimedia.org/w/index.php?curid=27358997

A dead black-faced spoonbill (Platalea minor) was found in Sicao, Annan District, Tainan City. The specimen was sent to National Reference Laboratory for testing. It was confirmed as Highly Pathogenic Avian Influenza (HPAI) on December 7.

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By Photo by Laitche, CC BY-SA 4.0, https://commons.wikimedia.org/w/index.php?curid=46904763

A dead Eurasian Wigeon (Anas penelope) was found in Qieding District, Kaohsiung City. The specimen was sent to National Reference Laboratory for testing. It was confirmed as Highly Pathogenic Avian Influenza (HPAI) on December 3.

Source: 


Link: https://wahis.woah.org/#/in-review/7098

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#Global burden of lower respiratory #infections and aetiologies, 1990–2023: a systematic analysis for the Global Burden of Disease Study 2023

 


Summary

Background

Lower respiratory infections (LRIs) remain the world's leading infectious cause of death. This analysis from the Global Burden of Diseases, Injuries, and Risk Factors Study (GBD) 2023 provides global, regional, and national estimates of LRI incidence, mortality, and disability-adjusted life-years (DALYs), with attribution to 26 pathogens, including 11 newly modelled pathogens, across 204 countries and territories from 1990 to 2023. With new data and revised modelling techniques, these estimates serve as an update and expansion to GBD 2021. Through these estimates, we also aimed to assess progress towards the 2025 Global Action Plan for the Prevention and Control of Pneumonia and Diarrhoea (GAPPD) target for pneumonia mortality in children younger than 5 years.

Methods

Mortality from LRIs, defined as physician-diagnosed pneumonia or bronchiolitis, was estimated using the Cause of Death Ensemble model with data from vital registration, verbal autopsy, surveillance, and minimally invasive tissue sampling. The Bayesian meta-regression tool DisMod-MR 2.1 was used to model overall morbidity due to LRIs. DALYs were calculated as the sum of years of life lost (YLLs) and years lived with disability (YLDs) for all locations, years, age groups, and sexes. We modelled pathogen-specific case-fatality ratios (CFRs) for each age group and location using splined binomial regression to create internally consistent estimates of incidence and mortality proportions attributable to viral, fungal, parasitic, and bacterial pathogens. Progress was assessed towards the GAPPD target of less than three deaths from pneumonia per 1000 livebirths, which is roughly equivalent to a mortality rate of less than 60 deaths per 100 000 children younger than 5 years.

Findings

In 2023, LRIs were responsible for 2·50 million (95% uncertainty interval [UI] 2·24–2·81) deaths and 98·7 million (87·7–112) DALYs, with children younger than 5 years and adults aged 70 years and older carrying the highest burden. LRI mortality in children younger than 5 years fell by 33·4% (10·4–47·4) since 2010, with a global mortality rate of 94·8 (75·6–116·4) per 100 000 person-years in 2023. Among adults aged 70 years and older, the burden remained substantial with only marginal declines since 2010. A mortality rate of less than 60 deaths per 100 000 for children younger than 5 years was met by 129 of the 204 modelled countries in 2023. At a super-regional level, sub-Saharan Africa had an aggregate mortality rate in children younger than 5 years (hereafter referred to as under-5 mortality rate) furthest from the GAPPD target. Streptococcus pneumoniae continued to account for the largest number of LRI deaths globally (634 000 [95% UI 565 000–721 000] deaths or 25·3% [24·5–26·1] of all LRI deaths), followed by Staphylococcus aureus (271 000 [243 000–298 000] deaths or 10·9% [10·3–11·3]), and Klebsiella pneumoniae (228 000 [204 000–261 000] deaths or 9·1% [8·8–9·5]). Among pathogens newly modelled in this study, non-tuberculous mycobacteria (responsible for 177 000 [95% UI 155 000–201 000] deaths) and Aspergillus spp (responsible for 67 800 [59 900–75 900] deaths) emerged as important contributors. Altogether, the 11 newly modelled pathogens accounted for approximately 22% of LRI deaths.

Interpretation

This comprehensive analysis underscores both the gains achieved through vaccination and the challenges that remain in controlling the LRI burden globally. Furthermore, it demonstrates persistent disparities in disease burden, with the highest mortality rates concentrated in countries in sub-Saharan Africa. Globally, as well as in these high-burden locations, the under-5 LRI mortality rate remains well above the GAPPD target. Progress towards this target requires equitable access to vaccines and preventive therapies—including newer interventions such as respiratory syncytial virus monoclonal antibodies—and health systems capable of early diagnosis and treatment. Expanding surveillance of emerging pathogens, strengthening adult immunisation programmes, and combating vaccine hesitancy are also crucial. As the global population ages, the dual challenge of sustaining gains in child survival while addressing the rising vulnerability in older adults will shape future pneumonia control strategies.

Funding

Gates Foundation.

Source: 


Link: https://www.thelancet.com/journals/laninf/article/PIIS1473-3099(25)00689-9/abstract?rss=yes

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#Poland - #Influenza A #H5N1 viruses of high pathogenicity (Inf. with) (non-poultry including wild birds) (2017-) - Immediate notification



A wild Greylag Goose in Podlaskie Region.

Source: 


Link: https://wahis.woah.org/#/in-review/7096

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#Namibia - #Influenza A #H5N1 viruses of high pathogenicity (Inf. with) (non-poultry including wild birds) (2017-) - Immediate notification

 


By MPF - Own work, CC BY-SA 4.0, https://commons.wikimedia.org/w/index.php?curid=102468449

Approximately 30 wild birds on an island near Lüderitz were observed exhibiting clinical signs consistent with highly pathogenic avian influenza (HPAI). Enhanced and continuous surveillance activities are ongoing to assess the extent of infection and monitor potential spread.

Source: 


Link: https://wahis.woah.org/#/in-review/7120

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Monday, December 15, 2025

The #potential of #H5N1 viruses to adapt to #bovine cells varies throughout #evolution

 


Abstract

Avian influenza H5N1 clade 2.3.4.4b viruses caused a global panzootic and, unexpectedly, widespread outbreaks in dairy cattle, therefore representing a pandemic threat. To inform control strategies, it is critical to determine whether the potential to adapt to bovine cells is a general feature of H5N1 viruses, is specific to viruses of clade 2.3.4.4b, or narrowly restricted to some genotypes within this clade. Using a large panel of recombinant viruses representing >60 years of H5N1 history and other IAVs for comparison, we demonstrate replicative fitness in bovine cells is: (i) highly variable across 2.3.4.4b genotypes, (ii) limited in viruses predating the global expansion of this clade, (iii) determined by the internal gene cassette, and (iv) not restricted to udder epithelial cells. Mutations in the PB2 polymerase subunit emerge as key determinants of adaptation, although their phenotypic effects are context dependent. Bovine B3.13 and some avian genotypes exhibit enhanced modulation of bovine interferon-induced antiviral responses, determined by at least PB2, nucleoprotein, and the non-structural protein NS1. Our results highlight the polygenic nature of IAV host range, and reveal that the replication fitness in bovine cells, and likely their potential to adapt to cattle, varies greatly during the evolutionary trajectory of H5N1 viruses.

Source: 


Link: https://www.nature.com/articles/s41467-025-67234-1

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#Coronavirus Disease Research #References (by AMEDEO, Dec. 15 '25)

 


    Clin Infect Dis

  1. BIEBELBERG B, Chen T, McKenna C, Kanjilal S, et al
    Associations between antibiotic use and outcomes in patients hospitalized with community-acquired pneumonia and positive respiratory viral assays.
    Clin Infect Dis. 2025 Dec 11:ciaf687. doi: 10.1093.
    PubMed         Abstract available


    Emerg Infect Dis

  2. BRAUNFELD JB, Traub E, Chiou H, Amoon AT, et al
    Community-Driven, Text Message-Based COVID-19 Surveillance System, Los Angeles County, California, USA, 2020-2024.
    Emerg Infect Dis. 2025;31:2109-2117.
    PubMed         Abstract available


    Int J Infect Dis

  3. LI H, LiuPhD J, Fang Q, Li Z, et al
    Pathogen-specific immunity debt in children after prolonged nonpharmaceutical interventions: a cross-sectional study in China.
    Int J Infect Dis. 2025 Dec 3:108278. doi: 10.1016/j.ijid.2025.108278.
    PubMed         Abstract available

  4. JIANG Z, Shan T, Li Y, Han F, et al
    Persistent Attenuation of Lymphocyte Subsets After Mass SARS-CoV-2 Infection.
    Int J Infect Dis. 2025 Dec 5:108287. doi: 10.1016/j.ijid.2025.108287.
    PubMed         Abstract available

  5. AUGELLO M, Bartolomeo FD, Varisco B, Timelli L, et al
    Real-world use of cefiderocol as monotherapy or combination therapy for the treatment of Gram-negative bacterial infections: the multicentre retrospective CEFI-BAC study.
    Int J Infect Dis. 2025 Dec 6:108305. doi: 10.1016/j.ijid.2025.108305.
    PubMed         Abstract available

  6. ORDONEZ-MENA JM, Gu X, Joy M, Fan X, et al
    Assessing the association between COVID-19 vaccination and thrombotic thrombocytopenia syndrome (ATTEST Study): Analyses of English data, 2020-2022.
    Int J Infect Dis. 2025 Dec 9:108289. doi: 10.1016/j.ijid.2025.108289.
    PubMed         Abstract available

  7. MANDELBOIM M, Atari N, Gur-Arie L, Sefty H, et al
    Age-related distribution of Influenza B and vaccine match in the 2024-2025 season: A multi-season comparative analysis.
    Int J Infect Dis. 2025 Dec 10:108303. doi: 10.1016/j.ijid.2025.108303.
    PubMed         Abstract available

  8. MAEDA K, Miyakawa K, Tanabe M, Kuninaka H, et al
    Risk assessment of SARS-CoV-2 infection from external surfaces and biological samples of COVID-19 corpses.
    Int J Infect Dis. 2025 Dec 10:108298. doi: 10.1016/j.ijid.2025.108298.
    PubMed         Abstract available

  9. NEL I, Minier M, Milojkovic A, De Swardt H, et al
    Alterations of anti-SARS-CoV-2 immune response in children vary according to the nature of their immunosuppression.
    Int J Infect Dis. 2025 Dec 11:108301. doi: 10.1016/j.ijid.2025.108301.
    PubMed         Abstract available


    J Infect

  10. YUE M, Lee S, Tao S, Tomazetto G, et al
    Upper airway transcriptomics early after SARS-CoV-2 infection to identify individuals likely to develop symptomatic infection.
    J Infect. 2025;92:106664.
    PubMed         Abstract available


    J Med Virol

  11. HUANG R, Xu J, Liu Z, Sun T, et al
    Preconception COVID-19 Vaccination Reprograms Fetal Metabolism to Accelerate Intrauterine Recovery and Suppress Persistent Metabolic Memory.
    J Med Virol. 2025;97:e70740.
    PubMed         Abstract available

  12. MCVOY MA, Kummarapurugu AB
    The Role of ACE2 in SARS-CoV-2 Infection, Pathogenesis, and Antiviral Interventions.
    J Med Virol. 2025;97:e70721.
    PubMed         Abstract available

  13. ZOU Y, Kamoi K, Zong Y, Zhang J, et al
    Systematic Review of Postvaccination Ocular Adverse Events: A Comprehensive Analysis of Published Reports.
    J Med Virol. 2025;97:e70747.
    PubMed         Abstract available

  14. WINKEL AMAM, de Jonghe BA, Lap CR, Haverkort ME, et al
    Persistent Symptoms in SARS-CoV-2-Infected and Non-Infected Household Members: A Prospective Cohort Study.
    J Med Virol. 2025;97:e70727.
    PubMed         Abstract available

  15. SIMKIN F, Postans M, Pacchiarini N, Song J, et al
    Variance in the Variants: A Comparison of the Symptomatology of SARS-CoV-2 Variants in Wales, February 2020-July 2022.
    J Med Virol. 2025;97:e70717.
    PubMed         Abstract available

  16. TANG X, Xiao Y, Zhong J, Ding T, et al
    Integrative Multi-Omics Analysis Reveals Age-Associated Molecular Mechanisms in SARS-CoV-2 Infection.
    J Med Virol. 2025;97:e70730.
    PubMed         Abstract available


    J Virol

  17. AHMETAJ-SHALA B, Peacock TP, Baillon L, Swann OC, et al
    Resistance of endothelial cells to SARS-CoV-2 infection in vitro.
    J Virol. 2025 Dec 5:e0120525. doi: 10.1128/jvi.01205.
    PubMed         Abstract available


    JAMA

  18. GIAMARELLOS-BOURBOULIS EJ, Kotsaki A, Kotsamidi I, Efthymiou A, et al
    Precision Immunotherapy to Improve Sepsis Outcomes: The ImmunoSep Randomized Clinical Trial.
    JAMA. 2025 Dec 8:e2524175. doi: 10.1001/jama.2025.24175.
    PubMed         Abstract available


    MMWR Morb Mortal Wkly Rep

  19. LIM S, Vagnone PS, Marshall NC, Lees C, et al
    Detection of Paraburkholderia in Clinical Specimens Associated with Use of Nonsterile Ultrasound Gel for Percutaneous Procedures - United States, Canada, and Israel, May 2023?April 2025.
    MMWR Morb Mortal Wkly Rep. 2025;74:615-621.
    PubMed         Abstract available

  20. IRVING SA, Rowley EAK, Chickery S, Natarajan K, et al
    Effectiveness of 2024-2025 COVID-19 Vaccines in Children in the United States - VISION, August 29, 2024-September 2, 2025.
    MMWR Morb Mortal Wkly Rep. 2025;74:607-614.
    PubMed         Abstract available


    Nature

  21. BIEVER C
    The first global pandemic treaty - and the woman who made it happen.
    Nature. 2025;648:520-521.
    PubMed        


    Science

  22. VAN KERKHOVE MD, Ihekweazu C
    Pandemic security needs national leadership.
    Science. 2025;390:1083.
    PubMed         Abstract available

  23. SCOLES S
    AI tools aim to speed up outbreak modeling.
    Science. 2025;390:1089-1090.
    PubMed         Abstract available

#Influenza and Other Respiratory Viruses Research #References (by AMEDEO, Dec. 15 '25)

 


    Biochem Biophys Res Commun

  1. HU J, Li J, You W, Liu L, et al
    Disruption of the local vRNA structure at the end of HA encoding region interferes with the selective packaging of influenza A virus genome.
    Biochem Biophys Res Commun. 2025;795:153082.
    PubMed         Abstract available

  2. BANGARU MLY, Raghavendra NK
    Helix alpha1 of human ACE2 mimics dsDNA and Spike of SARS-CoV-2 binds DNA.
    Biochem Biophys Res Commun. 2025;793:153020.
    PubMed         Abstract available


    Cell

  3. WASDIN PT, Johnson NV, Janke AK, Held S, et al
    Generation of antigen-specific paired-chain antibodies using large language models.
    Cell. 2025;188:7206-7221.
    PubMed         Abstract available

  4. YAN L, Huang Y, Liu Y, Ge J, et al
    Structural basis for the concurrence of template recycling and RNA capping in SARS-CoV-2.
    Cell. 2025;188:7194-7205.
    PubMed         Abstract available


    Epidemiol Infect

  5. ASPLIN P, Fyles M, Kennedy J, Ward T, et al
    Evaluating Google Trends as a proxy for symptom incidence: insights from the winter COVID-19 infection study in England 2023/24.
    Epidemiol Infect. 2025;153:e136.
    PubMed         Abstract available

  6. MUNCH PK, Hansen CH, Moller FT, Norgaard SK, et al
    COVIDmeter - a questionnaire-based symptom monitoring system for the surveillance of COVID-19 in Denmark, 2020-2023.
    Epidemiol Infect. 2025;153:e134.
    PubMed         Abstract available


    J Epidemiol Community Health

  7. ZHAO M, Yang L, Cheng P, Schwebel D, et al
    Helmet use among cyclists and motorcyclists involved in media-reported road traffic crashes after implementation of the national 'One Helmet, One Belt' campaign in China.
    J Epidemiol Community Health. 2025;80:35-40.
    PubMed         Abstract available


    J Exp Med

  8. ZHANG Q, Conrad TS, Moncada-Velez M, Jiang K, et al
    Autoantibodies neutralizing type I IFNs in a fatal case of H5N1 avian influenza.
    J Exp Med. 2026;223:e20251962.
    PubMed         Abstract available


    J Gen Virol

  9. VAN DIEMEN PM, Ramsay AM, Everett HE, Hurley S, et al
    Experimental infection of alpacas (Vicugna pacos) with influenza C or D viruses results in subclinical upper respiratory tract disease.
    J Gen Virol. 2025;106.
    PubMed         Abstract available


    J Immunol

  10. ALBE JR, Chaudhary A, Khanna A, Weinstein K, et al
    Divergent effects of a Treg-selective IL-2 mutein on influenza-specific T cell responses.
    J Immunol. 2025 Dec 10:vkaf297. doi: 10.1093.
    PubMed         Abstract available


    J Infect

  11. KITANO T, Tsuzuki S, Fukuda H, Yoshida S, et al
    Long-term impact of nirsevimab on prevention of respiratory syncytial virus infection using a real-world global database.
    J Infect. 2025;91:106652.
    PubMed         Abstract available


    J Infect Dis

  12. DAULAGALA P, Leung YWY, Luk LLH, Ho F, et al
    Anti-neuraminidase antibody responses in older adults after consecutive vaccinations with enhanced influenza vaccines: a randomized controlled trial.
    J Infect Dis. 2025 Dec 8:jiaf616. doi: 10.1093.
    PubMed         Abstract available


    J Neurosurg Pediatr

  13. GELMAN K, Fletcher D, Li H, Wen S, et al
    The use of telehealth in pediatric neurosurgery for rural patients of Appalachia.
    J Neurosurg Pediatr. 2025;36:755-763.
    PubMed         Abstract available


    J Virol

  14. KAR J, Hirohama M, Nakayama K, Lee S, et al
    Microtubule detyrosination links inflammasome activation to apoptotic cell death in macrophages upon influenza A virus infection.
    J Virol. 2025 Dec 9:e0184725. doi: 10.1128/jvi.01847.
    PubMed         Abstract available


    J Virol Methods

  15. JAASKELAINEN AE, Pitkaranta A, Haaramo A, Nokso-Koivisto J, et al
    Saliva samples in SARS-Cov-2 virus detection compared to the nasopharyngeal RT-PCR findings in individuals with suspected COVID-19 infection.
    J Virol Methods. 2026;340:115295.
    PubMed         Abstract available

  16. MORWITZER MJ, Zheng YY, Friberg H, Currier JR, et al
    A split GFP approach to assay SARS-CoV-2 spike-dependent cell fusion.
    J Virol Methods. 2026;340:115296.
    PubMed         Abstract available

  17. THIBAUT J, Gambaro F, Geenen C, Hong SL, et al
    A novel methodology for assessing contact tracing precision: Phylogenetic validation of a contact tracing program for COVID-19 in Belgium.
    J Virol Methods. 2026;340:115279.
    PubMed         Abstract available

  18. GOSWAMI P, Chatterjee D, Ghosh S, Paira K, et al
    Ultra-diluted Bryonia alba extract modulates HMOX-1 gene expression to attenuate the pathogenetic effect of SARS-CoV-2 spike protein RBD antigen.
    J Virol Methods. 2026;340:115274.
    PubMed         Abstract available


    MMWR Morb Mortal Wkly Rep

  19. IRVING SA, Rowley EAK, Chickery S, Natarajan K, et al
    Effectiveness of 2024-2025 COVID-19 Vaccines in Children in the United States - VISION, August 29, 2024-September 2, 2025.
    MMWR Morb Mortal Wkly Rep. 2025;74:607-614.
    PubMed         Abstract available

  20. ZAMBRANO LD, Simeone RM, Newhams MM, Payne AB, et al
    Nirsevimab Effectiveness Against Intensive Care Unit Admission for Respiratory Syncytial Virus in Infants - 24 States, December 2024-April 2025.
    MMWR Morb Mortal Wkly Rep. 2025;74:580-588.
    PubMed         Abstract available


    N Engl J Med

  21. NEUZIL KM
    Current and Emerging Approaches to Evaluating Influenza Vaccine Performance.
    N Engl J Med. 2025;393:2361-2362.
    PubMed        


    PLoS Biol

  22. STERTZ S, Karakus U
    A new path to spillover: MHC-II entry of influenza A viruses.
    PLoS Biol. 2025;23:e3003550.
    PubMed         Abstract available


    PLoS Comput Biol

  23. MORRIS DJ, Kennedy L, Black AJ
    Random time-shift approximation enables hierarchical Bayesian inference of mechanistic within-host viral dynamics models on large datasets.
    PLoS Comput Biol. 2025;21:e1013775.
    PubMed         Abstract available

  24. LEFEBVRE A, Marechal V, Gloaguen A, Lambert A, et al
    Unsupervised detection and fitness estimation of emerging SARS-CoV-2 variants: Application to wastewater samples (ANRS0160).
    PLoS Comput Biol. 2025;21:e1013749.
    PubMed         Abstract available

  25. PINERO S, Li X, Liu L, Li J, et al
    Integrative multi-omics framework for causal gene discovery in Long COVID.
    PLoS Comput Biol. 2025;21:e1013725.
    PubMed         Abstract available


    PLoS One

  26. PICARD-MEYER E, Wasniewski M, Boue F, Torres-Maravilla E, et al
    Lung infection in orally inoculated SARS-CoV-2 hamsters.
    PLoS One. 2025;20:e0337915.
    PubMed         Abstract available

  27. HUSSEIN M, Gebreal A, Naeem A, AboElela AM, et al
    Cross-national disparities in healthcare workers' perceptions: Examining fear of infection and confidence in the received COVID-19 vaccines amid emerging variants.
    PLoS One. 2025;20:e0318788.
    PubMed         Abstract available

  28. LU X, Duan Y
    Channels and countermeasures of the COVID-19 pandemic's impact on urban economic resilience: Lessons from China.
    PLoS One. 2025;20:e0338499.
    PubMed         Abstract available

  29. CAO T, Pan W, Liang Z, Quan J, et al
    Investigation of the effect and mechanisms of moxa smoke in the treatment of Influenza A Virus (IAV) infection.
    PLoS One. 2025;20:e0337906.
    PubMed         Abstract available

  30. SMIT PW, Man P, Brand H, Breijer S, et al
    Comparative evaluation of five rapid PCR platforms for respiratory virus detection.
    PLoS One. 2025;20:e0338716.
    PubMed         Abstract available

  31. ABBASIZANJANI H, Bedston S, Akbari A
    Creating a Research-Ready Data Asset version of primary care data for Wales and investigating the impact of COVID-19 on utilisation of primary care services.
    PLoS One. 2025;20:e0338652.
    PubMed         Abstract available

  32. YANG Y, Liang R, Luo Y, Zhu D, et al
    Investigation on the knowledge-attitude-practice of medical students in controlling emerging infectious diseases: A case study of COVID-19.
    PLoS One. 2025;20:e0338708.
    PubMed         Abstract available

  33. JANKOWSKI JM, Sik K, Job V
    The relationship between lay beliefs about the world and pandemic-related beliefs, attitudes, and behaviors.
    PLoS One. 2025;20:e0338367.
    PubMed         Abstract available

  34. SADEH S, Ghaemi A, Soleimani NA, Moghbeli M, et al
    Designing influenza virus-derived cell-penetrating peptides for antigen delivery: Integrating uptake efficiency, safety, and receptor targeting.
    PLoS One. 2025;20:e0338028.
    PubMed         Abstract available

  35. TUFON KA, Foumene TP, Esembeson M, Bolimo AF, et al
    Trends and factors associated with pneumonia mortality at Buea Regional Hospital in Cameroon from 2020 to 2023.
    PLoS One. 2025;20:e0313234.
    PubMed         Abstract available

  36. MARINDA E, Naidoo Y, Magampa M, Pindo A, et al
    Changes in quality of life over time through the lens of young people aged 18-24 in 2016 in Gauteng Province of South Africa.
    PLoS One. 2025;20:e0338312.
    PubMed         Abstract available

  37. CARNEY-KNISELY G, Pek J, Ferketich AK, Padamsee TJ, et al
    Depression and anxiety mediate the relationship between COVID-19 stay-at-home orders and tobacco and marijuana use.
    PLoS One. 2025;20:e0337996.
    PubMed         Abstract available

  38. CONTI S, Pariza P, Wolters A
    A synthetic control evaluation of the use of pulse oximeters in response to the COVID-19 pandemic in England.
    PLoS One. 2025;20:e0337617.
    PubMed         Abstract available

  39. BEGAY RL, Brown HE, Sanderson PR, Harris RB, et al
    Dine traditional medicine use and wellbeing among navajo adults during the COVID-19 pandemic: A cross-sectional study.
    PLoS One. 2025;20:e0337427.
    PubMed         Abstract available

  40. COUDERT JF, Dadachova E, Maignant G, Jonathan S, et al
    Radon exposure and COVID-19 mortality in pre-vaccination period: What links might exist?
    PLoS One. 2025;20:e0337320.
    PubMed         Abstract available

  41. COSTA T
    The impossible confounder: Quantifying the limits of alternative explanations for COVID-19 vaccine effectiveness.
    PLoS One. 2025;20:e0336063.
    PubMed         Abstract available

  42. DIAO YC, Lou MF
    Development and validation of the healthcare provider and family bidirectional digital communication scale.
    PLoS One. 2025;20:e0338410.
    PubMed         Abstract available

  43. GEORGE NA, Bradford L, Hinz A, El Kadi M, et al
    SARS-CoV-2 detection is independent of microbiome composition on surfaces in a major Ontario hospital.
    PLoS One. 2025;20:e0326403.
    PubMed         Abstract available

  44. HUUSKO M, Vuohijoki A, Ristolainen L, Leppilahti J, et al
    Implementation and staff perceptions of a quality assurance system in a finnish private hospital during the COVID-19 Pandemic: A qualitative study.
    PLoS One. 2025;20:e0327271.
    PubMed         Abstract available

  45. PARUBETS S, Naito H
    Predicting economic activity using atmospheric nitrogen dioxide (NO2) satellite data: Evidence from local economic indicators in Japan.
    PLoS One. 2025;20:e0337901.
    PubMed         Abstract available

  46. FUHRMANN V, Tyczynski B, Perez Ruiz de Garibay A, Bingold TM, et al
    The Advanced Organ Support (ADVOS) hemodialysis system fulfills its intended purpose: Analysis of data from 282 patients from the Registry on Extracorporeal Multiple Organ Support (EMOS).
    PLoS One. 2025;20:e0318917.
    PubMed         Abstract available


    Vaccine

  47. CASWELL C, Pullenayegum E, Singh P, Ward BJ, et al
    Sex-differences in influenza vaccine efficacy and immunogenicity among Canadian Hutterite children.
    Vaccine. 2025;72:128102.
    PubMed         Abstract available

  48. WALTER EB, Schlaudecker EP, Talaat KR, Rountree W, et al
    Immunogenicity of mRNA COVID-19 vaccine with either simultaneous or sequentially administered inactivated influenza vaccines: a randomized clinical trial.
    Vaccine. 2025;72:128072.
    PubMed         Abstract available

  49. SONG JY, Cheong HJ
    Understanding the low effectiveness of influenza vaccines in older adults of South Korea: an exploration of contributing factors.
    Vaccine. 2025;71:128076.
    PubMed         Abstract available

  50. MEYER AC, Braegelmann K, Orozco-Ruiz X, Kruppert S, et al
    Comparing uptake of high-dose and standard-dose influenza vaccination at the practice and patient level in Germany.
    Vaccine. 2025;71:128075.
    PubMed         Abstract available

  51. ASKAR M, Adel K, Batke M, Chi Y, et al
    Population effects of influenza vaccination in children and adolescents: Systematic review.
    Vaccine. 2025;71:128040.
    PubMed         Abstract available

  52. RICHARDSON RA, Moon C, Sands CM, Nelson R, et al
    Generation of a shelf-stable, broadly-reactive influenza vaccine formulated with TLR4, TLR7/8, or TLR9 stimulating adjuvants.
    Vaccine. 2025;72:128028.
    PubMed         Abstract available

  53. REEVES C, Miura SST, Chappell AR, Banaag A, et al
    Trends in influenza vaccination uptake in a universally insured population in the united states, 2017-2023.
    Vaccine. 2025;71:128052.
    PubMed         Abstract available

  54. ABBAD A, Lerman B, Ehrenhaus J, Ojeda DS, et al
    Sustained superior humoral immune responses of mRNA vaccines compared to Sputnik V viral vector COVID-19 vaccines in naive and convalescent populations.
    Vaccine. 2025;70:128018.
    PubMed         Abstract available

  55. KIM SH, Kang MG, Jang JG, Kim Y, et al
    Severe COVID-19, vaccination, and mortality among individuals with asthma: A Nationwide population-based cohort study.
    Vaccine. 2025;70:128017.
    PubMed         Abstract available

  56. HAMMOUD M, Smith AKJ, Sachs O, Bavinton BR, et al
    Drivers, barriers, and implications of mpox vaccine uptake in Australia among gay, bisexual, and other men who have sex with men: results from a prospective observational mixed-methods study (2022-2024).
    Vaccine. 2025;70:128041.
    PubMed         Abstract available

  57. LE TOURNEAU N, Sharma A, Pry JM, Haambokoma M, et al
    Drivers of decision-making for future adult vaccines: a best-worst scaling among community members and health care workers in Zambia.
    Vaccine. 2025;70:128003.
    PubMed         Abstract available

  58. DEV AS, Broos HC, Llabre MM, Saab PG, et al
    Examining the independent and interactive roles of intolerance of uncertainty in vaccination intent.
    Vaccine. 2025;70:128008.
    PubMed         Abstract available

  59. HUANG O, Tan BF, Lu CY
    Taiwanese parental perspectives on RSV: knowledge, risks, and acceptance toward immunization.
    Vaccine. 2026;70:128005.
    PubMed         Abstract available

  60. PICHE-RENAUD PP, Buchan CA, Burton C, Chapdelaine H, et al
    Revaccination of individuals with cardiac adverse events following COVID-19 vaccination: A Canadian Immunization Research Network study.
    Vaccine. 2025;70:128016.
    PubMed         Abstract available

  61. CHAU SL, Hung IFN, Luk TT, Chan SSC, et al
    The impacts of long COVID and booster doses of post-infection vaccination among hospital-discharged COVID-19 survivors in Hong Kong: A retrospective observational study.
    Vaccine. 2025;70:128022.
    PubMed         Abstract available

  62. CHAZARIN B, Bhat AS, Sundararaman N, Liu Y, et al
    Longitudinal proteomic and autoantibody signatures after mRNA vaccination in healthy individuals.
    Vaccine. 2025;70:127888.
    PubMed         Abstract available

  63. VAHABI MM, Ketentzi S, Kahraman U, Erdem HA, et al
    A single center's 25-year experience with hepatitis B and pneumoccocal vaccines in heart transplant patients: the impact of the COVID-19 pandemic.
    Vaccine. 2025;70:128023.
    PubMed         Abstract available

  64. VANASSE LT, Safdar B, Self WH, Zhu Y, et al
    Comparison of immunization information systems, electronic medical records, and self-report to ascertain RSV vaccination status among US adults aged >/=60 years, 2023-2024.
    Vaccine. 2025;69:127946.
    PubMed         Abstract available

  65. LASRADO N, Rossler A, McConnell I, Molloy K, et al
    Immunogenicity of JN.1 and KP.2 COVID-19 mRNA vaccines against emerging SARS-CoV-2 variants.
    Vaccine. 2025;69:127997.
    PubMed         Abstract available

  66. SCHUH HB, Delamater P, Proveaux TM, Dudley MZ, et al
    In a shifting policy era: California provider knowledge and practice of medical exemption laws during the COVID-19 pandemic.
    Vaccine. 2026;69:127993.
    PubMed         Abstract available

  67. CRAMER EY, Dada AO, Onofrey S, Pearlman J, et al
    Population-based serosurveys for SARS-CoV-2 transmission 2021-2022, Massachusetts USA.
    Vaccine. 2026;69:127952.
    PubMed         Abstract available

  68. ILBOUDO DP, Simpore A, Sawadogo J, Ouattara AK, et al
    Acceptance, hesitancy, and ethical challenges of the COVID-19 vaccine in sub-Saharan Africa: a systematic review and meta-analysis.
    Vaccine. 2025;69:127966.
    PubMed         Abstract available

  69. MARTINEZ-PEREZ A, Galvez RI, Grifoni A, Sette A, et al
    Impact of the bivalent COVID-19 booster on spike-specific t cell responses.
    Vaccine. 2026;69:127995.
    PubMed         Abstract available

  70. RAUPACH J, Housria Y, Hein S, Schnierle B, et al
    Comparative analysis of a flexible novel vaccine platform based on cell permeable chimeric HBV capsids for mucosal vaccination.
    Vaccine. 2025;69:127987.
    PubMed         Abstract available

  71. CHAPMAN S, Christodoulaki ME, Davey SA, Gaffiero D, et al
    Understanding vaccine hesitancy: The role of fear and message framing in COVID-19 vaccination intention in adults in the UK.
    Vaccine. 2025;69:127999.
    PubMed         Abstract available

  72. LEDDERER L, Nielsen KH, Skodborg L, Fage-Butler A, et al
    Public trust and mistrust of COVID-19 vaccines: A systematic meta-narrative review.
    Vaccine. 2025;69:127947.
    PubMed         Abstract available

  73. GRASSI CM, Feng J, Wahid R, Kandinov B, et al
    Immunogenicity and safety of a SARS-CoV-2 N-terminal domain and receptor-binding domain monovalent XBB.1.5 vaccine in Japanese participants.
    Vaccine. 2025;69:127960.
    PubMed         Abstract available

  74. RANA MM, Haydel B, Carrara G, Gleason C, et al
    Humoral SARS-CoV-2 vaccine responses are durable in solid organ transplant recipients with and without HIV.
    Vaccine. 2025;69:127969.
    PubMed         Abstract available


    Virology

  75. BRICE DC, Andreev K, Miller L, Patton C, et al
    Immunogenicity and efficacy of commercial poultry avian influenza vaccines against HPAI A(H5N1) clade 2.3.4.4b viruses in Mexico.
    Virology. 2025;615:110765.
    PubMed         Abstract available


    Virus Res

  76. LUO L, Lv J
    Stochastic mutation as a mechanism for the emergence of SARS-CoV-2 new variants.
    Virus Res. 2025;362:199667.
    PubMed         Abstract available

Sunday, December 14, 2025

Maize Deity (Chicomecoatl), Aztec Art (c.1450 - c.1521)

 


Public Domain.

Source: 


Link: https://www.wikiart.org/en/aztec-art/maize-deity-chicomecoatl

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History of Mass Transportation: A Stadler DMU, ''the Yellow Train'' during a trial service

 


Par fr:User:Cargocap — fr:Fichier:DSC00218.JPG, CC BY-SA 3.0, https://commons.wikimedia.org/w/index.php?curid=4114677

Source: 


Link: https://fr.wikipedia.org/wiki/Stadler_Rail

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#Human monoclonal #antibodies that target clade 2.3.4.4b #H5N1 hemagglutinin

 


Abstract

The highly pathogenic avian influenza H5N1 virus clade 2.3.4.4b has been spreading globally since 2022, causing mortality and morbidity in domestic and wild birds, as well as in mammals, which underscores its potential to cause a pandemic. Here, we generate a panel of anti-hemagglutinin (HA) human monoclonal antibodies (mAbs) against the H5 protein of clade 2.3.4.4b. To develop human chimeric antibodies, H2L2 Harbor Mice®, which express human immunoglobulin germline genes, were immunized with H5 and N1 recombinant proteins from A/mallard/New York/22-008760-007- original/2022 H5N1 virus. Through hybridoma technology, sixteen fully human mAbs are generated, most of which show cross-reactivity against H5 proteins from different clade 2.3.4.4 virus variants. Fourteen out of the sixteen mAbs neutralize the virus in vitro. The mAbs with the strongest hemagglutination inhibition activity also demonstrate greater neutralizing capacity and show increased protective effects in vivo when administered prophylactically or therapeutically in a murine H5N1 challenge model. Using cryo-electron microscopy, we identify a cross-clonotype conserved motif that bound a hydrophobic groove on the head domain of H5 HA. Akin to mAbs against severe acute respiratory syndrome coronavirus 2 during the coronavirus 2019 pandemic, these mAbs could serve as treatments in case of a widespread H5N1 epidemic or pandemic.

Source: 


Link: https://www.nature.com/articles/s41467-025-66829-y

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Saturday, December 13, 2025

#SARS-CoV-2 within-host population expansion, diversification and #adaptation in #zoo #tigers, #lions and #hyenas

 


Abstract

SARS-CoV-2 rapidly adapts to new hosts following cross-species transmission; this is highly relevant as unique within-host variants have emerged following infection of susceptible wild and domestic animal species. Furthermore, SARS-CoV-2 transmission from animals (e.g., white-tailed deer, mink, domestic cats, and others) back to humans has been observed, documenting the potential of animal-derived variants to infect humans. Here, we investigate SARS-CoV-2 evolution and host-specific adaptation during an outbreak in Amur tigers (Panthera tigris altaica), African lions (Panthera leo), and spotted hyenas (Crocuta crocuta) at Denver Zoo in 2021. SARS-CoV-2 genomes from longitudinal samples from 16 individuals are evaluated for within-host variation and genomic signatures of selection, and we determine that the outbreak was likely initiated by a single spillover of a rare Delta sublineage. Within-host virus populations rapidly expand and diversify, and we detect signatures of purifying and positive selection, including strong positive selection in hyenas and in the nucleocapsid (N) gene in all animals. Four candidate species-specific adaptive mutations are identified: N A254V in lions and hyenas, and ORF1a E1724D, spike T274I, and N P326L in hyenas. These results reveal accelerated SARS-CoV-2 adaptation following host shifts in three non-domestic species in daily contact with humans.

Source: 


Link: https://www.nature.com/articles/s41467-025-66402-7

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History of Mass Transportation: The Renault ABH Autorail in service with the Chemins de Fer de la Corse

 


Par Didier Duforest — Travail personnel, CC BY-SA 3.0, https://commons.wikimedia.org/w/index.php?curid=12918351

Source: 


Link: https://fr.wikipedia.org/wiki/Autorail_Renault#

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#Risk #assessment of #SARS-CoV-2 #infection from external #surfaces and biological samples of #COVID19 corpses

 


Highlights

• Infectious SARS-CoV-2 were detected in nasopharynx and on the surface of corpses

• Viral load and symptom-to-discovery time are linked to viral infectivity

• Infectious viruses were not found in the body fluids

• Our findings highlight strict infection control for COVID-19 corpse handling


Abstract

Objectives

The SARS-CoV-2 pandemic has resulted in millions of deaths worldwide. However, the risk of transmission from COVID-19 corpses remain unclear, posing challenges for forensic medicine in establishing effective infection control measures during autopsies. This study aimed to investigate the presence of infectious SARS-CoV-2 in corpses and identify factors affecting viral infectivity.

Methods

External examinations of 76 corpses with COVID-19 were performed, and nasopharyngeal, perioral, hand swabs, serum, cerebrospinal fluid (CSF), and urine samples were collected. Viral RNA was quantified by using digital PCR, and infectious viruses were assessed via isolation. Multivariate logistic regression analysis was used to identify factors associated with viral infectivity.

Results

Infectious viruses were isolated from the nasopharynx (51%), perioral region (10.3%), and hands (1.8%). Common predictive factors for nasopharyngeal and perioral viral infectivity were a higher viral load and shorter time from symptom onset. Detectable viral RNA in serum was also associated with nasopharyngeal infectivity. No infectious viruses were detected in serum, CSF, or urine samples.

Conclusions

Infectious SARS-CoV-2 was detected in the nasopharynx and on the surface of COVID-19 corpses. Viral infectivity correlated with viral load and time from symptom onset, highlighting the importance of strict infection control when handling COVID-19 corpses.

Source: 


Link: https://www.ijidonline.com/article/S1201-9712(25)00520-X/fulltext

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Friday, December 12, 2025

Novel Highly Pathogenic Avian #Influenza #H5N1 Virus, #Argentina, 2025

 


Abstract

Genomic sequencing of reemerging highly pathogenic avian influenza A(H5N1) virus detected in Argentina in February 2025 revealed novel triple-reassortant viruses containing gene segments from Eurasian H5N1 and low pathogenicity viruses from South and North American lineages. Our findings highlight continued evolution and diversification of clade 2.3.4.4b H5N1 in the Americas.

Source: 


Link: https://wwwnc.cdc.gov/eid/article/31/12/25-0783_article

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#USA, #Wastewater Data for Avian #Influenza #H5 (#US CDC, Dec. 12 '25)

 


{Excerpt}

Time Period: November 30, 2025 - December 06, 2025

-- H5 Detection2 site(s) (0.5%)

-- No Detection390 site(s) (99.5%)

-- No samples in last week54 site(s)




(...)

Source: 


Link: https://www.cdc.gov/nwss/rv/wwd-h5.html

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Safety and immunogenicity of a #Nipah virus #vaccine (HeV-sG-V) in adults: a single-centre, randomised, observer-blind, placebo-controlled, phase 1 study

 


Summary

Background

First discovered in 1999 in Malaysia, Nipah virus (NiV) causes yearly outbreaks throughout south and southeast Asia with associated mortality rates of 40–75%. Due to the structural and sequence similarities between the NiV and Hendra virus (HeV) attachment G glycoproteins, and the extensive extant evidence of the ability of a recombinant soluble glycoprotein G (HeV-sG) to provide heterologous cross-protective immunity when used as vaccine (HeV-sG-V), this study aimed to evaluate HeV-sG-V for safety, tolerability, and immunogenicity against NiV.

Methods

We conducted a phase 1, single-centre, randomised, observer-blind, placebo-controlled study. Eligible participants were aged 18–49 years, healthy, and not pregnant; participants were ineligible if they were immunocompromised, had received blood products within 6 months of enrolment, had potential exposure to NiV or HeV, or had known allergies to components of the vaccine. Participants were randomly assigned in a 5:1 ratio to receive either one or two doses of the vaccine candidate (at 10 μg for the first cohort; 30 μg at days 1 and either days 8 or 29 for cohort 2; and 100 μg with the same timing for cohort 3) or placebo. The primary endpoints were solicited and unsolicited adverse events, clinically significant laboratory test result abnormalities, medically attended adverse events, and serious adverse events. Secondary endpoints were serum IgG binding via ELISA and neutralising antibody responses against prototypical NiV Bangladesh (NiVB) and NiV Malaysia (NiVM) reporter viruses.

Findings

Between Feb 24, 2020, and Oct 6, 2021, 268 participants were screened, and 192 were enrolled. 173 (90%) participants met the per-protocol criteria. Mild-to-moderate injection site pain was the most commonly reported adverse event. No serious adverse events, hospitalisations, or deaths were reported. The immune response to HeV-sG-V was dose-dependent; a single administration was not sufficiently immunogenic, whereas two administrations were immunogenic, with the highest response rates observed among vaccinees that received two administrations of the 100 μg HeV-sG-V 28 days apart (neutralising antibody geometric mean titres rose dramatically 7 days after the second investigational product dose, reaching 1485·6 (990·5–2228·1) and 2581·9 (147·1–3194·2) for NiVB and NiVM, respectively).

Interpretation

All three doses and regimens of HeV-sG-V had a tolerable risk profile and were able to induce an immune response. The induction of antibodies within 1 month of vaccination, along with the persistence afforded by two dosages, suggests the vaccine candidate has potential for reactive outbreak control and preventive use.

Funding

Coalition for Epidemic Preparedness Innovations (CEPI).

Source: 


Link: https://www.thelancet.com/journals/lancet/article/PIIS0140-6736(25)01390-X/abstract?rss=yes

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#Vaccine-induced #antigenic #drift of a #human-origin #H3N2 #Influenza A virus in swine alters glycan binding and sialic acid avidity

 


Abstract

Interspecies transmission of human influenza A viruses (FLUAV) to swine occurs frequently, yet the molecular factors driving adaptation remain poorly understood. Here we investigated how vaccine-induced immunity shapes the evolution of a human-origin H3N2 virus in pigs using an in vivo sustained transmission model. Pigs (seeders) were vaccinated with a commercial inactivated swine vaccine and then infected with an antigenically distinct FLUAV containing human-origin HA/NA. Contact pigs were introduced two days later. After 3 days, seeder pigs were removed, and new contacts introduced. This was repeated for a total of 4 contacts. Sequencing of nasal swab samples showed the emergence of mutations clustered near the HA receptor binding site, enabling immune escape and abolishing binding to N-glycolylneuraminic acid. Mutant viruses recognized α2,6-sialosides with 3 N-acetyllactosamine repeats, which are rare in swine lungs, while the parental virus bound structures with a minimum of 2 repeats. Adaptative HA mutations enhanced avidity for α2,6-linked sialic acid, likely compensating for the low abundance of extended glycans. Notably, residues outside the canonical HA binding pocket contribute to glycan binding, suggesting a trade-off between receptor breadth and avidity. These findings show that non-neutralizing immunity promotes viral adaptation by fine-tuning receptor engagement and immune evasion.


Competing Interest Statement

The authors have declared no competing interest.

Source: 


Link: https://www.biorxiv.org/content/10.64898/2025.12.10.693614v1

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High pathogenicity avian #influenza virus #H5N1 (clade 2.3.4.4b) drives mass #mortality in Eurasian #crane (Grus grus) populations in #Germany, 2025

 


Abstract

In autumn 2025, an unprecedented mass mortality event was observed among the western migrating subpopulation of Eurasian cranes (Grus grus) in Germany. Systemic infection with highly pathogenic avian influenza virus H5N1, clade 2.3.4.4b, genotype DI.2.1, was identified as the cause of acute death. The gregarious behavior of cranes at feeding and resting sites likely has contributed to the rapid and massive dissemination of viruses within the crane population.


Competing Interest Statement

The authors have declared no competing interest.


Funder Information Declared

European Union, 101084171

Source: 


Link: https://www.biorxiv.org/content/10.64898/2025.12.08.692485v1

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