Sunday, June 29, 2025

#H5N1 Avian #Influenza: A Narrative #Review of Scientific Advances and #Global #Policy Challenges

Abstract

The H5N1 avian influenza virus continues to evolve into genetically diverse and highly pathogenic clades with increased potential for cross-species transmission. Recent scientific advances have included the development of next-generation vaccine platforms, promising antiviral compounds, and more sensitive diagnostic tools, alongside strengthened surveillance systems in both animals and humans. However, persistent structural challenges hinder global readiness. Vaccine production is heavily concentrated in high-income countries, limiting equitable access during potential pandemics. Economic and logistical barriers complicate the implementation of control strategies such as vaccination, culling, and compensation schemes. Gaps in international coordination, public communication, and standardization of protocols further exacerbate vulnerabilities. Although sustained human-to-human transmission has not been documented, the severity of confirmed infections and the rapid global spread among wildlife and domestic animals underscore the urgent need for robust preparedness. International organizations have called for comprehensive pandemic response plans, enhanced multisectoral collaboration, and investment in targeted research. Priorities include expanding surveillance to asymptomatic animal hosts, evaluating viral shedding and transmission routes, and developing strain-specific and universal vaccines. Strengthening global cooperation and public health infrastructure will be critical to mitigate the growing threat of H5N1 and reduce the risk of a future influenza pandemic.

Source: Viruses, https://www.mdpi.com/1999-4915/17/7/927

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{A family cluster of cases:} #Mother, #son contract #H5N1 #birdflu in #Cambodia

 


PHNOM PENH, June 29 (Xinhua) -- A 46-year-old Cambodian mother and her 16-year-old son have been confirmed positive for H5N1 human avian influenza, bringing the total number of cases to 10 so far this year, the Ministry of Health said in a statement on Sunday.

Both victims live in Lbeuk village of Puok district in northwest Siem Reap province.

"According to queries, there were sick and dead poultry at the patients' home and their neighbors' homes as well as in the village, and the patients had been in contact with sick and dead chickens and cooked them for food," it added.

Health authorities are looking into the source of the infection and are examining any suspected cases or people who have been in contact with the victims in order to prevent an outbreak in the community.

Tamiflu (oseltamivir), an antiviral drug to prevent the bird flu from spreading, was also given out to people who had direct contact with the patients, the statement said.

So far this year, the kingdom recorded 10 human cases of H5N1 bird flu, with five deaths, according to the Ministry of Health. 

Source: Xinhua, https://english.news.cn/asiapacific/20250629/d1fbe0711829482d866c9cbda2bb0a03/c.html

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Detection of clade 2.3.4.4b #H5N1 high pathogenicity avian #influenza virus in a #sheep in #UK, 2025



Abstract

Clade 2.3.4.4b H5N1 high pathogenicity avian influenza virus (HPAIV) continues to pose a significant global threat, affecting wild and domestic avian populations, and mammalian species. In early 2024, H5N1 HPAIV was detected in dairy cattle in the United States of America, where it has continued to circulate, with sporadic detections also reported in other ruminant species. The detection of high viral loads in milk from infected cattle, has resulted in several human infections, underscoring the zoonotic potential of these viruses. In response, several countries have intensified surveillance in non-avian species to evaluate the potential for undetected viral circulation in captive mammals. In Great Britain, bulk milk tank testing of cattle and targeted surveillance of captive mammalian species on an infected premises is undertaken in accordance with the outcome of a rapid risk assessment undertaken to determine the epidemiological links between the poultry and captive mammals. A result of this testing was the first recorded detection of clade 2.3.4.4b H5N1 HPAIV in a sheep in March 2025, identified on an infected poultry premises in Great Britain. An initial seropositive result in a single ewe triggered further investigation, confirming serological positivity across repeated sampling and the presence of viral RNA in milk samples. This detection was confined to a single animal and was likely attributable to proximity to infected poultry and a presumed heavily contaminated environment. The implications of this ruminant detection are discussed in the context of interspecies transmission and surveillance strategies.

Source: BioRxIV, https://www.biorxiv.org/content/10.1101/2025.06.27.661969v1

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Saturday, June 28, 2025

Phylogenetic and #Mutation #Analysis of #Hemagglutinin Gene from Highly Pathogenic Avian #Influenza Virus #H5 Clade 2.3.4.4b in South #America

Abstract

The Highly Pathogenic Avian Influenza Virus (HPAIV) H5 clade 2.3.4.4b has caused severe outbreaks in domestic and wild birds worldwide since its emergence in 2014, and especially since 2020, with outbreaks in Europe and North America. The introduction of the virus into South America was reported for the first time in Colombia in October 2022, followed by outbreaks in other South American countries affecting poultry, wild birds, mammals, and humans. In this study, a phylogenetic and mutation analysis of the hemagglutinin (HA) gene of HPAIV H5N1 2.3.4.4b viruses isolated in South America was performed to analyze its evolution and its transmission and zoonotic potential. The analysis shows an increase in the viral effective population size between April and June 2022, which was followed by multiple outbreaks of HPAIV H5N1 clade 2.3.4.4b in South America. Moreover, the virus variants evolved from a recent common ancestor estimated to have existed in June 2017. The mean rate of evolution of the HA gene was 6.95 × 10−3 substitutions per site per year, and the sequence analysis of HA identified a mutation (D171N) located at antibody binding sites and viral oligomerization interfaces, with implications for immune response evasion and new host species infection. Additionally, viral strains from South America share the substitutions L104M, T156A, P181S, and V210A, compared to the vaccine strain A/chicken/Ghana/AVL763/2021. Understanding the dynamics of viral evolution and transmission is essential for effective prevention strategies to mitigate future outbreaks.

Source: Viruses, https://www.mdpi.com/1999-4915/17/7/924

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History of Mass Transportation: The FS Aln 442 Diesel Multiple-Unit


Di Giorgio Stagni - http://www.stagniweb.it/foto6.asp?File=tee448&righe=1&inizio=45&InizioI=1&RigheI=100&Col=5, CC BY-SA 3.0, https://commons.wikimedia.org/w/index.php?curid=96379237

Source: Wikipedia, https://it.wikipedia.org/wiki/Automotrici_FS_ALn_442-448

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#Coronavirus Disease Research #References (by AMEDEO, June 28 '25)

 


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    Clin Infect Dis

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    Lancet


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#Influenza and Other Respiratory Viruses Research #References (by AMEDEO, June 28 '25)

 


    Antimicrob Agents Chemother

  1. MENG X, Zhang C, Wang X, Shi J, et al
    A branched peptide targets virus and host to block influenza virus and rhinovirus entry.
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    PubMed         Abstract available


    Antiviral Res

  2. HUSSAIN S, Meijer A, Govorkova EA, Dapat C, et al
    Global update on the susceptibilities of influenza viruses to neuraminidase inhibitors and the cap-dependent endonuclease inhibitor baloxavir, 2020-2023.
    Antiviral Res. 2025 Jun 24:106217. doi: 10.1016/j.antiviral.2025.106217.
    PubMed         Abstract available


    Biochemistry

  3. PANKRATOVA Y, Hong M
    Side Chain Structures of the Proton-Selective Histidine and Gating Tryptophan in Influenza BM2 Reveal Both Conservation and Variation of the Proton Conduction Mechanism.
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    PubMed         Abstract available


    Cell

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    PubMed         Abstract available


    Epidemiol Infect

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    J Infect

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    PubMed         Abstract available

  8. YANG J, Chen X, Li X, Zhang Y, et al
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    PubMed         Abstract available


    J Infect Dis

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    Highly Pathogenic Avian Influenza Virus A/H5N1 subclade 2.3.4.4 b isolated from a European grey seal (Halichoerus grypus) is highly virulent in ferrets.
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    Evaluating the Breadth and Reliability of Influenza Vaccine Protection Indicators: a Secondary Analysis of an Animal Challenge Trial.
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    PubMed         Abstract available


    MMWR Morb Mortal Wkly Rep

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    PubMed         Abstract available


    PLoS Biol

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    PLoS Comput Biol

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    Proc Natl Acad Sci U S A

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    Virology

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    PubMed         Abstract available

Highly Pathogenic Avian #Influenza Virus A #H5N1 subclade 2.3.4.4 b isolated from a European grey #seal (Halichoerus grypus) is highly virulent in #ferrets

 


Abstract

Highly pathogenic avian influenza A viruses subtype H5N1 (HPAIV H5N1), subclade 2.3.4.4b infect multiple avian and mammalian species, posing a potential pandemic risk. Here we describe the outcomes of infection of ferrets with a HPAIV H5N1 virus, isolated from a European grey seal in 2023, compared with an older HPAIV H5N1 (A/Indonesia/05/2005). Overall, infection of ferrets with A/grey seal/Netherlands/302603/2023 caused more rapid mortality than infection of ferrets with A/Indonesia/05/2005. Animals developed severe pneumonia and irreversible hypothermia, associated with high levels of virus replication and histopathological changes in the respiratory tract and peripheral organs. As animal models for severe avian influenza virus infections in humans play a key role in the development of intervention strategies against these infections, these findings highlight the importance of using updated ferret models based on circulating virus strains.

Source: Journal of Infectious Diseases, https://academic.oup.com/jid/advance-article/doi/10.1093/infdis/jiaf348/8176868

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Friday, June 27, 2025

Seventh #Update on #Developments in #Iran (#War) (#IAEA, June 27 '25)

 


Radiation levels in the Gulf region remain normal following the 12-day conflict that severely damaged several nuclear facilities in Iran, Director General Rafael Mariano Grossi of the International Atomic Energy Agency (IAEA) said today.

Citing regional data reported regularly to the IAEA through the International Radiation Monitoring System (IRMIS), Director General Grossi noted that this 48-nation network would have detected an important radioactive release from any damaged nuclear power reactor.

“From a nuclear safety perspective, Iran’s Bushehr Nuclear Power Plant and the Tehran Research Reactor represented our main concern as any strike affecting those facilities – including their off-site power lines – could have caused a radiological accident with potential consequences in Iran as well as beyond its borders in the case of the Bushehr plant. It did not happen, and the worst nuclear safety scenario was thereby avoided,” Director General Grossi said.

Stressing again that nuclear facilities should never be attacked, he reiterated the IAEA’s current assessment – based on information received from Iran’s Nuclear Regulatory Authority – that this month’s Israeli and U.S. strikes on Iranian nuclear sites would have caused localized radioactive releases inside the impacted facilities and localized toxic effects, but there has been no report of increased off-site radiation levels.

The Director General also emphasised the need for IAEA inspectors to continue their verification activities in Iran, as required under its Comprehensive Safeguards Agreement (CSA) with the Agency.

Source: International Atomic Energy Agency, https://www.iaea.org/newscenter/pressreleases/update-on-developments-in-iran-7

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Production and Immune Response Against #Pandemic #Influenza Candidate #Vaccines as Preparedness Against the Circulating #H5N1 Influenza Viruses

Abstract

Background/Objectives:

H5N1 influenza viruses are spreading worldwide and threaten global public health. Preparedness is necessary to mitigate the worst-case scenario should an H5N1 influenza pandemic occur and justify the development of vaccines against circulating H5N1 viruses of concern. 

Methods

The production and characterization of egg-based split and inactivated H5Nx of three distinct monovalent antigens from clades 2.3.4.4b, 2.3.2.1c, and 2.3.4 were performed at an industrial scale. These antigens were formulated and their immune responses, when combined or not with IB160 squalene-based oil-in-water emulsion adjuvant in a rat model, were evaluated in a one- or two-dose immunization schedule. IgG antibodies, hemagglutination inhibitions, and microneutralization titers were measured for vaccine-induced immunity and cross-reactivity. 

Results

Three monovalent vaccines from clades 2.3.4.4b, 2.3.2.1c, and 2.3.4 were produced at an industrial scale and characterized. The immune responses against the monovalent vaccines showed a clade-specific antibody response and the need to combine with IB160 adjuvant for a required immune response. 

Conclusions

Considering the candidate vaccine viruses (CVVs) with the testing potency reagents available and that the antibody response obtained against the CVVs produced was clade-specific, IDCDC RG-71A is the indicated CVV for the predominant currently circulating H5N1 influenza virus of clade 2.3.4.4b and must be combined with adjuvant to induce a higher and efficacious immune response in a two-dose immunization protocol.

Source: Vaccines (Basel), https://www.mdpi.com/2076-393X/13/6/620

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#Mpox, Multi-country external #situation #report no. 54 published 27 June (#WHO)



{Summary)

KEY FIGURES 

{Area - Number of reported confirmed cases - Number of deaths among confirmed cases - Number of reporting countries}

-- Global (1 Jan – 31 May 2025)* - 24 672 - 82 - 75 

Key countries (01 Jan – 22 June 2025)

- Democratic Republic of the Congo - 12 208 - 22 - ...

- Uganda - 5636 - 31  - ...

- Sierra Leone - 4294 - 28 - ...

- Burundi - 1079 - 0 - ...

{*} Most recent global surveillance data available.


Highlights

In May 2025, a total of 6823 confirmed mpox cases and 16 deaths (Case Fatality Ratio: 0.2%) were reported from 49 countries across all WHO regions.

The majority of mpox cases continue to be reported from the WHO African Region, with 18 countries currently experiencing active ongoing transmission.

Since the last report, Ethiopia and Italy have reported their first cases of mpox due to clade Ib monkeypox virus (MPXV). In addition, North Macedonia, the Republic of the Congo, and Togo have reported their first cases of mpox clade IIb MPXV. Albania has reported its first mpox case, and genomic sequencing analysis is underway to determine the clade.

Community transmission of clade Ib MPXV remains limited to countries in Central and East Africa.

In Sierra Leone, the epidemic trend is consistently declining, although recent data should be interpreted with caution due to reporting delays.

Eleven African countries have received mpox vaccines, of which seven have started mpox vaccination. More than 731 000 doses of the MVA-BN vaccine have been administered to date.

WHO has updated its guideline on clinical management and infection prevention and control for mpox.

The WHO Director-General determined that the ongoing upsurge of mpox continues to constitute a public health emergency of international concern (PHEIC), following the fourth meeting of the International Health Regulations (IHR) Emergency Committee on 5 June 2025.

(...)

Source: World Health Organization, https://www.who.int/publications/m/item/multi-country-outbreak-of-mpox--external-situation-report--54---27-june-2025

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#Evolution of #antibody cross-reactivity to #influenza #H5N1 #neuraminidase from an N2-specific germline

Abstract

The ongoing spread of highly pathogenic avian influenza H5N1 clade 2.3.4.4b virus in animals and occasional spillover to humans have raised concerns about a potential H5N1 pandemic. Although recent studies have shown that pre-existing human antibodies can recognize H5N1 neuraminidase, there is a lack of molecular understanding of how this cross-reactivity develops. Using a phage display antibody library derived from 245 healthy donors, this study isolates an antibody, known as HB420, that cross-reacts with the neuraminidases of human H3N2 and avian H5N1 clade 2.3.4.4b viruses and confers protection in vivo. Cryo-EM analysis shows that HB420 targets the neuraminidase active site by mimicking sialic acid binding through a single Asp residue. Additionally, the inferred germline of HB420 is N2-specific but acquires cross-reactivity to H5N1 neuraminidase through somatic hypermutations. Overall, our findings provide insights into how neuraminidase antibody evolves breadth, which has important implications for the development of broadly protective influenza vaccines.

Source: BioRxIV, https://www.biorxiv.org/content/10.1101/2025.06.20.660733v1

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#USA, Monitoring for Avian #Influenza A(#H5) Virus In #Wastewater (US CDC, June 27 '25)

 


{Excerpts}

Time Period: June 15, 2025 - June 21, 2025

- H5 Detection3 sites (0.8%)

- No Detection367 sites (99.2%)

- No samples in last week55 sites




(...)

Source: US Centers for Disease Control and Prevention, https://www.cdc.gov/bird-flu/h5-monitoring/index.html

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#Global #update on susceptibilities of #influenza viruses to #neuraminidase #inhibitors and the cap-dependent endonuclease inhibitor #baloxavir, 2020–2023

Highlights

• Antiviral susceptibility to NA inhibitors and PA inhibitor baloxavir was determined for seasonal and zoonotic influenza viruses circulating globally during 2020–2023.

• Low global frequencies (0.1-0.2%) of seasonal influenza viruses with reduced or highly reduced inhibition by NAI inhibitors were observed as in previous years.

• Low global frequencies of seasonal influenza viruses (∼ 0.1%) with reduced susceptibility to baloxavir were observed, with the rate in Japan elevated (3.3%) in 2022–2023, as has been seen previously.

• For zoonotic viruses, 2.7% contained genetic markers associated with reduced or highly reduced inhibition to NA inhibitors and none contained markers associated with reduced susceptibility for baloxavir.

• For the treatment of influenza, NA inhibitors and baloxavir remain suitable.


ABSTRACT

Antiviral susceptibility of influenza viruses is monitored by the World Health Organization Global Influenza Surveillance and Response System. This study describes a global analysis of the susceptibility of influenza viruses to neuraminidase (NA) inhibitors (NAIs, oseltamivir, zanamivir, peramivir, laninamivir) and the cap-dependent endonuclease inhibitor (CENI, baloxavir) for three periods (May to May for 2020–2021, 2021–2022 and 2022–2023). In particular, global influenza activity declined significantly in 2020-2021 and 2021-2022 when compared to the pre-pandemic period of COVID-19. Combined phenotypic and NA sequence-based analysis revealed that the global frequency of seasonal influenza viruses with reduced or highly reduced inhibition (RI/HRI) by NAIs remained low, 0.09% (2/2224), 0.12% (27/23465) and 0.23% (124/53917) for 2020–2021, 2021–2022 and 2022–2023, respectively. As in previous years, NA-H275Y in A(H1N1)pdm09 viruses was the most frequent substitution causing HRI by oseltamivir and peramivir. Sequence-based analysis of polymerase acidic (PA) protein supplemented with phenotypic testing revealed low global frequencies of seasonal influenza viruses with reduced susceptibility (RS) to baloxavir, 0.07% (1/1376), 0.05% (9/18380) and 0.12% (48/39945) for 2020–2021, 2021–2022 and 2022–2023, respectively; commonly associated substitutions were PA-I38T/M/L. In Japan, the rate was 3.3% (16/488) during 2022–2023, with 11 A(H3N2) viruses having PA-I38T/M substitutions. For zoonotic viruses, 2.7% (3/111) contained substitutions, one each NA-H275Y, NA-S247N and NA-N295S, associated with RI/HRI NAI phenotypes, and none contained PA substitutions associated with RS to baloxavir. In conclusion, the great majority of seasonal and zoonotic influenza viruses remained susceptible to NAIs and CENI baloxavir.

Source: Antiviral Research, https://www.sciencedirect.com/science/article/abs/pii/S0166354225001433?via%3Dihub

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Thursday, June 26, 2025

#Mycoplasma pneumoniae #Infections in Hospitalized #Children — #USA, 2018–2024

Summary

- What is already known about this topic?

-- Mycoplasma pneumoniae is a common cause of community-acquired pneumonia (CAP) in school-aged children. In the United States, M. pneumoniae infection prevalence decreased during the COVID-19 pandemic and remained low through 2023.

- What is added by this report?

-- The number of hospital discharges of children with M. pneumoniae–associated CAP from U.S. pediatric hospitals increased sharply in 2024, accounting for approximately one half of hospitalized children with CAP. This number included children aged <5 years, a group in which M. pneumoniae infections have historically been less commonly reported. Data on length of hospitalization and intensive care unit admissions indicate that M. pneumoniae infections in 2024 were not more severe than 2018–2023 infections.

- What are the implications for public health practice?

-- Increased awareness among health care providers might improve diagnosis and could guide treatment of M. pneumoniae infections among children of all ages, especially during periodic increases in M. pneumoniae circulation and among children requiring hospitalization.


Abstract

Mycoplasma pneumoniae is a common bacterial cause of respiratory infection and a leading cause of childhood community-acquired pneumonia (CAP). Increases in M. pneumoniae infection occur every 3–5 years. In the United States, M. pneumoniae prevalence decreased during and immediately after the COVID-19 pandemic. Information from 42 U.S. children’s hospitals that provided information to the Pediatric Health Information System, a database of clinical and resource use information, was used to identify discharge diagnostic codes for 2018–2024 indicating M. pneumoniae infection. M. pneumoniae–associated CAP incidence among children aged ≤18 years was significantly higher in 2024 (12.5 per 1,000 hospitalizations) than during 2018–2023 (2.1). During the study period, an M. pneumoniae diagnostic code was listed in 11.5% of pediatric CAP hospitalizations, peaking at 53.8% in July 2024. Among pediatric M. pneumoniae CAP cases, the highest percentage occurred among children aged 6–12 years (42.6%), followed by children aged 2–5 years (25.7%) and 13–18 years (21.1%). The lowest occurred among those aged 12–23 months (6.4%) and 0–11 months (4.2%). M. pneumoniae infections in 2024 were not more severe than 2018–2023 infections, as assessed by length of hospitalization and percentage of patients admitted to an intensive care unit. The increase in M. pneumoniae infections in the United States in 2024 might be higher than previous periodic increases because the susceptible population was larger after sustained low incidence during and immediately after the COVID-19 pandemic. Health care providers should be aware of the periodicity of M. pneumoniae CAP and consider testing for this pathogen as a cause of respiratory illness among children of all ages.

Source: US Centers for Disease Control and Prevention, MMWR, https://www.cdc.gov/mmwr/volumes/74/wr/mm7423a1.htm?s_cid=mm7423a1_e&ACSTrackingID=USCDC_921-DM147954&ACSTrackingLabel=Week%20in%20MMWR%3A%20Vol.%2074%2C%20June%2026%2C%202025&deliveryName=USCDC_921-DM147954

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#UK {#Wales} - High pathogenicity avian #influenza #H5N1 viruses (#poultry) (Inf. with) - Immediate notification



{Pembrokeshire, Wales} A backyard flock of 120 laying hens. Increased mortality and other clinical signs consistent with avian influenza (AI) were reported. Samples were collected and tested positive for highly pathogenic avian influenza (HPAI) H5N1.

Source: WOAH, https://wahis.woah.org/#/in-review/6579

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Wednesday, June 25, 2025

Highly Pathogenic Avian #Influenza A(#H5N1) Virus: How Far Are We from a New #Pandemic?

Simple Summary

The present commentary deals with the pandemic risk brought about by the highly pathogenic avian influenza (HPAI) A(H5N1) virus. Such a pandemic alarm is justified, among others, by the progressively and rapidly expanding range of virus-susceptible hosts, including humans alongside a significant number of domestic and wild avian and mammalian species, several of which appear to be geographically and phylogenetically distant from each other. Despite its well-established zoonotic potential, no clear-cut evidence of a sustained and efficient HPAI A(H5N1) virus interhuman transmission has thus far been reported. Should this happen in a more or less near future, it could pave the way for a new pandemic. Based upon the above, a “One Health, One Earth, One Ocean”-focused, holistic approach would be the necessary prerequisite to deal in an appropriate way with the HPAI A(H5N1) virus-associated zoonotic and pandemic risk.


Abstract

The focus of this commentary is represented by the pandemic risk associated with the highly pathogenic avian influenza (HPAI) A(H5N1) virus, clade 2.3.4.4b. More in detail, the herein dealt pandemic alarm appears to be primarily justified by the huge and progressively growing number of virus-susceptible domestic and wild birds and mammals, including threatened marine mammal species like South American sea lions and elephant seals as well as harbour porpoises, bottlenose dolphins and polar bears. Of major concern is the susceptibility of dairy cattle to HPAI A(H5N1) virus, particularly the documented and unprecedented colonization of host’s mammary gland tissue, resulting in viral shedding through the milk alongside a large series of cases of infection in dairy farm workers in several USA locations. Despite well-documented zoonotic capability, no evidences of a sustained and efficient HPAI A(H5N1) viral transmission between people have been hitherto reported. If this were to happen sooner or later, a new pandemic might consequently arise. Therefore, keeping all this in mind and based upon the lessons taught by the COVID-19 pandemic, a “One Health, One Earth, One Ocean”-centered approach would be absolutely needed in order to deal in the most appropriate way with the HPAI A(H5N1) virus-associated zoonotic and pandemic risk.

Source: Veterinary Sciences, https://www.mdpi.com/2306-7381/12/6/566

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#Denmark - #Influenza A #H5N1 viruses of high pathogenicity (Inf. with) (non-poultry including wild birds) (2017-) - Immediate notification


Credit: Wikipedia. By Bengt Nyman from Vaxholm, Sweden - Larus canus 2203, CC BY 2.0, https://commons.wikimedia.org/w/index.php?curid=49877446

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On the 16th of January 2025, a herring gull was found dead near a wildlife care station. The gull was received at National Reference Laboratory on the 13th of May 2025, and samples from the bird tested positive for HPAI H5N1 on the 20th of June 2025.

Source: WOAH, https://wahis.woah.org/#/in-review/6574

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Metabolomic Profiling of #Plasma Reveals Differential #Disease Severity #Markers in avian #influenza A(#H7N9) infection Patients

Highlights

• The characteristics of plasma metabolome in H7N9 patients were first revealed.

• It was discovered that lipid-like molecules were downregulated in death group.

• Metabolites of the tryptophan metabolic pathway were elevated in death group.

• The metabolite-based machine learning achieved an AUC of 0.929 on the test set.


Abstract

Objectives

Avian influenza such as H7N9 is currently a major global public health risk, and at present, there is a lack of relevant diagnostic and treatment markers.

Methods

We collected plasma samples from 104 confirmed H7N9 patients, 31 of whom died. Plasma metabolites were detected by UHPLC-HRMS, and a survival prediction model based on metabolites was constructed by machine learning models.

Results

A total of 1536 metabolites were identified in the plasma samples of H7N9 patients, of which 64 metabolites were up-regulated and 35 metabolites were down-regulated in the death group. The enrichment analysis of Tryptophan metabolism, Porphyrin metabolism and Riboflavin metabolism were significantly up-regulated in the death group. We found that most Lipids and lipid−like molecules were down-regulated in the death group, and Organoheterocyclic compounds were significantly up-regulated in the death group. A machine learning model was constructed for predicting mortality based on Porphobilinogen, 5-Hydroxyindole-3-acetic acid, L-Kynurenine, Biliverdin, and D-Dimer. The AUC on the test set was 0.929.

Conclusions

We first revealed the plasma metabolomic characteristics of H7N9 patients and found that a machine learning model based on plasma metabolites could predict the risk of death for H7N9 in the early stage of admission.

Source: International Journal of Infectious Diseases, https://www.ijidonline.com/article/S1201-9712(25)00181-X/fulltext

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Infectome analysis of #bat #kidneys from #Yunnan province, #China, reveals novel #henipaviruses related to #Hendra and #Nipah viruses and prevalent bacterial and eukaryotic microbes

Abstract

Bats are natural reservoirs for a wide range of microorganisms, including many notable zoonotic pathogens. However, the composition of the infectome (i.e., the collection of viral, bacterial and eukaryotic microorganisms) within bat kidneys remains poorly understood. To address this gap, we performed meta-transcriptomic sequencing on kidney tissues from 142 bats, spanning ten species sampled at five locations in Yunnan province, China. This analysis identified 22 viral species, including 20 novel viruses, two of which represented newly discovered henipaviruses closely related to the highly pathogenic Hendra and Nipah viruses. These henipaviruses were found in the kidneys of bats inhabiting an orchard near villages, raising concerns about potential fruit contamination via bat urine and transmission risks to livestock or humans. Additionally, we identified a novel protozoan parasite, tentatively named Klossiella yunnanensis, along with two highly abundant bacterial species, one of which is a newly discovered species—Flavobacterium yunnanensis. These findings broaden our understanding of the bat kidney infectome, underscore critical zoonotic threats, and highlight the need for comprehensive, full-spectrum microbial analyses of previously understudied organs to better assess spillover risks from bat populations.


Author summary

Although extensive investigations have been conducted on the bat virome, most studies have focused on fecal samples, leaving other tissues, such as the kidney, largely unexplored. However, the kidney can harbor important zoonotic pathogens, including the highly pathogenic Hendra and Nipah viruses, and genomic evidence of henipaviruses in bats from China has remained undocumented. In this study, we report the first detection of two novel henipavirus genomes from bat kidneys in China, one of which is the closest known relative of pathogenic henipaviruses identified to date. Beyond virome analysis, our study also examined highly prevalent bacteria and eukaryotic microbes, identifying those potentially relevant to bat infections. Overall, these findings provide valuable insights into the infectome of the bat kidney, highlighting the need for broader microbial surveillance beyond the gastrointestinal tract.

Source: PLoS Pathogens, https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1013235

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